Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 ST7-202ENST00000323984 2142 ntTSL 5 BASIC31.55■■■□□ 2.64
TPM1P09493 ST7-207ENST00000393449 2127 ntTSL 5 BASIC31.55■■■□□ 2.64
TPM1P09493 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
TPM1P09493 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC31.51■■■□□ 2.63
TPM1P09493 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC31.45■■■□□ 2.62
TPM1P09493 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
TPM1P09493 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
TPM1P09493 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC31.42■■■□□ 2.62
TPM1P09493 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC31.4■■■□□ 2.62
TPM1P09493 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC31.39■■■□□ 2.62
TPM1P09493 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
TPM1P09493 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
TPM1P09493 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
TPM1P09493 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
TPM1P09493 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
TPM1P09493 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
TPM1P09493 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
TPM1P09493 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
TPM1P09493 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
TPM1P09493 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
TPM1P09493 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
TPM1P09493 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
TPM1P09493 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
TPM1P09493 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC31.2■■■□□ 2.59
TPM1P09493 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC31.2■■■□□ 2.59
TPM1P09493 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC31.2■■■□□ 2.59
TPM1P09493 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
TPM1P09493 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC31.19■■■□□ 2.58
TPM1P09493 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC31.17■■■□□ 2.58
TPM1P09493 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
TPM1P09493 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
TPM1P09493 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC31.15■■■□□ 2.58
TPM1P09493 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC31.12■■■□□ 2.57
TPM1P09493 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC31.1■■■□□ 2.57
TPM1P09493 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
TPM1P09493 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
TPM1P09493 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC31.08■■■□□ 2.57
TPM1P09493 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
TPM1P09493 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
TPM1P09493 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
TPM1P09493 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC31.04■■■□□ 2.56
TPM1P09493 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
TPM1P09493 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
TPM1P09493 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC31.03■■■□□ 2.56
TPM1P09493 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
TPM1P09493 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
TPM1P09493 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC31.01■■■□□ 2.56
TPM1P09493 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
TPM1P09493 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
TPM1P09493 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
TPM1P09493 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC30.99■■■□□ 2.55
TPM1P09493 INO80B-203ENST00000409917 796 ntTSL 2 BASIC30.99■■■□□ 2.55
TPM1P09493 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
TPM1P09493 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC30.95■■■□□ 2.55
TPM1P09493 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC30.95■■■□□ 2.55
TPM1P09493 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.54
TPM1P09493 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
TPM1P09493 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC30.9■■■□□ 2.54
TPM1P09493 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
TPM1P09493 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC30.89■■■□□ 2.54
TPM1P09493 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
TPM1P09493 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
TPM1P09493 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC30.85■■■□□ 2.53
TPM1P09493 AC015813.7-201ENST00000623294 581 ntBASIC30.84■■■□□ 2.53
TPM1P09493 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
TPM1P09493 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC30.81■■■□□ 2.52
TPM1P09493 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
TPM1P09493 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC30.79■■■□□ 2.52
TPM1P09493 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
TPM1P09493 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
TPM1P09493 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
TPM1P09493 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
TPM1P09493 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
TPM1P09493 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
TPM1P09493 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
TPM1P09493 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
TPM1P09493 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC30.74■■■□□ 2.51
TPM1P09493 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
TPM1P09493 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC30.72■■■□□ 2.51
TPM1P09493 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
TPM1P09493 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC30.71■■■□□ 2.51
TPM1P09493 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
TPM1P09493 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
TPM1P09493 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC30.67■■■□□ 2.5
TPM1P09493 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC30.64■■■□□ 2.5
TPM1P09493 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
TPM1P09493 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC30.63■■■□□ 2.49
TPM1P09493 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
TPM1P09493 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
TPM1P09493 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC30.63■■■□□ 2.49
TPM1P09493 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
TPM1P09493 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC30.61■■■□□ 2.49
TPM1P09493 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC30.61■■■□□ 2.49
TPM1P09493 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
TPM1P09493 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC30.6■■■□□ 2.49
TPM1P09493 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC30.6■■■□□ 2.49
TPM1P09493 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC30.59■■■□□ 2.49
TPM1P09493 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
TPM1P09493 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC30.58■■■□□ 2.49
TPM1P09493 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC30.57■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms