RNA–Protein interactions for RNA: ENST00000621453.4

FMR1-219, Transcript of fragile X mental retardation 1, humanhuman

TSL 1 (best) BASIC

Gene FMR1, Length 1,864 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FMR1-219ENST00000621453 NISCHQ9Y2I1 1504 aa62.2■■■■■ 7.55
FMR1-219ENST00000621453 CCDC180Q9P1Z9 1646 aa54.06■■■■■ 6.24
FMR1-219ENST00000621453 ZCCHC6Q5VYS8 1495 aaKnown RBP52.33■■■■■ 5.97
FMR1-219ENST00000621453 DCAF1Q9Y4B6 1507 aa51.4■■■■■ 5.82
FMR1-219ENST00000621453 DCAF8L2P0C7V8 631 aa51.31■■■■■ 5.8
FMR1-219ENST00000621453 SHROOM4Q9ULL8 1493 aa51.06■■■■■ 5.76
FMR1-219ENST00000621453 ABCC9O60706 1549 aa50.83■■■■■ 5.73
FMR1-219ENST00000621453 MYO15BQ96JP2 1530 aa50.64■■■■■ 5.7
FMR1-219ENST00000621453 NACADO15069 1562 aa50.25■■■■■ 5.64
FMR1-219ENST00000621453 SCRIBQ14160 1630 aa49.82■■■■■ 5.57
FMR1-219ENST00000621453 RB1CC1Q8TDY2 1594 aa49.75■■■■■ 5.55
FMR1-219ENST00000621453 SUPT5HO00267 1087 aaKnown RBP49.31■■■■■ 5.48
FMR1-219ENST00000621453 UNC13AQ9UPW8 1703 aa48.84■■■■■ 5.41
FMR1-219ENST00000621453 RSF1Q96T23 1441 aaPredicted RBP48.4■■■■■ 5.34
FMR1-219ENST00000621453 CECR2Q9BXF3 1484 aa48.33■■■■■ 5.33
FMR1-219ENST00000621453 BICRAQ9NZM4 1560 aa48.26■■■■■ 5.32
FMR1-219ENST00000621453 MROH2BQ7Z745 1585 aa48.09■■■■■ 5.29
FMR1-219ENST00000621453 PABPN1Q86U42 306 aaKnown RBP eCLIP48.01■■■■■ 5.28
FMR1-219ENST00000621453 BAZ1AQ9NRL2 1556 aaPredicted RBP48■■■■■ 5.27
FMR1-219ENST00000621453 SMARCA4P51532 1647 aa47.76■■■■■ 5.24
FMR1-219ENST00000621453 WIZO95785 1651 aa47.75■■■■■ 5.24
FMR1-219ENST00000621453 CHIC1Q5VXU3 224 aa47.38■■■■■ 5.17
FMR1-219ENST00000621453 TOP2AP11388 1531 aaKnown RBP47.22■■■■■ 5.15
FMR1-219ENST00000621453 PEG3Q9GZU2 1588 aa47.13■■■■■ 5.14
FMR1-219ENST00000621453 ATAD2BQ9ULI0 1458 aa46.86■■■■■ 5.09
FMR1-219ENST00000621453 SMARCA2P51531 1590 aa46.84■■■■■ 5.09
FMR1-219ENST00000621453 EIF4G1Q04637 1599 aaKnown RBP46.78■■■■■ 5.08
FMR1-219ENST00000621453 CCDC88BA6NC98 1476 aa46.75■■■■■ 5.07
FMR1-219ENST00000621453 BAZ1BQ9UIG0 1483 aaKnown RBP46.63■■■■■ 5.06
FMR1-219ENST00000621453 NCAPD3P42695 1498 aa46.38■■■■■ 5.01
FMR1-219ENST00000621453 HMGXB3Q12766 1538 aa46.36■■■■■ 5.01
FMR1-219ENST00000621453 TRIM41Q8WV44 630 aa46.31■■■■■ 5
FMR1-219ENST00000621453 CC2D2AQ9P2K1 1620 aa46.01■■■■■ 4.96
FMR1-219ENST00000621453 ABCC8Q09428 1581 aa45.93■■■■■ 4.94
FMR1-219ENST00000621453 LOC105371045A0A1W2PR82 267 aa45.6■■■■■ 4.89
FMR1-219ENST00000621453 WRNQ14191 1432 aaPredicted RBP eCLIP45.56■■■■■ 4.88
FMR1-219ENST00000621453 FAM9AQ8IZU1 332 aaPredicted RBP45.51■■■■■ 4.88
FMR1-219ENST00000621453 CFTRP13569 1480 aa45.47■■■■■ 4.87
FMR1-219ENST00000621453 SYNJ1O43426 1573 aa45.37■■■■■ 4.85
FMR1-219ENST00000621453 PRDM2Q13029 1718 aa45.31■■■■■ 4.84
FMR1-219ENST00000621453 CADPSQ9ULU8 1353 aa45.23■■■■■ 4.83
FMR1-219ENST00000621453 TOP2BQ02880 1626 aa45.15■■■■■ 4.82
FMR1-219ENST00000621453 SOGA1O94964 1423 aa45.12■■■■■ 4.81
FMR1-219ENST00000621453 BIVM-ERCC5R4GMW8 1640 aa45.1■■■■■ 4.81
FMR1-219ENST00000621453 EEA1Q15075 1411 aa45.08■■■■■ 4.81
FMR1-219ENST00000621453 RUSC2Q8N2Y8 1516 aa44.95■■■■■ 4.79
FMR1-219ENST00000621453 CUX1P39880 1505 aa44.94■■■■■ 4.78
FMR1-219ENST00000621453 EHMT2Q96KQ7 1210 aa44.88■■■■■ 4.78
FMR1-219ENST00000621453 CSRNP3Q8WYN3 585 aa44.81■■■■■ 4.76
FMR1-219ENST00000621453 LAMC3Q9Y6N6 1575 aa44.76■■■■■ 4.76
FMR1-219ENST00000621453 NESP48681 1621 aa44.75■■■■■ 4.75
FMR1-219ENST00000621453 FANCD2Q9BXW9 1451 aa44.75■■■■■ 4.75
FMR1-219ENST00000621453 DNAJC5BQ9UF47 199 aa44.74■■■■■ 4.75
FMR1-219ENST00000621453 KIF21BO75037 1637 aa44.5■■■■■ 4.71
FMR1-219ENST00000621453 GOLGA3Q08378 1498 aa44.5■■■■■ 4.71
FMR1-219ENST00000621453 CEP164Q9UPV0 1460 aa44.47■■■■■ 4.71
FMR1-219ENST00000621453 TNIKQ9UKE5 1360 aa44.42■■■■■ 4.7
FMR1-219ENST00000621453 DNMBPQ6XZF7 1577 aa44.41■■■■■ 4.7
FMR1-219ENST00000621453 PDS5BQ9NTI5 1447 aa44.4■■■■■ 4.7
FMR1-219ENST00000621453 FGD5Q6ZNL6 1462 aa44.39■■■■■ 4.7
FMR1-219ENST00000621453 KIF27Q86VH2 1401 aa44.36■■■■■ 4.69
FMR1-219ENST00000621453 TOPBP1Q92547 1522 aa44.31■■■■■ 4.68
FMR1-219ENST00000621453 UBTFP17480 764 aaKnown RBP44.3■■■■■ 4.68
FMR1-219ENST00000621453 KIF21AQ7Z4S6 1674 aa44.24■■■■■ 4.67
FMR1-219ENST00000621453 CEP162Q5TB80 1403 aa44.23■■■■■ 4.67
FMR1-219ENST00000621453 RAPGEF2Q9Y4G8 1499 aa44.19■■■■■ 4.66
FMR1-219ENST00000621453 CUX2O14529 1486 aa44.18■■■■■ 4.66
FMR1-219ENST00000621453 URB2Q14146 1524 aaKnown RBP44.17■■■■■ 4.66
FMR1-219ENST00000621453 PRXQ9BXM0 1461 aa44.16■■■■■ 4.66
FMR1-219ENST00000621453 POLA1P09884 1462 aaPredicted RBP44.13■■■■■ 4.65
FMR1-219ENST00000621453 ERICH3Q5RHP9 1530 aa44.12■■■■■ 4.65
FMR1-219ENST00000621453 RAD54L2Q9Y4B4 1467 aa44■■■■■ 4.63
FMR1-219ENST00000621453 ABCA10Q8WWZ4 1543 aa43.99■■■■■ 4.63
FMR1-219ENST00000621453 IGF1RP08069 1367 aa43.93■■■■■ 4.62
FMR1-219ENST00000621453 PCGF6Q9BYE7 350 aa43.9■■■■■ 4.62
FMR1-219ENST00000621453 WDR97A6NE52 1622 aa43.85■■■■■ 4.61
FMR1-219ENST00000621453 MRC2Q9UBG0 1479 aa43.8■■■■■ 4.6
FMR1-219ENST00000621453 CLIP1P30622 1438 aa43.79■■■■■ 4.6
FMR1-219ENST00000621453 TRIM26Q12899 539 aaPredicted RBP43.79■■■■■ 4.6
FMR1-219ENST00000621453 CARMIL1Q5VZK9 1371 aa43.72■■■■■ 4.59
FMR1-219ENST00000621453 TARBP1Q13395 1621 aaKnown RBP43.62■■■■■ 4.57
FMR1-219ENST00000621453 ABCA5Q8WWZ7 1642 aa43.62■■■■■ 4.57
FMR1-219ENST00000621453 CUL7Q14999 1698 aa43.58■■■■■ 4.57
FMR1-219ENST00000621453 WDR62O43379 1518 aa43.57■■■■■ 4.56
FMR1-219ENST00000621453 ERCC6Q03468 1493 aa43.53■■■■■ 4.56
FMR1-219ENST00000621453 TDRD9Q8NDG6 1382 aaKnown RBP43.53■■■■■ 4.56
FMR1-219ENST00000621453 GAPVD1Q14C86 1478 aa43.5■■■■■ 4.55
FMR1-219ENST00000621453 RANGAP1P46060 587 aaPredicted RBP43.49■■■■■ 4.55
FMR1-219ENST00000621453 VPS8Q8N3P4 1428 aa43.47■■■■■ 4.55
FMR1-219ENST00000621453 PPARGC1BQ86YN6 1023 aaKnown RBP43.45■■■■■ 4.55
FMR1-219ENST00000621453 THOC2Q8NI27 1593 aaKnown RBP43.37■■■■■ 4.53
FMR1-219ENST00000621453 ARAP1Q96P48 1450 aa43.33■■■■■ 4.53
FMR1-219ENST00000621453 IFT140Q96RY7 1462 aa43.33■■■■■ 4.53
FMR1-219ENST00000621453 PBRM1Q86U86 1689 aa43.27■■■■■ 4.52
FMR1-219ENST00000621453 ARHGAP35Q9NRY4 1499 aa43.26■■■■■ 4.52
FMR1-219ENST00000621453 AQRO60306 1485 aaKnown RBP eCLIP43.2■■■■■ 4.517e-6■■□□□ 12.2
FMR1-219ENST00000621453 CTTNBP2Q8WZ74 1663 aa43.18■■■■■ 4.5
FMR1-219ENST00000621453 ZNF608Q9ULD9 1512 aaPredicted RBP43.11■■■■■ 4.49
FMR1-219ENST00000621453 GRIN2BQ13224 1484 aa43.1■■■■■ 4.49
FMR1-219ENST00000621453 APLP2Q06481 763 aa43.05■■■■■ 4.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms