RNA–Protein interactions for RNA: ENST00000610462.1

CSPG5-205, Transcript of chondroitin sulfate proteoglycan 5, humanhuman

TSL 5 BASIC

Gene CSPG5, Length 2,073 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG5-205ENST00000610462 NISCHQ9Y2I1 1504 aa61.05■■■■■ 7.36
CSPG5-205ENST00000610462 CCDC180Q9P1Z9 1646 aa52.7■■■■■ 6.03
CSPG5-205ENST00000610462 ZCCHC6Q5VYS8 1495 aaKnown RBP51.49■■■■■ 5.83
CSPG5-205ENST00000610462 SHROOM4Q9ULL8 1493 aa50.7■■■■■ 5.71
CSPG5-205ENST00000610462 DCAF1Q9Y4B6 1507 aa50.4■■■■■ 5.66
CSPG5-205ENST00000610462 DCAF8L2P0C7V8 631 aa50.22■■■■■ 5.63
CSPG5-205ENST00000610462 MYO15BQ96JP2 1530 aa49.37■■■■■ 5.49
CSPG5-205ENST00000610462 SUPT5HO00267 1087 aaKnown RBP49.29■■■■■ 5.48
CSPG5-205ENST00000610462 ABCC9O60706 1549 aa49.03■■■■■ 5.44
CSPG5-205ENST00000610462 NACADO15069 1562 aa48.83■■■■■ 5.41
CSPG5-205ENST00000610462 SCRIBQ14160 1630 aa48.74■■■■■ 5.39
CSPG5-205ENST00000610462 RB1CC1Q8TDY2 1594 aa48.19■■■■■ 5.3
CSPG5-205ENST00000610462 RSF1Q96T23 1441 aaPredicted RBP47.79■■■■■ 5.24
CSPG5-205ENST00000610462 CHIC1Q5VXU3 224 aa47.68■■■■■ 5.22
CSPG5-205ENST00000610462 CECR2Q9BXF3 1484 aa47.43■■■■■ 5.18
CSPG5-205ENST00000610462 UNC13AQ9UPW8 1703 aa47.41■■■■■ 5.18
CSPG5-205ENST00000610462 MROH2BQ7Z745 1585 aa47.27■■■■■ 5.16
CSPG5-205ENST00000610462 BAZ1AQ9NRL2 1556 aaPredicted RBP47.04■■■■■ 5.12
CSPG5-205ENST00000610462 WIZO95785 1651 aa46.98■■■■■ 5.11
CSPG5-205ENST00000610462 BICRAQ9NZM4 1560 aa46.79■■■■■ 5.08
CSPG5-205ENST00000610462 SMARCA4P51532 1647 aa46.74■■■■■ 5.07
CSPG5-205ENST00000610462 PABPN1Q86U42 306 aaKnown RBP eCLIP46.48■■■■■ 5.03
CSPG5-205ENST00000610462 TOP2AP11388 1531 aaKnown RBP46.42■■■■■ 5.02
CSPG5-205ENST00000610462 TRIM41Q8WV44 630 aa46.19■■■■■ 4.99
CSPG5-205ENST00000610462 EIF4G1Q04637 1599 aaKnown RBP46.11■■■■■ 4.97
CSPG5-205ENST00000610462 SMARCA2P51531 1590 aa46.06■■■■■ 4.96
CSPG5-205ENST00000610462 PEG3Q9GZU2 1588 aa46.05■■■■■ 4.96
CSPG5-205ENST00000610462 CCDC88BA6NC98 1476 aa46.01■■■■■ 4.96
CSPG5-205ENST00000610462 LOC105371045A0A1W2PR82 267 aa45.98■■■■■ 4.95
CSPG5-205ENST00000610462 ATAD2BQ9ULI0 1458 aa45.69■■■■■ 4.9
CSPG5-205ENST00000610462 BAZ1BQ9UIG0 1483 aaKnown RBP45.49■■■■■ 4.87
CSPG5-205ENST00000610462 FAM9AQ8IZU1 332 aaPredicted RBP45.48■■■■■ 4.87
CSPG5-205ENST00000610462 ABCC8Q09428 1581 aa45.44■■■■■ 4.87
CSPG5-205ENST00000610462 HMGXB3Q12766 1538 aa45.1■■■■■ 4.81
CSPG5-205ENST00000610462 NCAPD3P42695 1498 aa45.07■■■■■ 4.81
CSPG5-205ENST00000610462 PCGF6Q9BYE7 350 aa44.97■■■■■ 4.79
CSPG5-205ENST00000610462 WRNQ14191 1432 aaPredicted RBP eCLIP44.94■■■■■ 4.78
CSPG5-205ENST00000610462 EHMT2Q96KQ7 1210 aa44.87■■■■■ 4.77
CSPG5-205ENST00000610462 EEA1Q15075 1411 aa44.79■■■■■ 4.76
CSPG5-205ENST00000610462 SOGA1O94964 1423 aa44.78■■■■■ 4.76
CSPG5-205ENST00000610462 SYNJ1O43426 1573 aa44.77■■■■■ 4.76
CSPG5-205ENST00000610462 TRIM26Q12899 539 aaPredicted RBP44.63■■■■■ 4.74
CSPG5-205ENST00000610462 RUSC2Q8N2Y8 1516 aa44.59■■■■■ 4.73
CSPG5-205ENST00000610462 CSRNP3Q8WYN3 585 aa44.52■■■■■ 4.72
CSPG5-205ENST00000610462 HRCP23327 699 aa44.49■■■■■ 4.71
CSPG5-205ENST00000610462 TOP2BQ02880 1626 aa44.46■■■■■ 4.71
CSPG5-205ENST00000610462 BIVM-ERCC5R4GMW8 1640 aa44.4■■■■■ 4.7
CSPG5-205ENST00000610462 CFTRP13569 1480 aa44.39■■■■■ 4.7
CSPG5-205ENST00000610462 CC2D2AQ9P2K1 1620 aa44.37■■■■■ 4.69
CSPG5-205ENST00000610462 TNIKQ9UKE5 1360 aa44.34■■■■■ 4.69
CSPG5-205ENST00000610462 PRDM2Q13029 1718 aa44.29■■■■■ 4.68
CSPG5-205ENST00000610462 GOLGA3Q08378 1498 aa44.28■■■■■ 4.68
CSPG5-205ENST00000610462 KIF21BO75037 1637 aa44.21■■■■■ 4.67
CSPG5-205ENST00000610462 CEP162Q5TB80 1403 aa44.21■■■■■ 4.67
CSPG5-205ENST00000610462 CEP164Q9UPV0 1460 aa44.16■■■■■ 4.66
CSPG5-205ENST00000610462 CUX1P39880 1505 aa44.12■■■■■ 4.65
CSPG5-205ENST00000610462 UBTFP17480 764 aaKnown RBP44.09■■■■■ 4.65
CSPG5-205ENST00000610462 CADPSQ9ULU8 1353 aa44.02■■■■■ 4.64
CSPG5-205ENST00000610462 RAPGEF2Q9Y4G8 1499 aa43.81■■■■■ 4.6
CSPG5-205ENST00000610462 PPARGC1BQ86YN6 1023 aaKnown RBP43.77■■■■■ 4.6
CSPG5-205ENST00000610462 ERICH3Q5RHP9 1530 aa43.7■■■■■ 4.59
CSPG5-205ENST00000610462 KIF27Q86VH2 1401 aa43.69■■■■■ 4.58
CSPG5-205ENST00000610462 PRXQ9BXM0 1461 aa43.67■■■■■ 4.58
CSPG5-205ENST00000610462 CLIP1P30622 1438 aa43.62■■■■■ 4.57
CSPG5-205ENST00000610462 FANCD2Q9BXW9 1451 aa43.57■■■■■ 4.57
CSPG5-205ENST00000610462 FGD5Q6ZNL6 1462 aa43.46■■■■■ 4.55
CSPG5-205ENST00000610462 NESP48681 1621 aa43.4■■■■■ 4.54
CSPG5-205ENST00000610462 CUX2O14529 1486 aa43.38■■■■■ 4.54
CSPG5-205ENST00000610462 LAMC3Q9Y6N6 1575 aa43.38■■■■■ 4.53
CSPG5-205ENST00000610462 VPS8Q8N3P4 1428 aa43.38■■■■■ 4.53
CSPG5-205ENST00000610462 DNMBPQ6XZF7 1577 aa43.36■■■■■ 4.53
CSPG5-205ENST00000610462 ZEB1P37275 1124 aaPredicted RBP43.35■■■■■ 4.53
CSPG5-205ENST00000610462 IGF1RP08069 1367 aa43.22■■■■■ 4.51
CSPG5-205ENST00000610462 TOPBP1Q92547 1522 aa43.22■■■■■ 4.51
CSPG5-205ENST00000610462 TTBK1Q5TCY1 1321 aaPredicted RBP43.22■■■■■ 4.51
CSPG5-205ENST00000610462 RANGAP1P46060 587 aaPredicted RBP43.14■■■■■ 4.5
CSPG5-205ENST00000610462 POLA1P09884 1462 aaPredicted RBP43.09■■■■■ 4.49
CSPG5-205ENST00000610462 ARAP1Q96P48 1450 aa43.09■■■■■ 4.49
CSPG5-205ENST00000610462 ABCA10Q8WWZ4 1543 aa43.06■■■■■ 4.48
CSPG5-205ENST00000610462 DNAJC5BQ9UF47 199 aa43.02■■■■■ 4.48
CSPG5-205ENST00000610462 CARMIL1Q5VZK9 1371 aa43.02■■■■■ 4.48
CSPG5-205ENST00000610462 RAD54L2Q9Y4B4 1467 aa43.01■■■■■ 4.48
CSPG5-205ENST00000610462 PDS5BQ9NTI5 1447 aa43.01■■■■■ 4.48
CSPG5-205ENST00000610462 URB2Q14146 1524 aaKnown RBP42.99■■■■■ 4.47
CSPG5-205ENST00000610462 APLP2Q06481 763 aa42.99■■■■■ 4.47
CSPG5-205ENST00000610462 KIF21AQ7Z4S6 1674 aa42.89■■■■■ 4.46
CSPG5-205ENST00000610462 ARHGAP35Q9NRY4 1499 aa42.88■■■■■ 4.45
CSPG5-205ENST00000610462 WDR97A6NE52 1622 aa42.87■■■■■ 4.45
CSPG5-205ENST00000610462 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP42.79■■■■■ 4.44
CSPG5-205ENST00000610462 CUL7Q14999 1698 aa42.78■■■■■ 4.44
CSPG5-205ENST00000610462 CCER1Q8TC90 406 aaPredicted RBP42.72■■■■■ 4.43
CSPG5-205ENST00000610462 ABCA5Q8WWZ7 1642 aa42.65■■■■■ 4.42
CSPG5-205ENST00000610462 CTTNBP2Q8WZ74 1663 aa42.52■■■■■ 4.4
CSPG5-205ENST00000610462 GAPVD1Q14C86 1478 aa42.5■■■■■ 4.39
CSPG5-205ENST00000610462 TARBP1Q13395 1621 aaKnown RBP42.5■■■■■ 4.39
CSPG5-205ENST00000610462 TDRD9Q8NDG6 1382 aaKnown RBP42.49■■■■■ 4.39
CSPG5-205ENST00000610462 KANK4Q5T7N3 995 aaPredicted RBP42.48■■■■■ 4.39
CSPG5-205ENST00000610462 MRC2Q9UBG0 1479 aa42.41■■■■■ 4.38
CSPG5-205ENST00000610462 HNRNPUL2Q1KMD3 747 aaKnown RBP42.4■■■■■ 4.38
CSPG5-205ENST00000610462 MAP3K1Q13233 1512 aa42.4■■■■■ 4.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms