RNA–Protein interactions for RNA: ENST00000528900.5

RDX-206, Transcript of radixin, humanhuman

TSL 1 (best) BASIC

Gene RDX, Length 1,814 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RDX-206ENST00000528900 NISCHQ9Y2I1 1504 aa62.52■■■■■ 7.6
RDX-206ENST00000528900 CCDC180Q9P1Z9 1646 aa54.48■■■■■ 6.31
RDX-206ENST00000528900 ZCCHC6Q5VYS8 1495 aaKnown RBP52.57■■■■■ 6.01
RDX-206ENST00000528900 DCAF1Q9Y4B6 1507 aa51.79■■■■■ 5.88
RDX-206ENST00000528900 DCAF8L2P0C7V8 631 aa51.45■■■■■ 5.83
RDX-206ENST00000528900 ABCC9O60706 1549 aa51.18■■■■■ 5.78
RDX-206ENST00000528900 MYO15BQ96JP2 1530 aa51.11■■■■■ 5.77
RDX-206ENST00000528900 SHROOM4Q9ULL8 1493 aa51■■■■■ 5.75
RDX-206ENST00000528900 NACADO15069 1562 aa50.69■■■■■ 5.7
RDX-206ENST00000528900 RB1CC1Q8TDY2 1594 aa50.18■■■■■ 5.62
RDX-206ENST00000528900 SCRIBQ14160 1630 aa50.01■■■■■ 5.6
RDX-206ENST00000528900 SUPT5HO00267 1087 aaKnown RBP49.22■■■■■ 5.47
RDX-206ENST00000528900 UNC13AQ9UPW8 1703 aa49.12■■■■■ 5.45
RDX-206ENST00000528900 BICRAQ9NZM4 1560 aa48.61■■■■■ 5.37
RDX-206ENST00000528900 RSF1Q96T23 1441 aaPredicted RBP48.56■■■■■ 5.36
RDX-206ENST00000528900 CECR2Q9BXF3 1484 aa48.49■■■■■ 5.35
RDX-206ENST00000528900 BAZ1AQ9NRL2 1556 aaPredicted RBP48.29■■■■■ 5.32
RDX-206ENST00000528900 PABPN1Q86U42 306 aaKnown RBP eCLIP48.28■■■■■ 5.32
RDX-206ENST00000528900 MROH2BQ7Z745 1585 aa48.26■■■■■ 5.32
RDX-206ENST00000528900 SMARCA4P51532 1647 aa48.01■■■■■ 5.28
RDX-206ENST00000528900 WIZO95785 1651 aa47.88■■■■■ 5.25
RDX-206ENST00000528900 PEG3Q9GZU2 1588 aa47.47■■■■■ 5.19
RDX-206ENST00000528900 TOP2AP11388 1531 aaKnown RBP47.45■■■■■ 5.19
RDX-206ENST00000528900 CHIC1Q5VXU3 224 aa47.29■■■■■ 5.16
RDX-206ENST00000528900 SMARCA2P51531 1590 aa47.2■■■■■ 5.15
RDX-206ENST00000528900 ATAD2BQ9ULI0 1458 aa47.16■■■■■ 5.14
RDX-206ENST00000528900 EIF4G1Q04637 1599 aaKnown RBP47.13■■■■■ 5.14
RDX-206ENST00000528900 CCDC88BA6NC98 1476 aa46.94■■■■■ 5.1
RDX-206ENST00000528900 BAZ1BQ9UIG0 1483 aaKnown RBP46.92■■■■■ 5.1
RDX-206ENST00000528900 NCAPD3P42695 1498 aa46.76■■■■■ 5.08
RDX-206ENST00000528900 HMGXB3Q12766 1538 aa46.72■■■■■ 5.07
RDX-206ENST00000528900 CC2D2AQ9P2K1 1620 aa46.37■■■■■ 5.01
RDX-206ENST00000528900 TRIM41Q8WV44 630 aa46.34■■■■■ 5.01
RDX-206ENST00000528900 ABCC8Q09428 1581 aa45.96■■■■■ 4.95
RDX-206ENST00000528900 CFTRP13569 1480 aa45.76■■■■■ 4.92
RDX-206ENST00000528900 WRNQ14191 1432 aaPredicted RBP eCLIP45.72■■■■■ 4.91
RDX-206ENST00000528900 PRDM2Q13029 1718 aa45.59■■■■■ 4.89
RDX-206ENST00000528900 CADPSQ9ULU8 1353 aa45.55■■■■■ 4.88
RDX-206ENST00000528900 SYNJ1O43426 1573 aa45.48■■■■■ 4.87
RDX-206ENST00000528900 LOC105371045A0A1W2PR82 267 aa45.42■■■■■ 4.86
RDX-206ENST00000528900 FAM9AQ8IZU1 332 aaPredicted RBP45.39■■■■■ 4.86
RDX-206ENST00000528900 TOP2BQ02880 1626 aa45.34■■■■■ 4.85
RDX-206ENST00000528900 BIVM-ERCC5R4GMW8 1640 aa45.31■■■■■ 4.84
RDX-206ENST00000528900 EEA1Q15075 1411 aa45.27■■■■■ 4.84
RDX-206ENST00000528900 SOGA1O94964 1423 aa45.16■■■■■ 4.82
RDX-206ENST00000528900 LAMC3Q9Y6N6 1575 aa45.14■■■■■ 4.82
RDX-206ENST00000528900 CUX1P39880 1505 aa45.13■■■■■ 4.81
RDX-206ENST00000528900 FANCD2Q9BXW9 1451 aa45.03■■■■■ 4.8
RDX-206ENST00000528900 NESP48681 1621 aa44.99■■■■■ 4.79
RDX-206ENST00000528900 DNAJC5BQ9UF47 199 aa44.98■■■■■ 4.79
RDX-206ENST00000528900 RUSC2Q8N2Y8 1516 aa44.95■■■■■ 4.79
RDX-206ENST00000528900 CSRNP3Q8WYN3 585 aa44.91■■■■■ 4.78
RDX-206ENST00000528900 PDS5BQ9NTI5 1447 aa44.79■■■■■ 4.76
RDX-206ENST00000528900 CEP164Q9UPV0 1460 aa44.75■■■■■ 4.75
RDX-206ENST00000528900 DNMBPQ6XZF7 1577 aa44.71■■■■■ 4.75
RDX-206ENST00000528900 EHMT2Q96KQ7 1210 aa44.66■■■■■ 4.74
RDX-206ENST00000528900 KIF21BO75037 1637 aa44.62■■■■■ 4.73
RDX-206ENST00000528900 FGD5Q6ZNL6 1462 aa44.6■■■■■ 4.73
RDX-206ENST00000528900 GOLGA3Q08378 1498 aa44.59■■■■■ 4.73
RDX-206ENST00000528900 TOPBP1Q92547 1522 aa44.58■■■■■ 4.73
RDX-206ENST00000528900 KIF27Q86VH2 1401 aa44.58■■■■■ 4.73
RDX-206ENST00000528900 TNIKQ9UKE5 1360 aa44.51■■■■■ 4.72
RDX-206ENST00000528900 KIF21AQ7Z4S6 1674 aa44.5■■■■■ 4.71
RDX-206ENST00000528900 URB2Q14146 1524 aaKnown RBP44.44■■■■■ 4.7
RDX-206ENST00000528900 POLA1P09884 1462 aaPredicted RBP44.36■■■■■ 4.69
RDX-206ENST00000528900 CUX2O14529 1486 aa44.36■■■■■ 4.69
RDX-206ENST00000528900 UBTFP17480 764 aaKnown RBP44.33■■■■■ 4.69
RDX-206ENST00000528900 PRXQ9BXM0 1461 aa44.31■■■■■ 4.68
RDX-206ENST00000528900 ERICH3Q5RHP9 1530 aa44.3■■■■■ 4.68
RDX-206ENST00000528900 ABCA10Q8WWZ4 1543 aa44.26■■■■■ 4.68
RDX-206ENST00000528900 RAPGEF2Q9Y4G8 1499 aa44.25■■■■■ 4.67
RDX-206ENST00000528900 CEP162Q5TB80 1403 aa44.23■■■■■ 4.67
RDX-206ENST00000528900 MRC2Q9UBG0 1479 aa44.18■■■■■ 4.66
RDX-206ENST00000528900 RAD54L2Q9Y4B4 1467 aa44.18■■■■■ 4.66
RDX-206ENST00000528900 IGF1RP08069 1367 aa44.12■■■■■ 4.65
RDX-206ENST00000528900 WDR97A6NE52 1622 aa44.08■■■■■ 4.65
RDX-206ENST00000528900 WDR62O43379 1518 aa43.94■■■■■ 4.62
RDX-206ENST00000528900 ERCC6Q03468 1493 aa43.91■■■■■ 4.62
RDX-206ENST00000528900 CARMIL1Q5VZK9 1371 aa43.91■■■■■ 4.62
RDX-206ENST00000528900 TARBP1Q13395 1621 aaKnown RBP43.9■■■■■ 4.62
RDX-206ENST00000528900 ABCA5Q8WWZ7 1642 aa43.87■■■■■ 4.61
RDX-206ENST00000528900 CLIP1P30622 1438 aa43.86■■■■■ 4.61
RDX-206ENST00000528900 CUL7Q14999 1698 aa43.83■■■■■ 4.61
RDX-206ENST00000528900 GAPVD1Q14C86 1478 aa43.76■■■■■ 4.6
RDX-206ENST00000528900 TDRD9Q8NDG6 1382 aaKnown RBP43.73■■■■■ 4.59
RDX-206ENST00000528900 THOC2Q8NI27 1593 aaKnown RBP43.73■■■■■ 4.59
RDX-206ENST00000528900 IFT140Q96RY7 1462 aa43.69■■■■■ 4.58
RDX-206ENST00000528900 TRIM26Q12899 539 aaPredicted RBP43.64■■■■■ 4.58
RDX-206ENST00000528900 PCGF6Q9BYE7 350 aa43.58■■■■■ 4.57
RDX-206ENST00000528900 VPS8Q8N3P4 1428 aa43.52■■■■■ 4.56
RDX-206ENST00000528900 PBRM1Q86U86 1689 aa43.5■■■■■ 4.55
RDX-206ENST00000528900 AQRO60306 1485 aaKnown RBP eCLIP43.42■■■■■ 4.54
RDX-206ENST00000528900 RANGAP1P46060 587 aaPredicted RBP43.42■■■■■ 4.54
RDX-206ENST00000528900 GRIN2BQ13224 1484 aa43.41■■■■■ 4.54
RDX-206ENST00000528900 ARAP1Q96P48 1450 aa43.38■■■■■ 4.53
RDX-206ENST00000528900 ARHGAP35Q9NRY4 1499 aa43.34■■■■■ 4.53
RDX-206ENST00000528900 CTTNBP2Q8WZ74 1663 aa43.34■■■■■ 4.53
RDX-206ENST00000528900 ZNF608Q9ULD9 1512 aaPredicted RBP43.34■■■■■ 4.53
RDX-206ENST00000528900 FHAD1B1AJZ9 1412 aa43.32■■■■■ 4.53
RDX-206ENST00000528900 ADAMTS12P58397 1594 aa43.28■■■■■ 4.52
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms