RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 NISCHQ9Y2I1 1504 aa54.99■■■■■ 6.39
CBX4-201ENST00000269397 SHROOM4Q9ULL8 1493 aa47.95■■■■■ 5.27
CBX4-201ENST00000269397 SUPT5HO00267 1087 aaKnown RBP47.31■■■■■ 5.16
CBX4-201ENST00000269397 ZCCHC6Q5VYS8 1495 aaKnown RBP46.59■■■■■ 5.05
CBX4-201ENST00000269397 CCDC180Q9P1Z9 1646 aa46.17■■■■■ 4.98
CBX4-201ENST00000269397 MYO15BQ96JP2 1530 aa46.15■■■■■ 4.98
CBX4-201ENST00000269397 CHIC1Q5VXU3 224 aa46.09■■■■■ 4.97
CBX4-201ENST00000269397 DCAF8L2P0C7V8 631 aa46.05■■■■■ 4.96
CBX4-201ENST00000269397 HRCP23327 699 aa45.79■■■■■ 4.92
CBX4-201ENST00000269397 PCGF6Q9BYE7 350 aa45.54■■■■■ 4.88
CBX4-201ENST00000269397 PPARGC1BQ86YN6 1023 aaKnown RBP45.06■■■■■ 4.8
CBX4-201ENST00000269397 LOC105371045A0A1W2PR82 267 aa45■■■■■ 4.79
CBX4-201ENST00000269397 DCAF1Q9Y4B6 1507 aa44.82■■■■■ 4.77
CBX4-201ENST00000269397 TRIM26Q12899 539 aaPredicted RBP44.27■■■■■ 4.68
CBX4-201ENST00000269397 ABCC9O60706 1549 aa44.09■■■■■ 4.65
CBX4-201ENST00000269397 RSF1Q96T23 1441 aaPredicted RBP43.89■■■■■ 4.62
CBX4-201ENST00000269397 SCRIBQ14160 1630 aa43.84■■■■■ 4.61
CBX4-201ENST00000269397 TRIM41Q8WV44 630 aa43.83■■■■■ 4.61
CBX4-201ENST00000269397 FAM9AQ8IZU1 332 aaPredicted RBP43.79■■■■■ 4.6
CBX4-201ENST00000269397 EHMT2Q96KQ7 1210 aa43.63■■■■■ 4.58
CBX4-201ENST00000269397 RB1CC1Q8TDY2 1594 aa43.59■■■■■ 4.57
CBX4-201ENST00000269397 ZEB1P37275 1124 aaPredicted RBP43.43■■■■■ 4.54
CBX4-201ENST00000269397 CECR2Q9BXF3 1484 aa43.09■■■■■ 4.49
CBX4-201ENST00000269397 MROH2BQ7Z745 1585 aa42.93■■■■■ 4.46
CBX4-201ENST00000269397 WIZO95785 1651 aa42.76■■■■■ 4.44
CBX4-201ENST00000269397 SCAF1Q9H7N4 1312 aaKnown RBP42.74■■■■■ 4.43
CBX4-201ENST00000269397 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP42.63■■■■■ 4.41
CBX4-201ENST00000269397 NACADO15069 1562 aa42.62■■■■■ 4.41
CBX4-201ENST00000269397 CCER1Q8TC90 406 aaPredicted RBP42.46■■■■■ 4.39
CBX4-201ENST00000269397 TTBK1Q5TCY1 1321 aaPredicted RBP42.35■■■■■ 4.37
CBX4-201ENST00000269397 BAZ1AQ9NRL2 1556 aaPredicted RBP42.33■■■■■ 4.37
CBX4-201ENST00000269397 PELP1Q8IZL8 1130 aaKnown RBP42.26■■■■■ 4.36
CBX4-201ENST00000269397 EIF4G1Q04637 1599 aaKnown RBP42.24■■■■■ 4.35
CBX4-201ENST00000269397 ABCC8Q09428 1581 aa42.15■■■■■ 4.34
CBX4-201ENST00000269397 CCDC88BA6NC98 1476 aa42.08■■■■■ 4.33
CBX4-201ENST00000269397 NEUROD1Q13562 356 aa42.01■■■■■ 4.32
CBX4-201ENST00000269397 ACIN1Q9UKV3 1341 aaKnown RBP42■■■■■ 4.31
CBX4-201ENST00000269397 DIEXFQ68CQ4 756 aaKnown RBP41.95■■■■■ 4.31
CBX4-201ENST00000269397 CEP162Q5TB80 1403 aa41.92■■■■■ 4.3
CBX4-201ENST00000269397 SOGA1O94964 1423 aa41.9■■■■■ 4.3
CBX4-201ENST00000269397 TOP2AP11388 1531 aaKnown RBP41.89■■■■■ 4.3
CBX4-201ENST00000269397 WRNQ14191 1432 aaPredicted RBP eCLIP41.85■■■■■ 4.29
CBX4-201ENST00000269397 SMARCA2P51531 1590 aa41.76■■■■■ 4.28
CBX4-201ENST00000269397 SMARCA4P51532 1647 aa41.74■■■■■ 4.27
CBX4-201ENST00000269397 UBTFP17480 764 aaKnown RBP41.73■■■■■ 4.27
CBX4-201ENST00000269397 RUSC2Q8N2Y8 1516 aa41.69■■■■■ 4.27
CBX4-201ENST00000269397 TNIKQ9UKE5 1360 aa41.69■■■■■ 4.26
CBX4-201ENST00000269397 GTF3C3Q9Y5Q9 886 aa41.66■■■■■ 4.26
CBX4-201ENST00000269397 CSRNP3Q8WYN3 585 aa41.65■■■■■ 4.26
CBX4-201ENST00000269397 CENPBP07199 599 aaPredicted RBP41.59■■■■■ 4.25
CBX4-201ENST00000269397 EEA1Q15075 1411 aa41.41■■■■■ 4.22
CBX4-201ENST00000269397 ZNF316A6NFI3 1004 aaPredicted RBP41.39■■■■■ 4.22
CBX4-201ENST00000269397 UNC13AQ9UPW8 1703 aa41.37■■■■■ 4.21
CBX4-201ENST00000269397 GOLGA3Q08378 1498 aa41.33■■■■■ 4.21
CBX4-201ENST00000269397 HNRNPUL2Q1KMD3 747 aaKnown RBP41.3■■■■■ 4.2
CBX4-201ENST00000269397 YTHDC1Q96MU7 727 aaKnown RBP41.25■■■■■ 4.19
CBX4-201ENST00000269397 PABPN1Q86U42 306 aaKnown RBP eCLIP41.23■■■■■ 4.19
CBX4-201ENST00000269397 RANGAP1P46060 587 aaPredicted RBP41.03■■■■■ 4.16
CBX4-201ENST00000269397 MIER1Q8N108 512 aa41.03■■■■■ 4.16
CBX4-201ENST00000269397 CEP164Q9UPV0 1460 aa41■■■■■ 4.15
CBX4-201ENST00000269397 CLIP1P30622 1438 aa41■■■■■ 4.15
CBX4-201ENST00000269397 SYNJ1O43426 1573 aa40.99■■■■■ 4.15
CBX4-201ENST00000269397 KIF21BO75037 1637 aa40.86■■■■■ 4.13
CBX4-201ENST00000269397 APLP2Q06481 763 aa40.85■■■■■ 4.13
CBX4-201ENST00000269397 VPS8Q8N3P4 1428 aa40.83■■■■■ 4.13
CBX4-201ENST00000269397 BICRAQ9NZM4 1560 aa40.82■■■■■ 4.12
CBX4-201ENST00000269397 RAPGEF2Q9Y4G8 1499 aa40.78■■■■■ 4.12
CBX4-201ENST00000269397 PEG3Q9GZU2 1588 aa40.71■■■■■ 4.11
CBX4-201ENST00000269397 BAZ1BQ9UIG0 1483 aaKnown RBP40.6■■■■■ 4.09
CBX4-201ENST00000269397 ATAD2BQ9ULI0 1458 aa40.56■■■■■ 4.08
CBX4-201ENST00000269397 KANK4Q5T7N3 995 aaPredicted RBP40.33■■■■■ 4.05
CBX4-201ENST00000269397 DHX57Q6P158 1386 aaKnown RBP40.32■■■■■ 4.05
CBX4-201ENST00000269397 TOP2BQ02880 1626 aa40.29■■■■■ 4.04
CBX4-201ENST00000269397 ARAP1Q96P48 1450 aa40.22■■■■■ 4.03
CBX4-201ENST00000269397 MYT1Q01538 1121 aa40.17■■■■■ 4.02
CBX4-201ENST00000269397 CLSPNQ9HAW4 1339 aa40.15■■■■■ 4.02
CBX4-201ENST00000269397 PRXQ9BXM0 1461 aa40.13■■■■■ 4.01
CBX4-201ENST00000269397 ERICH3Q5RHP9 1530 aa40.07■■■■■ 4
CBX4-201ENST00000269397 BIVM-ERCC5R4GMW8 1640 aa40.06■■■■■ 4
CBX4-201ENST00000269397 ITGAEP38570 1179 aa40.04■■■■■ 4
CBX4-201ENST00000269397 RRBP1Q9P2E9 1410 aaKnown RBP39.92■■■■□ 3.98
CBX4-201ENST00000269397 SUPT16HQ9Y5B9 1047 aaKnown RBP39.9■■■■□ 3.98
CBX4-201ENST00000269397 CUX1P39880 1505 aa39.88■■■■□ 3.97
CBX4-201ENST00000269397 CCNB3Q8WWL7 1395 aa39.84■■■■□ 3.97
CBX4-201ENST00000269397 KIF27Q86VH2 1401 aa39.83■■■■□ 3.97
CBX4-201ENST00000269397 ARHGAP35Q9NRY4 1499 aa39.77■■■■□ 3.96
CBX4-201ENST00000269397 KCNH8Q96L42 1107 aa39.71■■■■□ 3.95
CBX4-201ENST00000269397 CUX2O14529 1486 aa39.7■■■■□ 3.95
CBX4-201ENST00000269397 RAB3GAP2Q9H2M9 1393 aa39.64■■■■□ 3.94
CBX4-201ENST00000269397 NCAPD3P42695 1498 aa39.54■■■■□ 3.92
CBX4-201ENST00000269397 MAPKBP1O60336 1514 aa39.51■■■■□ 3.91
CBX4-201ENST00000269397 HMGXB3Q12766 1538 aa39.5■■■■□ 3.91
CBX4-201ENST00000269397 CFTRP13569 1480 aa39.47■■■■□ 3.91
CBX4-201ENST00000269397 SIN3AQ96ST3 1273 aa39.44■■■■□ 3.9
CBX4-201ENST00000269397 TSHZ2Q9NRE2 1034 aa39.42■■■■□ 3.9
CBX4-201ENST00000269397 IGF1RP08069 1367 aa39.41■■■■□ 3.9
CBX4-201ENST00000269397 FAM50AQ14320 339 aaKnown RBP39.4■■■■□ 3.9
CBX4-201ENST00000269397 DDX10Q13206 875 aaKnown RBP39.39■■■■□ 3.9
CBX4-201ENST00000269397 TIAM1Q13009 1591 aa39.38■■■■□ 3.89
CBX4-201ENST00000269397 SETD5Q9C0A6 1442 aa39.36■■■■□ 3.89
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms