Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC37.31■■■■□ 3.56
TPM1P09493 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC36.53■■■■□ 3.44
TPM1P09493 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC36.3■■■■□ 3.4
TPM1P09493 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC36.23■■■■□ 3.39
TPM1P09493 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC35.96■■■■□ 3.35
TPM1P09493 HES6-203ENST00000409160 1600 ntTSL 2 BASIC35.88■■■■□ 3.33
TPM1P09493 AL356512.1-201ENST00000607453 1739 ntBASIC35.71■■■■□ 3.31
TPM1P09493 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC35.46■■■■□ 3.27
TPM1P09493 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC35.41■■■■□ 3.26
TPM1P09493 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC35.11■■■■□ 3.21
TPM1P09493 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC35.11■■■■□ 3.21
TPM1P09493 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC35.07■■■■□ 3.21
TPM1P09493 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
TPM1P09493 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
TPM1P09493 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC34.77■■■■□ 3.16
TPM1P09493 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC34.65■■■■□ 3.14
TPM1P09493 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC34.62■■■■□ 3.13
TPM1P09493 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
TPM1P09493 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC34.43■■■■□ 3.1
TPM1P09493 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC34.35■■■■□ 3.09
TPM1P09493 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC34.32■■■■□ 3.08
TPM1P09493 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC34.21■■■■□ 3.07
TPM1P09493 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC34.16■■■■□ 3.06
TPM1P09493 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC34.13■■■■□ 3.05
TPM1P09493 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC34.06■■■■□ 3.04
TPM1P09493 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC33.9■■■■□ 3.02
TPM1P09493 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC33.8■■■■□ 3
TPM1P09493 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC33.79■■■■□ 3
TPM1P09493 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC33.66■■■□□ 2.98
TPM1P09493 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
TPM1P09493 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC33.48■■■□□ 2.95
TPM1P09493 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC33.32■■■□□ 2.92
TPM1P09493 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC33.27■■■□□ 2.92
TPM1P09493 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC33.21■■■□□ 2.91
TPM1P09493 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC33.2■■■□□ 2.91
TPM1P09493 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC33.2■■■□□ 2.9
TPM1P09493 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
TPM1P09493 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC33.12■■■□□ 2.89
TPM1P09493 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
TPM1P09493 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC33.01■■■□□ 2.88
TPM1P09493 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
TPM1P09493 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC32.97■■■□□ 2.87
TPM1P09493 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
TPM1P09493 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
TPM1P09493 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC32.86■■■□□ 2.85
TPM1P09493 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC32.85■■■□□ 2.85
TPM1P09493 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
TPM1P09493 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
TPM1P09493 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
TPM1P09493 ILK-212ENST00000532063 1617 ntTSL 2 BASIC32.64■■■□□ 2.82
TPM1P09493 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC32.6■■■□□ 2.81
TPM1P09493 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC32.6■■■□□ 2.81
TPM1P09493 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC32.58■■■□□ 2.81
TPM1P09493 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
TPM1P09493 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC32.5■■■□□ 2.79
TPM1P09493 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC32.47■■■□□ 2.79
TPM1P09493 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
TPM1P09493 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC32.46■■■□□ 2.79
TPM1P09493 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC32.43■■■□□ 2.78
TPM1P09493 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC32.4■■■□□ 2.78
TPM1P09493 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC32.38■■■□□ 2.77
TPM1P09493 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC32.35■■■□□ 2.77
TPM1P09493 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
TPM1P09493 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
TPM1P09493 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
TPM1P09493 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC32.23■■■□□ 2.75
TPM1P09493 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC32.19■■■□□ 2.74
TPM1P09493 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC32.12■■■□□ 2.73
TPM1P09493 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
TPM1P09493 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
TPM1P09493 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
TPM1P09493 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
TPM1P09493 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC32.02■■■□□ 2.72
TPM1P09493 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC32.02■■■□□ 2.72
TPM1P09493 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
TPM1P09493 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC31.96■■■□□ 2.71
TPM1P09493 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC31.95■■■□□ 2.71
TPM1P09493 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
TPM1P09493 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC31.9■■■□□ 2.7
TPM1P09493 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
TPM1P09493 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC31.86■■■□□ 2.69
TPM1P09493 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
TPM1P09493 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC31.74■■■□□ 2.67
TPM1P09493 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC31.74■■■□□ 2.67
TPM1P09493 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC31.72■■■□□ 2.67
TPM1P09493 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
TPM1P09493 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
TPM1P09493 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
TPM1P09493 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC31.69■■■□□ 2.66
TPM1P09493 AC145285.7-201ENST00000614819 1539 ntBASIC31.69■■■□□ 2.66
TPM1P09493 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
TPM1P09493 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
TPM1P09493 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC31.62■■■□□ 2.65
TPM1P09493 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC31.61■■■□□ 2.65
TPM1P09493 ST7-205ENST00000393446 2114 ntTSL 5 BASIC31.61■■■□□ 2.65
TPM1P09493 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC31.6■■■□□ 2.65
TPM1P09493 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
TPM1P09493 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC31.58■■■□□ 2.65
TPM1P09493 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
TPM1P09493 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC31.57■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms