Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
NUCKS1Q9H1E3 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
NUCKS1Q9H1E3 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
NUCKS1Q9H1E3 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC29.4■■■□□ 2.3
NUCKS1Q9H1E3 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC29.39■■■□□ 2.3
NUCKS1Q9H1E3 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
NUCKS1Q9H1E3 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC29.36■■■□□ 2.29
NUCKS1Q9H1E3 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC29.36■■■□□ 2.29
NUCKS1Q9H1E3 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC29.36■■■□□ 2.29
NUCKS1Q9H1E3 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
NUCKS1Q9H1E3 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC29.34■■■□□ 2.29
NUCKS1Q9H1E3 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
NUCKS1Q9H1E3 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC29.33■■■□□ 2.29
NUCKS1Q9H1E3 ABCB10P1-201ENST00000614297 2181 ntBASIC29.32■■■□□ 2.28
NUCKS1Q9H1E3 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
NUCKS1Q9H1E3 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC29.29■■■□□ 2.28
NUCKS1Q9H1E3 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC29.27■■■□□ 2.28
NUCKS1Q9H1E3 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
NUCKS1Q9H1E3 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC29.26■■■□□ 2.28
NUCKS1Q9H1E3 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC29.26■■■□□ 2.27
NUCKS1Q9H1E3 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC29.25■■■□□ 2.27
NUCKS1Q9H1E3 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
NUCKS1Q9H1E3 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
NUCKS1Q9H1E3 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC29.24■■■□□ 2.27
NUCKS1Q9H1E3 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
NUCKS1Q9H1E3 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
NUCKS1Q9H1E3 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC29.22■■■□□ 2.27
NUCKS1Q9H1E3 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
NUCKS1Q9H1E3 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC29.21■■■□□ 2.27
NUCKS1Q9H1E3 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
NUCKS1Q9H1E3 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
NUCKS1Q9H1E3 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC29.2■■■□□ 2.27
NUCKS1Q9H1E3 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
NUCKS1Q9H1E3 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC29.2■■■□□ 2.26
NUCKS1Q9H1E3 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC29.19■■■□□ 2.26
NUCKS1Q9H1E3 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
NUCKS1Q9H1E3 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC29.18■■■□□ 2.26
NUCKS1Q9H1E3 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC29.17■■■□□ 2.26
NUCKS1Q9H1E3 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
NUCKS1Q9H1E3 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC29.15■■■□□ 2.26
NUCKS1Q9H1E3 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
NUCKS1Q9H1E3 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
NUCKS1Q9H1E3 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC29.15■■■□□ 2.26
NUCKS1Q9H1E3 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
NUCKS1Q9H1E3 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC29.13■■■□□ 2.25
NUCKS1Q9H1E3 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC29.13■■■□□ 2.25
NUCKS1Q9H1E3 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC29.12■■■□□ 2.25
NUCKS1Q9H1E3 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
NUCKS1Q9H1E3 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC29.11■■■□□ 2.25
NUCKS1Q9H1E3 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
NUCKS1Q9H1E3 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
NUCKS1Q9H1E3 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC29.1■■■□□ 2.25
NUCKS1Q9H1E3 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC29.09■■■□□ 2.25
NUCKS1Q9H1E3 ABCB10P3-201ENST00000561950 2166 ntBASIC29.09■■■□□ 2.25
NUCKS1Q9H1E3 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC29.09■■■□□ 2.25
NUCKS1Q9H1E3 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC29.09■■■□□ 2.25
NUCKS1Q9H1E3 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
NUCKS1Q9H1E3 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC29.07■■■□□ 2.24
NUCKS1Q9H1E3 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC29.06■■■□□ 2.24
NUCKS1Q9H1E3 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
NUCKS1Q9H1E3 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
NUCKS1Q9H1E3 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
NUCKS1Q9H1E3 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
NUCKS1Q9H1E3 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
NUCKS1Q9H1E3 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC29.05■■■□□ 2.24
NUCKS1Q9H1E3 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
NUCKS1Q9H1E3 AL161658.1-201ENST00000623641 1967 ntBASIC29.04■■■□□ 2.24
NUCKS1Q9H1E3 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC29.03■■■□□ 2.24
NUCKS1Q9H1E3 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC29.03■■■□□ 2.24
NUCKS1Q9H1E3 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
NUCKS1Q9H1E3 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC29.02■■■□□ 2.24
NUCKS1Q9H1E3 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC29.02■■■□□ 2.24
NUCKS1Q9H1E3 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
NUCKS1Q9H1E3 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
NUCKS1Q9H1E3 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC28.99■■■□□ 2.23
NUCKS1Q9H1E3 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC28.99■■■□□ 2.23
NUCKS1Q9H1E3 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
NUCKS1Q9H1E3 ST7-AS1-201ENST00000456775 1889 ntBASIC28.97■■■□□ 2.23
NUCKS1Q9H1E3 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC28.97■■■□□ 2.23
NUCKS1Q9H1E3 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
NUCKS1Q9H1E3 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC28.97■■■□□ 2.23
NUCKS1Q9H1E3 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC28.96■■■□□ 2.23
NUCKS1Q9H1E3 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC28.96■■■□□ 2.23
NUCKS1Q9H1E3 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
NUCKS1Q9H1E3 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC28.95■■■□□ 2.22
NUCKS1Q9H1E3 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
NUCKS1Q9H1E3 RARRES2P7-201ENST00000567349 469 ntBASIC28.94■■■□□ 2.22
NUCKS1Q9H1E3 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC28.93■■■□□ 2.22
NUCKS1Q9H1E3 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC28.93■■■□□ 2.22
NUCKS1Q9H1E3 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
NUCKS1Q9H1E3 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
NUCKS1Q9H1E3 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC28.92■■■□□ 2.22
NUCKS1Q9H1E3 KLF16-203ENST00000592313 508 ntTSL 3 BASIC28.92■■■□□ 2.22
NUCKS1Q9H1E3 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC28.92■■■□□ 2.22
NUCKS1Q9H1E3 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
NUCKS1Q9H1E3 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
NUCKS1Q9H1E3 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
NUCKS1Q9H1E3 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
NUCKS1Q9H1E3 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
NUCKS1Q9H1E3 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC28.89■■■□□ 2.22
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms