RNA–Protein interactions for RNA: ENST00000245923.8

RTN2-201, Transcript of reticulon 2, humanhuman

TSL 1 (best) BASIC

Gene RTN2, Length 2,293 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN2-201ENST00000245923 NISCHQ9Y2I1 1504 aa56■■■■■ 6.55
RTN2-201ENST00000245923 CCDC180Q9P1Z9 1646 aa48.04■■■■■ 5.28
RTN2-201ENST00000245923 ZCCHC6Q5VYS8 1495 aaKnown RBP47.33■■■■■ 5.17
RTN2-201ENST00000245923 SHROOM4Q9ULL8 1493 aa46.92■■■■■ 5.1
RTN2-201ENST00000245923 DCAF1Q9Y4B6 1507 aa46.19■■■■■ 4.98
RTN2-201ENST00000245923 DCAF8L2P0C7V8 631 aa45.94■■■■■ 4.95
RTN2-201ENST00000245923 SUPT5HO00267 1087 aaKnown RBP45.85■■■■■ 4.93
RTN2-201ENST00000245923 MYO15BQ96JP2 1530 aa45.06■■■■■ 4.8
RTN2-201ENST00000245923 CHIC1Q5VXU3 224 aa44.61■■■■■ 4.73
RTN2-201ENST00000245923 ABCC9O60706 1549 aa44.59■■■■■ 4.73
RTN2-201ENST00000245923 SCRIBQ14160 1630 aa44.58■■■■■ 4.73
RTN2-201ENST00000245923 NACADO15069 1562 aa44.41■■■■■ 4.7
RTN2-201ENST00000245923 RSF1Q96T23 1441 aaPredicted RBP44.06■■■■■ 4.64
RTN2-201ENST00000245923 RB1CC1Q8TDY2 1594 aa43.7■■■■■ 4.59
RTN2-201ENST00000245923 CECR2Q9BXF3 1484 aa43.51■■■■■ 4.56
RTN2-201ENST00000245923 MROH2BQ7Z745 1585 aa43.4■■■■■ 4.54
RTN2-201ENST00000245923 WIZO95785 1651 aa43.16■■■■■ 4.5
RTN2-201ENST00000245923 BAZ1AQ9NRL2 1556 aaPredicted RBP43.08■■■■■ 4.49
RTN2-201ENST00000245923 LOC105371045A0A1W2PR82 267 aa43.06■■■■■ 4.48
RTN2-201ENST00000245923 UNC13AQ9UPW8 1703 aa43.06■■■■■ 4.48
RTN2-201ENST00000245923 TRIM41Q8WV44 630 aa42.91■■■■■ 4.46
RTN2-201ENST00000245923 SMARCA4P51532 1647 aa42.75■■■■■ 4.43
RTN2-201ENST00000245923 PCGF6Q9BYE7 350 aa42.62■■■■■ 4.41
RTN2-201ENST00000245923 TOP2AP11388 1531 aaKnown RBP42.62■■■■■ 4.41
RTN2-201ENST00000245923 EIF4G1Q04637 1599 aaKnown RBP42.59■■■■■ 4.41
RTN2-201ENST00000245923 HRCP23327 699 aa42.55■■■■■ 4.4
RTN2-201ENST00000245923 BICRAQ9NZM4 1560 aa42.49■■■■■ 4.39
RTN2-201ENST00000245923 SMARCA2P51531 1590 aa42.32■■■■■ 4.37
RTN2-201ENST00000245923 FAM9AQ8IZU1 332 aaPredicted RBP42.29■■■■■ 4.36
RTN2-201ENST00000245923 CCDC88BA6NC98 1476 aa42.29■■■■■ 4.36
RTN2-201ENST00000245923 PABPN1Q86U42 306 aaKnown RBP eCLIP42.16■■■■■ 4.34
RTN2-201ENST00000245923 TRIM26Q12899 539 aaPredicted RBP42.15■■■■■ 4.34
RTN2-201ENST00000245923 PEG3Q9GZU2 1588 aa42.1■■■■■ 4.33
RTN2-201ENST00000245923 ABCC8Q09428 1581 aa41.94■■■■■ 4.31
RTN2-201ENST00000245923 EHMT2Q96KQ7 1210 aa41.73■■■■■ 4.27
RTN2-201ENST00000245923 ATAD2BQ9ULI0 1458 aa41.68■■■■■ 4.26
RTN2-201ENST00000245923 BAZ1BQ9UIG0 1483 aaKnown RBP41.52■■■■■ 4.24
RTN2-201ENST00000245923 EEA1Q15075 1411 aa41.48■■■■■ 4.23
RTN2-201ENST00000245923 PPARGC1BQ86YN6 1023 aaKnown RBP41.45■■■■■ 4.23
RTN2-201ENST00000245923 SOGA1O94964 1423 aa41.45■■■■■ 4.23
RTN2-201ENST00000245923 WRNQ14191 1432 aaPredicted RBP eCLIP41.39■■■■■ 4.22
RTN2-201ENST00000245923 RUSC2Q8N2Y8 1516 aa41.25■■■■■ 4.19
RTN2-201ENST00000245923 CSRNP3Q8WYN3 585 aa41.23■■■■■ 4.19
RTN2-201ENST00000245923 SYNJ1O43426 1573 aa41.23■■■■■ 4.19
RTN2-201ENST00000245923 TNIKQ9UKE5 1360 aa41.22■■■■■ 4.19
RTN2-201ENST00000245923 CEP162Q5TB80 1403 aa41.15■■■■■ 4.18
RTN2-201ENST00000245923 ZEB1P37275 1124 aaPredicted RBP41.15■■■■■ 4.18
RTN2-201ENST00000245923 HMGXB3Q12766 1538 aa41.07■■■■■ 4.16
RTN2-201ENST00000245923 GOLGA3Q08378 1498 aa41.05■■■■■ 4.16
RTN2-201ENST00000245923 NCAPD3P42695 1498 aa41.02■■■■■ 4.16
RTN2-201ENST00000245923 KIF21BO75037 1637 aa40.93■■■■■ 4.14
RTN2-201ENST00000245923 CEP164Q9UPV0 1460 aa40.89■■■■■ 4.14
RTN2-201ENST00000245923 TOP2BQ02880 1626 aa40.88■■■■■ 4.13
RTN2-201ENST00000245923 UBTFP17480 764 aaKnown RBP40.87■■■■■ 4.13
RTN2-201ENST00000245923 BIVM-ERCC5R4GMW8 1640 aa40.8■■■■■ 4.12
RTN2-201ENST00000245923 CFTRP13569 1480 aa40.55■■■■■ 4.08
RTN2-201ENST00000245923 RAPGEF2Q9Y4G8 1499 aa40.52■■■■■ 4.08
RTN2-201ENST00000245923 CLIP1P30622 1438 aa40.48■■■■■ 4.07
RTN2-201ENST00000245923 CUX1P39880 1505 aa40.47■■■■■ 4.07
RTN2-201ENST00000245923 PRDM2Q13029 1718 aa40.43■■■■■ 4.06
RTN2-201ENST00000245923 ERICH3Q5RHP9 1530 aa40.36■■■■■ 4.05
RTN2-201ENST00000245923 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP40.33■■■■■ 4.05
RTN2-201ENST00000245923 TTBK1Q5TCY1 1321 aaPredicted RBP40.33■■■■■ 4.05
RTN2-201ENST00000245923 VPS8Q8N3P4 1428 aa40.32■■■■■ 4.05
RTN2-201ENST00000245923 PRXQ9BXM0 1461 aa40.32■■■■■ 4.04
RTN2-201ENST00000245923 CCER1Q8TC90 406 aaPredicted RBP40.27■■■■■ 4.04
RTN2-201ENST00000245923 KIF27Q86VH2 1401 aa40.19■■■■■ 4.02
RTN2-201ENST00000245923 CADPSQ9ULU8 1353 aa40.11■■■■■ 4.01
RTN2-201ENST00000245923 CC2D2AQ9P2K1 1620 aa40.1■■■■■ 4.01
RTN2-201ENST00000245923 APLP2Q06481 763 aa39.94■■■■□ 3.98
RTN2-201ENST00000245923 ARAP1Q96P48 1450 aa39.93■■■■□ 3.98
RTN2-201ENST00000245923 RANGAP1P46060 587 aaPredicted RBP39.89■■■■□ 3.98
RTN2-201ENST00000245923 CUX2O14529 1486 aa39.8■■■■□ 3.96
RTN2-201ENST00000245923 FGD5Q6ZNL6 1462 aa39.78■■■■□ 3.96
RTN2-201ENST00000245923 IGF1RP08069 1367 aa39.73■■■■□ 3.95
RTN2-201ENST00000245923 FANCD2Q9BXW9 1451 aa39.7■■■■□ 3.95
RTN2-201ENST00000245923 ARHGAP35Q9NRY4 1499 aa39.65■■■■□ 3.94
RTN2-201ENST00000245923 HNRNPUL2Q1KMD3 747 aaKnown RBP39.64■■■■□ 3.94
RTN2-201ENST00000245923 DNMBPQ6XZF7 1577 aa39.58■■■■□ 3.93
RTN2-201ENST00000245923 CARMIL1Q5VZK9 1371 aa39.54■■■■□ 3.92
RTN2-201ENST00000245923 KANK4Q5T7N3 995 aaPredicted RBP39.46■■■■□ 3.91
RTN2-201ENST00000245923 TOPBP1Q92547 1522 aa39.44■■■■□ 3.9
RTN2-201ENST00000245923 NESP48681 1621 aa39.42■■■■□ 3.9
RTN2-201ENST00000245923 ABCA10Q8WWZ4 1543 aa39.41■■■■□ 3.9
RTN2-201ENST00000245923 LAMC3Q9Y6N6 1575 aa39.38■■■■□ 3.89
RTN2-201ENST00000245923 POLA1P09884 1462 aaPredicted RBP39.37■■■■□ 3.89
RTN2-201ENST00000245923 RRBP1Q9P2E9 1410 aaKnown RBP39.36■■■■□ 3.89
RTN2-201ENST00000245923 RAD54L2Q9Y4B4 1467 aa39.32■■■■□ 3.88
RTN2-201ENST00000245923 MAP3K1Q13233 1512 aa39.3■■■■□ 3.88
RTN2-201ENST00000245923 DIEXFQ68CQ4 756 aaKnown RBP39.28■■■■□ 3.88
RTN2-201ENST00000245923 CUL7Q14999 1698 aa39.23■■■■□ 3.87
RTN2-201ENST00000245923 TIAM1Q13009 1591 aa39.22■■■■□ 3.87
RTN2-201ENST00000245923 ZNF316A6NFI3 1004 aaPredicted RBP39.19■■■■□ 3.86
RTN2-201ENST00000245923 WDR97A6NE52 1622 aa39.18■■■■□ 3.86
RTN2-201ENST00000245923 URB2Q14146 1524 aaKnown RBP39.16■■■■□ 3.86
RTN2-201ENST00000245923 CCNB3Q8WWL7 1395 aa39.13■■■■□ 3.85
RTN2-201ENST00000245923 CLSPNQ9HAW4 1339 aa39.13■■■■□ 3.85
RTN2-201ENST00000245923 FHAD1B1AJZ9 1412 aa39.11■■■■□ 3.85
RTN2-201ENST00000245923 CTTNBP2Q8WZ74 1663 aa39.06■■■■□ 3.84
RTN2-201ENST00000245923 DHX57Q6P158 1386 aaKnown RBP39.06■■■■□ 3.84
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms