RNA–Protein interactions for RNA: ENST00000402394.5

CGREF1-203, Transcript of cell growth regulator with EF-hand domain 1, humanhuman

APPRIS P2 TSL 2 BASIC

Gene CGREF1, Length 1,906 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CGREF1-203ENST00000402394 NISCHQ9Y2I1 1504 aa57.5■■■■■ 6.8
CGREF1-203ENST00000402394 CCDC180Q9P1Z9 1646 aa49.58■■■■■ 5.53
CGREF1-203ENST00000402394 ZCCHC6Q5VYS8 1495 aaKnown RBP48.51■■■■■ 5.36
CGREF1-203ENST00000402394 SHROOM4Q9ULL8 1493 aa47.73■■■■■ 5.23
CGREF1-203ENST00000402394 DCAF1Q9Y4B6 1507 aa47.48■■■■■ 5.19
CGREF1-203ENST00000402394 DCAF8L2P0C7V8 631 aa47.24■■■■■ 5.15
CGREF1-203ENST00000402394 MYO15BQ96JP2 1530 aa46.53■■■■■ 5.04
CGREF1-203ENST00000402394 ABCC9O60706 1549 aa46.43■■■■■ 5.02
CGREF1-203ENST00000402394 SUPT5HO00267 1087 aaKnown RBP46.4■■■■■ 5.02
CGREF1-203ENST00000402394 NACADO15069 1562 aa45.97■■■■■ 4.95
CGREF1-203ENST00000402394 SCRIBQ14160 1630 aa45.86■■■■■ 4.93
CGREF1-203ENST00000402394 RB1CC1Q8TDY2 1594 aa45.34■■■■■ 4.85
CGREF1-203ENST00000402394 RSF1Q96T23 1441 aaPredicted RBP45.04■■■■■ 4.8
CGREF1-203ENST00000402394 CHIC1Q5VXU3 224 aa44.94■■■■■ 4.78
CGREF1-203ENST00000402394 CECR2Q9BXF3 1484 aa44.67■■■■■ 4.74
CGREF1-203ENST00000402394 UNC13AQ9UPW8 1703 aa44.52■■■■■ 4.72
CGREF1-203ENST00000402394 MROH2BQ7Z745 1585 aa44.51■■■■■ 4.72
CGREF1-203ENST00000402394 BAZ1AQ9NRL2 1556 aaPredicted RBP44.29■■■■■ 4.68
CGREF1-203ENST00000402394 WIZO95785 1651 aa44.2■■■■■ 4.67
CGREF1-203ENST00000402394 BICRAQ9NZM4 1560 aa44.04■■■■■ 4.64
CGREF1-203ENST00000402394 SMARCA4P51532 1647 aa43.99■■■■■ 4.63
CGREF1-203ENST00000402394 PABPN1Q86U42 306 aaKnown RBP eCLIP43.83■■■■■ 4.61
CGREF1-203ENST00000402394 TOP2AP11388 1531 aaKnown RBP43.71■■■■■ 4.59
CGREF1-203ENST00000402394 TRIM41Q8WV44 630 aa43.5■■■■■ 4.55
CGREF1-203ENST00000402394 EIF4G1Q04637 1599 aaKnown RBP43.44■■■■■ 4.54
CGREF1-203ENST00000402394 PEG3Q9GZU2 1588 aa43.38■■■■■ 4.54
CGREF1-203ENST00000402394 SMARCA2P51531 1590 aa43.37■■■■■ 4.53
CGREF1-203ENST00000402394 CCDC88BA6NC98 1476 aa43.33■■■■■ 4.53
CGREF1-203ENST00000402394 LOC105371045A0A1W2PR82 267 aa43.3■■■■■ 4.52
CGREF1-203ENST00000402394 ATAD2BQ9ULI0 1458 aa43.03■■■■■ 4.48
CGREF1-203ENST00000402394 BAZ1BQ9UIG0 1483 aaKnown RBP42.83■■■■■ 4.45
CGREF1-203ENST00000402394 FAM9AQ8IZU1 332 aaPredicted RBP42.8■■■■■ 4.44
CGREF1-203ENST00000402394 ABCC8Q09428 1581 aa42.78■■■■■ 4.44
CGREF1-203ENST00000402394 HMGXB3Q12766 1538 aa42.47■■■■■ 4.39
CGREF1-203ENST00000402394 NCAPD3P42695 1498 aa42.46■■■■■ 4.39
CGREF1-203ENST00000402394 PCGF6Q9BYE7 350 aa42.36■■■■■ 4.37
CGREF1-203ENST00000402394 WRNQ14191 1432 aaPredicted RBP eCLIP42.34■■■■■ 4.37
CGREF1-203ENST00000402394 EEA1Q15075 1411 aa42.21■■■■■ 4.35
CGREF1-203ENST00000402394 EHMT2Q96KQ7 1210 aa42.2■■■■■ 4.35
CGREF1-203ENST00000402394 SOGA1O94964 1423 aa42.19■■■■■ 4.35
CGREF1-203ENST00000402394 SYNJ1O43426 1573 aa42.15■■■■■ 4.34
CGREF1-203ENST00000402394 TRIM26Q12899 539 aaPredicted RBP42.06■■■■■ 4.32
CGREF1-203ENST00000402394 RUSC2Q8N2Y8 1516 aa41.99■■■■■ 4.31
CGREF1-203ENST00000402394 CC2D2AQ9P2K1 1620 aa41.98■■■■■ 4.31
CGREF1-203ENST00000402394 HRCP23327 699 aa41.95■■■■■ 4.31
CGREF1-203ENST00000402394 CSRNP3Q8WYN3 585 aa41.94■■■■■ 4.3
CGREF1-203ENST00000402394 TOP2BQ02880 1626 aa41.86■■■■■ 4.29
CGREF1-203ENST00000402394 CFTRP13569 1480 aa41.82■■■■■ 4.29
CGREF1-203ENST00000402394 TNIKQ9UKE5 1360 aa41.79■■■■■ 4.28
CGREF1-203ENST00000402394 BIVM-ERCC5R4GMW8 1640 aa41.78■■■■■ 4.28
CGREF1-203ENST00000402394 GOLGA3Q08378 1498 aa41.71■■■■■ 4.27
CGREF1-203ENST00000402394 CEP162Q5TB80 1403 aa41.66■■■■■ 4.26
CGREF1-203ENST00000402394 KIF21BO75037 1637 aa41.63■■■■■ 4.26
CGREF1-203ENST00000402394 CEP164Q9UPV0 1460 aa41.6■■■■■ 4.25
CGREF1-203ENST00000402394 PRDM2Q13029 1718 aa41.59■■■■■ 4.25
CGREF1-203ENST00000402394 CUX1P39880 1505 aa41.55■■■■■ 4.24
CGREF1-203ENST00000402394 UBTFP17480 764 aaKnown RBP41.5■■■■■ 4.23
CGREF1-203ENST00000402394 CADPSQ9ULU8 1353 aa41.47■■■■■ 4.23
CGREF1-203ENST00000402394 RAPGEF2Q9Y4G8 1499 aa41.27■■■■■ 4.2
CGREF1-203ENST00000402394 PPARGC1BQ86YN6 1023 aaKnown RBP41.2■■■■■ 4.19
CGREF1-203ENST00000402394 PRXQ9BXM0 1461 aa41.16■■■■■ 4.18
CGREF1-203ENST00000402394 ERICH3Q5RHP9 1530 aa41.16■■■■■ 4.18
CGREF1-203ENST00000402394 KIF27Q86VH2 1401 aa41.16■■■■■ 4.18
CGREF1-203ENST00000402394 CLIP1P30622 1438 aa41.1■■■■■ 4.17
CGREF1-203ENST00000402394 DNAJC5BQ9UF47 199 aa41.08■■■■■ 4.17
CGREF1-203ENST00000402394 FANCD2Q9BXW9 1451 aa41.02■■■■■ 4.16
CGREF1-203ENST00000402394 FGD5Q6ZNL6 1462 aa40.92■■■■■ 4.14
CGREF1-203ENST00000402394 VPS8Q8N3P4 1428 aa40.88■■■■■ 4.13
CGREF1-203ENST00000402394 ZEB1P37275 1124 aaPredicted RBP40.85■■■■■ 4.13
CGREF1-203ENST00000402394 CUX2O14529 1486 aa40.85■■■■■ 4.13
CGREF1-203ENST00000402394 NESP48681 1621 aa40.84■■■■■ 4.13
CGREF1-203ENST00000402394 LAMC3Q9Y6N6 1575 aa40.82■■■■■ 4.13
CGREF1-203ENST00000402394 DNMBPQ6XZF7 1577 aa40.81■■■■■ 4.12
CGREF1-203ENST00000402394 IGF1RP08069 1367 aa40.73■■■■■ 4.11
CGREF1-203ENST00000402394 TOPBP1Q92547 1522 aa40.7■■■■■ 4.11
CGREF1-203ENST00000402394 TTBK1Q5TCY1 1321 aaPredicted RBP40.66■■■■■ 4.1
CGREF1-203ENST00000402394 ARAP1Q96P48 1450 aa40.59■■■■■ 4.09
CGREF1-203ENST00000402394 RANGAP1P46060 587 aaPredicted RBP40.59■■■■■ 4.09
CGREF1-203ENST00000402394 POLA1P09884 1462 aaPredicted RBP40.58■■■■■ 4.09
CGREF1-203ENST00000402394 ABCA10Q8WWZ4 1543 aa40.56■■■■■ 4.08
CGREF1-203ENST00000402394 CARMIL1Q5VZK9 1371 aa40.52■■■■■ 4.08
CGREF1-203ENST00000402394 RAD54L2Q9Y4B4 1467 aa40.5■■■■■ 4.07
CGREF1-203ENST00000402394 PDS5BQ9NTI5 1447 aa40.49■■■■■ 4.07
CGREF1-203ENST00000402394 URB2Q14146 1524 aaKnown RBP40.48■■■■■ 4.07
CGREF1-203ENST00000402394 APLP2Q06481 763 aa40.46■■■■■ 4.07
CGREF1-203ENST00000402394 ARHGAP35Q9NRY4 1499 aa40.4■■■■■ 4.06
CGREF1-203ENST00000402394 WDR97A6NE52 1622 aa40.33■■■■■ 4.05
CGREF1-203ENST00000402394 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP40.31■■■■■ 4.04
CGREF1-203ENST00000402394 KIF21AQ7Z4S6 1674 aa40.29■■■■■ 4.04
CGREF1-203ENST00000402394 CUL7Q14999 1698 aa40.25■■■■■ 4.03
CGREF1-203ENST00000402394 CCER1Q8TC90 406 aaPredicted RBP40.24■■■■■ 4.03
CGREF1-203ENST00000402394 ABCA5Q8WWZ7 1642 aa40.15■■■■■ 4.02
CGREF1-203ENST00000402394 KANK4Q5T7N3 995 aaPredicted RBP40.03■■■■■ 4
CGREF1-203ENST00000402394 GAPVD1Q14C86 1478 aa40.02■■■■■ 4
CGREF1-203ENST00000402394 TDRD9Q8NDG6 1382 aaKnown RBP40.01■■■■□ 3.99
CGREF1-203ENST00000402394 TARBP1Q13395 1621 aaKnown RBP40■■■■□ 3.99
CGREF1-203ENST00000402394 CTTNBP2Q8WZ74 1663 aa39.96■■■■□ 3.99
CGREF1-203ENST00000402394 MAP3K1Q13233 1512 aa39.95■■■■□ 3.99
CGREF1-203ENST00000402394 MRC2Q9UBG0 1479 aa39.93■■■■□ 3.98
CGREF1-203ENST00000402394 HNRNPUL2Q1KMD3 747 aaKnown RBP39.93■■■■□ 3.98
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms