RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 NISCHQ9Y2I1 1504 aa59.37■■■■■ 7.09
LDB1-202ENST00000425280 CCDC180Q9P1Z9 1646 aa51.56■■■■■ 5.84
LDB1-202ENST00000425280 ZCCHC6Q5VYS8 1495 aaKnown RBP49.94■■■■■ 5.58
LDB1-202ENST00000425280 DCAF1Q9Y4B6 1507 aa49.03■■■■■ 5.44
LDB1-202ENST00000425280 DCAF8L2P0C7V8 631 aa48.99■■■■■ 5.43
LDB1-202ENST00000425280 SHROOM4Q9ULL8 1493 aa48.76■■■■■ 5.4
LDB1-202ENST00000425280 ABCC9O60706 1549 aa48.56■■■■■ 5.36
LDB1-202ENST00000425280 MYO15BQ96JP2 1530 aa48.31■■■■■ 5.32
LDB1-202ENST00000425280 NACADO15069 1562 aa47.95■■■■■ 5.27
LDB1-202ENST00000425280 SCRIBQ14160 1630 aa47.56■■■■■ 5.2
LDB1-202ENST00000425280 RB1CC1Q8TDY2 1594 aa47.46■■■■■ 5.19
LDB1-202ENST00000425280 SUPT5HO00267 1087 aaKnown RBP47.06■■■■■ 5.12
LDB1-202ENST00000425280 UNC13AQ9UPW8 1703 aa46.6■■■■■ 5.05
LDB1-202ENST00000425280 RSF1Q96T23 1441 aaPredicted RBP46.21■■■■■ 4.99
LDB1-202ENST00000425280 CECR2Q9BXF3 1484 aa46.17■■■■■ 4.98
LDB1-202ENST00000425280 BICRAQ9NZM4 1560 aa46.1■■■■■ 4.97
LDB1-202ENST00000425280 MROH2BQ7Z745 1585 aa45.92■■■■■ 4.94
LDB1-202ENST00000425280 PABPN1Q86U42 306 aaKnown RBP eCLIP45.89■■■■■ 4.946e-6■■□□□ 12.8
LDB1-202ENST00000425280 BAZ1AQ9NRL2 1556 aaPredicted RBP45.79■■■■■ 4.92
LDB1-202ENST00000425280 WIZO95785 1651 aa45.57■■■■■ 4.89
LDB1-202ENST00000425280 SMARCA4P51532 1647 aa45.57■■■■■ 4.89
LDB1-202ENST00000425280 CHIC1Q5VXU3 224 aa45.22■■■■■ 4.83
LDB1-202ENST00000425280 TOP2AP11388 1531 aaKnown RBP45.05■■■■■ 4.8
LDB1-202ENST00000425280 PEG3Q9GZU2 1588 aa44.97■■■■■ 4.79
LDB1-202ENST00000425280 ATAD2BQ9ULI0 1458 aa44.74■■■■■ 4.75
LDB1-202ENST00000425280 SMARCA2P51531 1590 aa44.68■■■■■ 4.74
LDB1-202ENST00000425280 EIF4G1Q04637 1599 aaKnown RBP44.65■■■■■ 4.74
LDB1-202ENST00000425280 CCDC88BA6NC98 1476 aa44.64■■■■■ 4.74
LDB1-202ENST00000425280 BAZ1BQ9UIG0 1483 aaKnown RBP44.5■■■■■ 4.71
LDB1-202ENST00000425280 NCAPD3P42695 1498 aa44.28■■■■■ 4.68
LDB1-202ENST00000425280 HMGXB3Q12766 1538 aa44.23■■■■■ 4.67
LDB1-202ENST00000425280 TRIM41Q8WV44 630 aa44.18■■■■■ 4.66
LDB1-202ENST00000425280 CC2D2AQ9P2K1 1620 aa43.93■■■■■ 4.62
LDB1-202ENST00000425280 ABCC8Q09428 1581 aa43.84■■■■■ 4.61
LDB1-202ENST00000425280 LOC105371045A0A1W2PR82 267 aa43.55■■■■■ 4.56
LDB1-202ENST00000425280 WRNQ14191 1432 aaPredicted RBP eCLIP43.47■■■■■ 4.55
LDB1-202ENST00000425280 FAM9AQ8IZU1 332 aaPredicted RBP43.45■■■■■ 4.55
LDB1-202ENST00000425280 CFTRP13569 1480 aa43.4■■■■■ 4.54
LDB1-202ENST00000425280 SYNJ1O43426 1573 aa43.31■■■■■ 4.52
LDB1-202ENST00000425280 CADPSQ9ULU8 1353 aa43.18■■■■■ 4.5
LDB1-202ENST00000425280 PRDM2Q13029 1718 aa43.18■■■■■ 4.5
LDB1-202ENST00000425280 SOGA1O94964 1423 aa43.09■■■■■ 4.49
LDB1-202ENST00000425280 TOP2BQ02880 1626 aa43.07■■■■■ 4.49
LDB1-202ENST00000425280 BIVM-ERCC5R4GMW8 1640 aa43.01■■■■■ 4.48
LDB1-202ENST00000425280 EEA1Q15075 1411 aa42.97■■■■■ 4.47
LDB1-202ENST00000425280 RUSC2Q8N2Y8 1516 aa42.93■■■■■ 4.46
LDB1-202ENST00000425280 CUX1P39880 1505 aa42.91■■■■■ 4.46
LDB1-202ENST00000425280 EHMT2Q96KQ7 1210 aa42.86■■■■■ 4.45
LDB1-202ENST00000425280 DNAJC5BQ9UF47 199 aa42.83■■■■■ 4.45
LDB1-202ENST00000425280 NESP48681 1621 aa42.76■■■■■ 4.44
LDB1-202ENST00000425280 CSRNP3Q8WYN3 585 aa42.76■■■■■ 4.44
LDB1-202ENST00000425280 FANCD2Q9BXW9 1451 aa42.72■■■■■ 4.43
LDB1-202ENST00000425280 LAMC3Q9Y6N6 1575 aa42.7■■■■■ 4.43
LDB1-202ENST00000425280 KIF21BO75037 1637 aa42.43■■■■■ 4.38
LDB1-202ENST00000425280 GOLGA3Q08378 1498 aa42.43■■■■■ 4.38
LDB1-202ENST00000425280 CEP164Q9UPV0 1460 aa42.4■■■■■ 4.38
LDB1-202ENST00000425280 DNMBPQ6XZF7 1577 aa42.38■■■■■ 4.37
LDB1-202ENST00000425280 FGD5Q6ZNL6 1462 aa42.37■■■■■ 4.37
LDB1-202ENST00000425280 TNIKQ9UKE5 1360 aa42.37■■■■■ 4.37
LDB1-202ENST00000425280 PDS5BQ9NTI5 1447 aa42.36■■■■■ 4.37
LDB1-202ENST00000425280 KIF27Q86VH2 1401 aa42.32■■■■■ 4.36
LDB1-202ENST00000425280 TOPBP1Q92547 1522 aa42.3■■■■■ 4.36
LDB1-202ENST00000425280 UBTFP17480 764 aaKnown RBP42.26■■■■■ 4.36
LDB1-202ENST00000425280 KIF21AQ7Z4S6 1674 aa42.22■■■■■ 4.35
LDB1-202ENST00000425280 URB2Q14146 1524 aaKnown RBP42.19■■■■■ 4.34
LDB1-202ENST00000425280 CEP162Q5TB80 1403 aa42.19■■■■■ 4.34
LDB1-202ENST00000425280 RAPGEF2Q9Y4G8 1499 aa42.18■■■■■ 4.34
LDB1-202ENST00000425280 CUX2O14529 1486 aa42.17■■■■■ 4.34
LDB1-202ENST00000425280 PRXQ9BXM0 1461 aa42.14■■■■■ 4.34
LDB1-202ENST00000425280 POLA1P09884 1462 aaPredicted RBP42.12■■■■■ 4.33
LDB1-202ENST00000425280 ERICH3Q5RHP9 1530 aa42.07■■■■■ 4.33
LDB1-202ENST00000425280 RAD54L2Q9Y4B4 1467 aa42.02■■■■■ 4.32
LDB1-202ENST00000425280 ABCA10Q8WWZ4 1543 aa41.99■■■■■ 4.31
LDB1-202ENST00000425280 IGF1RP08069 1367 aa41.95■■■■■ 4.31
LDB1-202ENST00000425280 PCGF6Q9BYE7 350 aa41.86■■■■■ 4.29
LDB1-202ENST00000425280 WDR97A6NE52 1622 aa41.83■■■■■ 4.29
LDB1-202ENST00000425280 MRC2Q9UBG0 1479 aa41.82■■■■■ 4.29
LDB1-202ENST00000425280 CLIP1P30622 1438 aa41.78■■■■■ 4.28
LDB1-202ENST00000425280 TRIM26Q12899 539 aaPredicted RBP41.73■■■■■ 4.27
LDB1-202ENST00000425280 CARMIL1Q5VZK9 1371 aa41.73■■■■■ 4.27
LDB1-202ENST00000425280 TARBP1Q13395 1621 aaKnown RBP41.64■■■■■ 4.26
LDB1-202ENST00000425280 ABCA5Q8WWZ7 1642 aa41.63■■■■■ 4.25
LDB1-202ENST00000425280 WDR62O43379 1518 aa41.59■■■■■ 4.25
LDB1-202ENST00000425280 TDRD9Q8NDG6 1382 aaKnown RBP41.58■■■■■ 4.25
LDB1-202ENST00000425280 ERCC6Q03468 1493 aa41.56■■■■■ 4.24
LDB1-202ENST00000425280 CUL7Q14999 1698 aa41.55■■■■■ 4.24
LDB1-202ENST00000425280 RANGAP1P46060 587 aaPredicted RBP41.54■■■■■ 4.24
LDB1-202ENST00000425280 GAPVD1Q14C86 1478 aa41.52■■■■■ 4.24
LDB1-202ENST00000425280 PPARGC1BQ86YN6 1023 aaKnown RBP41.5■■■■■ 4.23
LDB1-202ENST00000425280 VPS8Q8N3P4 1428 aa41.45■■■■■ 4.23
LDB1-202ENST00000425280 THOC2Q8NI27 1593 aaKnown RBP41.41■■■■■ 4.22
LDB1-202ENST00000425280 ARAP1Q96P48 1450 aa41.36■■■■■ 4.21
LDB1-202ENST00000425280 IFT140Q96RY7 1462 aa41.35■■■■■ 4.21
LDB1-202ENST00000425280 ARHGAP35Q9NRY4 1499 aa41.28■■■■■ 4.2
LDB1-202ENST00000425280 PBRM1Q86U86 1689 aa41.27■■■■■ 4.2
LDB1-202ENST00000425280 AQRO60306 1485 aaKnown RBP eCLIP41.26■■■■■ 4.24e-7■■■■■ 29.4
LDB1-202ENST00000425280 ZNF608Q9ULD9 1512 aaPredicted RBP41.19■■■■■ 4.18
LDB1-202ENST00000425280 CTTNBP2Q8WZ74 1663 aa41.15■■■■■ 4.18
LDB1-202ENST00000425280 GRIN2BQ13224 1484 aa41.13■■■■■ 4.18
LDB1-202ENST00000425280 TTBK1Q5TCY1 1321 aaPredicted RBP41.09■■■■■ 4.17
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms