RNA–Protein interactions for RNA: ENST00000360238.6

CUEDC1-201, Transcript of CUE domain containing 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CUEDC1, Length 2,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1-201ENST00000360238 NISCHQ9Y2I1 1504 aa56.23■■■■■ 6.59
CUEDC1-201ENST00000360238 CCDC180Q9P1Z9 1646 aa48.35■■■■■ 5.33
CUEDC1-201ENST00000360238 ZCCHC6Q5VYS8 1495 aaKnown RBP47.55■■■■■ 5.2
CUEDC1-201ENST00000360238 SHROOM4Q9ULL8 1493 aa47■■■■■ 5.12
CUEDC1-201ENST00000360238 DCAF1Q9Y4B6 1507 aa46.43■■■■■ 5.02
CUEDC1-201ENST00000360238 DCAF8L2P0C7V8 631 aa45.99■■■■■ 4.95
CUEDC1-201ENST00000360238 SUPT5HO00267 1087 aaKnown RBP45.89■■■■■ 4.94
CUEDC1-201ENST00000360238 MYO15BQ96JP2 1530 aa45.31■■■■■ 4.84
CUEDC1-201ENST00000360238 ABCC9O60706 1549 aa44.84■■■■■ 4.77
CUEDC1-201ENST00000360238 SCRIBQ14160 1630 aa44.78■■■■■ 4.76
CUEDC1-201ENST00000360238 CHIC1Q5VXU3 224 aa44.66■■■■■ 4.74
CUEDC1-201ENST00000360238 NACADO15069 1562 aa44.65■■■■■ 4.74
CUEDC1-201ENST00000360238 RSF1Q96T23 1441 aaPredicted RBP44.19■■■■■ 4.66
CUEDC1-201ENST00000360238 RB1CC1Q8TDY2 1594 aa43.95■■■■■ 4.63
CUEDC1-201ENST00000360238 CECR2Q9BXF3 1484 aa43.63■■■■■ 4.57
CUEDC1-201ENST00000360238 MROH2BQ7Z745 1585 aa43.54■■■■■ 4.56
CUEDC1-201ENST00000360238 WIZO95785 1651 aa43.32■■■■■ 4.53
CUEDC1-201ENST00000360238 UNC13AQ9UPW8 1703 aa43.3■■■■■ 4.52
CUEDC1-201ENST00000360238 BAZ1AQ9NRL2 1556 aaPredicted RBP43.3■■■■■ 4.52
CUEDC1-201ENST00000360238 LOC105371045A0A1W2PR82 267 aa43.05■■■■■ 4.48
CUEDC1-201ENST00000360238 TRIM41Q8WV44 630 aa42.99■■■■■ 4.47
CUEDC1-201ENST00000360238 SMARCA4P51532 1647 aa42.96■■■■■ 4.47
CUEDC1-201ENST00000360238 TOP2AP11388 1531 aaKnown RBP42.83■■■■■ 4.45
CUEDC1-201ENST00000360238 EIF4G1Q04637 1599 aaKnown RBP42.8■■■■■ 4.44
CUEDC1-201ENST00000360238 BICRAQ9NZM4 1560 aa42.67■■■■■ 4.42
CUEDC1-201ENST00000360238 PCGF6Q9BYE7 350 aa42.64■■■■■ 4.42
CUEDC1-201ENST00000360238 HRCP23327 699 aa42.59■■■■■ 4.41
CUEDC1-201ENST00000360238 SMARCA2P51531 1590 aa42.51■■■■■ 4.4
CUEDC1-201ENST00000360238 CCDC88BA6NC98 1476 aa42.42■■■■■ 4.38
CUEDC1-201ENST00000360238 PEG3Q9GZU2 1588 aa42.33■■■■■ 4.37
CUEDC1-201ENST00000360238 FAM9AQ8IZU1 332 aaPredicted RBP42.32■■■■■ 4.36
CUEDC1-201ENST00000360238 PABPN1Q86U42 306 aaKnown RBP eCLIP42.23■■■■■ 4.35
CUEDC1-201ENST00000360238 TRIM26Q12899 539 aaPredicted RBP42.21■■■■■ 4.35
CUEDC1-201ENST00000360238 ABCC8Q09428 1581 aa42.09■■■■■ 4.33
CUEDC1-201ENST00000360238 ATAD2BQ9ULI0 1458 aa41.85■■■■■ 4.29
CUEDC1-201ENST00000360238 EHMT2Q96KQ7 1210 aa41.73■■■■■ 4.27
CUEDC1-201ENST00000360238 BAZ1BQ9UIG0 1483 aaKnown RBP41.71■■■■■ 4.27
CUEDC1-201ENST00000360238 EEA1Q15075 1411 aa41.67■■■■■ 4.26
CUEDC1-201ENST00000360238 WRNQ14191 1432 aaPredicted RBP eCLIP41.55■■■■■ 4.24
CUEDC1-201ENST00000360238 SOGA1O94964 1423 aa41.55■■■■■ 4.24
CUEDC1-201ENST00000360238 PPARGC1BQ86YN6 1023 aaKnown RBP41.42■■■■■ 4.22
CUEDC1-201ENST00000360238 SYNJ1O43426 1573 aa41.4■■■■■ 4.22
CUEDC1-201ENST00000360238 TNIKQ9UKE5 1360 aa41.34■■■■■ 4.21
CUEDC1-201ENST00000360238 RUSC2Q8N2Y8 1516 aa41.32■■■■■ 4.21
CUEDC1-201ENST00000360238 HMGXB3Q12766 1538 aa41.31■■■■■ 4.2
CUEDC1-201ENST00000360238 CSRNP3Q8WYN3 585 aa41.3■■■■■ 4.2
CUEDC1-201ENST00000360238 CEP162Q5TB80 1403 aa41.29■■■■■ 4.2
CUEDC1-201ENST00000360238 ZEB1P37275 1124 aaPredicted RBP41.25■■■■■ 4.19
CUEDC1-201ENST00000360238 GOLGA3Q08378 1498 aa41.22■■■■■ 4.19
CUEDC1-201ENST00000360238 NCAPD3P42695 1498 aa41.19■■■■■ 4.18
CUEDC1-201ENST00000360238 KIF21BO75037 1637 aa41.14■■■■■ 4.18
CUEDC1-201ENST00000360238 TOP2BQ02880 1626 aa41.07■■■■■ 4.17
CUEDC1-201ENST00000360238 CEP164Q9UPV0 1460 aa41.06■■■■■ 4.16
CUEDC1-201ENST00000360238 BIVM-ERCC5R4GMW8 1640 aa41.02■■■■■ 4.16
CUEDC1-201ENST00000360238 UBTFP17480 764 aaKnown RBP40.95■■■■■ 4.15
CUEDC1-201ENST00000360238 PRDM2Q13029 1718 aa40.72■■■■■ 4.11
CUEDC1-201ENST00000360238 CFTRP13569 1480 aa40.72■■■■■ 4.11
CUEDC1-201ENST00000360238 RAPGEF2Q9Y4G8 1499 aa40.64■■■■■ 4.1
CUEDC1-201ENST00000360238 CUX1P39880 1505 aa40.62■■■■■ 4.09
CUEDC1-201ENST00000360238 CLIP1P30622 1438 aa40.61■■■■■ 4.09
CUEDC1-201ENST00000360238 ERICH3Q5RHP9 1530 aa40.57■■■■■ 4.08
CUEDC1-201ENST00000360238 VPS8Q8N3P4 1428 aa40.47■■■■■ 4.07
CUEDC1-201ENST00000360238 PRXQ9BXM0 1461 aa40.46■■■■■ 4.07
CUEDC1-201ENST00000360238 TTBK1Q5TCY1 1321 aaPredicted RBP40.35■■■■■ 4.05
CUEDC1-201ENST00000360238 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP40.35■■■■■ 4.05
CUEDC1-201ENST00000360238 KIF27Q86VH2 1401 aa40.34■■■■■ 4.05
CUEDC1-201ENST00000360238 CCER1Q8TC90 406 aaPredicted RBP40.33■■■■■ 4.05
CUEDC1-201ENST00000360238 CC2D2AQ9P2K1 1620 aa40.3■■■■■ 4.04
CUEDC1-201ENST00000360238 CADPSQ9ULU8 1353 aa40.25■■■■■ 4.03
CUEDC1-201ENST00000360238 ARAP1Q96P48 1450 aa40.07■■■■■ 4
CUEDC1-201ENST00000360238 APLP2Q06481 763 aa40.05■■■■■ 4
CUEDC1-201ENST00000360238 CUX2O14529 1486 aa39.95■■■■□ 3.99
CUEDC1-201ENST00000360238 FGD5Q6ZNL6 1462 aa39.94■■■■□ 3.98
CUEDC1-201ENST00000360238 RANGAP1P46060 587 aaPredicted RBP39.91■■■■□ 3.98
CUEDC1-201ENST00000360238 FANCD2Q9BXW9 1451 aa39.86■■■■□ 3.97
CUEDC1-201ENST00000360238 IGF1RP08069 1367 aa39.82■■■■□ 3.97
CUEDC1-201ENST00000360238 DNMBPQ6XZF7 1577 aa39.79■■■■□ 3.96
CUEDC1-201ENST00000360238 ARHGAP35Q9NRY4 1499 aa39.78■■■■□ 3.96
CUEDC1-201ENST00000360238 HNRNPUL2Q1KMD3 747 aaKnown RBP39.68■■■■□ 3.94
CUEDC1-201ENST00000360238 CARMIL1Q5VZK9 1371 aa39.66■■■■□ 3.94
CUEDC1-201ENST00000360238 TOPBP1Q92547 1522 aa39.61■■■■□ 3.93
CUEDC1-201ENST00000360238 LAMC3Q9Y6N6 1575 aa39.6■■■■□ 3.93
CUEDC1-201ENST00000360238 ABCA10Q8WWZ4 1543 aa39.59■■■■□ 3.93
CUEDC1-201ENST00000360238 NESP48681 1621 aa39.54■■■■□ 3.92
CUEDC1-201ENST00000360238 POLA1P09884 1462 aaPredicted RBP39.53■■■■□ 3.92
CUEDC1-201ENST00000360238 RRBP1Q9P2E9 1410 aaKnown RBP39.51■■■■□ 3.91
CUEDC1-201ENST00000360238 KANK4Q5T7N3 995 aaPredicted RBP39.5■■■■□ 3.91
CUEDC1-201ENST00000360238 MAP3K1Q13233 1512 aa39.48■■■■□ 3.91
CUEDC1-201ENST00000360238 CUL7Q14999 1698 aa39.46■■■■□ 3.91
CUEDC1-201ENST00000360238 RAD54L2Q9Y4B4 1467 aa39.43■■■■□ 3.9
CUEDC1-201ENST00000360238 WDR97A6NE52 1622 aa39.41■■■■□ 3.9
CUEDC1-201ENST00000360238 TIAM1Q13009 1591 aa39.39■■■■□ 3.9
CUEDC1-201ENST00000360238 DIEXFQ68CQ4 756 aaKnown RBP39.32■■■■□ 3.88
CUEDC1-201ENST00000360238 URB2Q14146 1524 aaKnown RBP39.31■■■■□ 3.88
CUEDC1-201ENST00000360238 CTTNBP2Q8WZ74 1663 aa39.29■■■■□ 3.88
CUEDC1-201ENST00000360238 FHAD1B1AJZ9 1412 aa39.29■■■■□ 3.88
CUEDC1-201ENST00000360238 CFAP43Q8NDM7 1665 aa39.26■■■■□ 3.88
CUEDC1-201ENST00000360238 EFCAB5A4FU69 1503 aa39.26■■■■□ 3.88
CUEDC1-201ENST00000360238 CLSPNQ9HAW4 1339 aa39.26■■■■□ 3.88
CUEDC1-201ENST00000360238 CCNB3Q8WWL7 1395 aa39.25■■■■□ 3.87
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms