RNA–Protein interactions for RNA: ENST00000599699.2

SSBP4-206, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 2 BASIC

Gene SSBP4, Length 793 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-206ENST00000599699 NISCHQ9Y2I1 1504 aa68.4■■■■■ 8.54
SSBP4-206ENST00000599699 CCDC180Q9P1Z9 1646 aa60.78■■■■■ 7.32
SSBP4-206ENST00000599699 ABCC9O60706 1549 aa59.75■■■■■ 7.16
SSBP4-206ENST00000599699 DCAF8L2P0C7V8 631 aa57.45■■■■■ 6.79
SSBP4-206ENST00000599699 RB1CC1Q8TDY2 1594 aa57.35■■■■■ 6.77
SSBP4-206ENST00000599699 NACADO15069 1562 aa57.23■■■■■ 6.75
SSBP4-206ENST00000599699 ZCCHC6Q5VYS8 1495 aaKnown RBP56.93■■■■■ 6.7
SSBP4-206ENST00000599699 MYO15BQ96JP2 1530 aa56.79■■■■■ 6.68
SSBP4-206ENST00000599699 DCAF1Q9Y4B6 1507 aa56.52■■■■■ 6.64
SSBP4-206ENST00000599699 UNC13AQ9UPW8 1703 aa55.94■■■■■ 6.55
SSBP4-206ENST00000599699 PABPN1Q86U42 306 aaKnown RBP eCLIP55.89■■■■■ 6.548e-9■■■■□ 25.1
SSBP4-206ENST00000599699 SCRIBQ14160 1630 aa55.57■■■■■ 6.49
SSBP4-206ENST00000599699 BICRAQ9NZM4 1560 aa55.57■■■■■ 6.49
SSBP4-206ENST00000599699 SHROOM4Q9ULL8 1493 aa54.96■■■■■ 6.39
SSBP4-206ENST00000599699 DNAJC5BQ9UF47 199 aa54.93■■■■■ 6.38
SSBP4-206ENST00000599699 EIF4G1Q04637 1599 aaKnown RBP54.16■■■■■ 6.26
SSBP4-206ENST00000599699 CC2D2AQ9P2K1 1620 aa53.97■■■■■ 6.23
SSBP4-206ENST00000599699 CECR2Q9BXF3 1484 aa53.69■■■■■ 6.19
SSBP4-206ENST00000599699 SMARCA4P51532 1647 aa53.09■■■■■ 6.09
SSBP4-206ENST00000599699 BAZ1AQ9NRL2 1556 aaPredicted RBP53.02■■■■■ 6.08
SSBP4-206ENST00000599699 ATAD2BQ9ULI0 1458 aa52.86■■■■■ 6.05
SSBP4-206ENST00000599699 NCAPD3P42695 1498 aa52.82■■■■■ 6.05
SSBP4-206ENST00000599699 SMARCA2P51531 1590 aa52.79■■■■■ 6.04
SSBP4-206ENST00000599699 MROH2BQ7Z745 1585 aa52.73■■■■■ 6.03
SSBP4-206ENST00000599699 HMGXB3Q12766 1538 aa52.53■■■■■ 6
SSBP4-206ENST00000599699 PEG3Q9GZU2 1588 aa52.51■■■■■ 6
SSBP4-206ENST00000599699 BAZ1BQ9UIG0 1483 aaKnown RBP52.46■■■■■ 5.99
SSBP4-206ENST00000599699 WIZO95785 1651 aa52.15■■■■■ 5.94
SSBP4-206ENST00000599699 RSF1Q96T23 1441 aaPredicted RBP52.1■■■■■ 5.93
SSBP4-206ENST00000599699 NESP48681 1621 aa51.64■■■■■ 5.86
SSBP4-206ENST00000599699 TOP2AP11388 1531 aaKnown RBP51.59■■■■■ 5.85
SSBP4-206ENST00000599699 ERCC6Q03468 1493 aa51.55■■■■■ 5.84
SSBP4-206ENST00000599699 LAMC3Q9Y6N6 1575 aa51.44■■■■■ 5.82
SSBP4-206ENST00000599699 CADPSQ9ULU8 1353 aa51.33■■■■■ 5.81
SSBP4-206ENST00000599699 PDS5BQ9NTI5 1447 aa51.18■■■■■ 5.78
SSBP4-206ENST00000599699 CCDC88BA6NC98 1476 aa51.02■■■■■ 5.76
SSBP4-206ENST00000599699 KIF21AQ7Z4S6 1674 aa50.96■■■■■ 5.75
SSBP4-206ENST00000599699 CFTRP13569 1480 aa50.96■■■■■ 5.75
SSBP4-206ENST00000599699 CUX2O14529 1486 aa50.95■■■■■ 5.75
SSBP4-206ENST00000599699 SUPT5HO00267 1087 aaKnown RBP50.87■■■■■ 5.73
SSBP4-206ENST00000599699 THOC2Q8NI27 1593 aaKnown RBP50.8■■■■■ 5.72
SSBP4-206ENST00000599699 FANCD2Q9BXW9 1451 aa50.75■■■■■ 5.71
SSBP4-206ENST00000599699 CEP164Q9UPV0 1460 aa50.7■■■■■ 5.71
SSBP4-206ENST00000599699 MRC2Q9UBG0 1479 aa50.64■■■■■ 5.7
SSBP4-206ENST00000599699 PRDM2Q13029 1718 aa50.46■■■■■ 5.67
SSBP4-206ENST00000599699 WDR62O43379 1518 aa50.41■■■■■ 5.66
SSBP4-206ENST00000599699 URB2Q14146 1524 aaKnown RBP50.22■■■■■ 5.63
SSBP4-206ENST00000599699 TOPBP1Q92547 1522 aa49.9■■■■■ 5.58
SSBP4-206ENST00000599699 ABCC8Q09428 1581 aa49.88■■■■■ 5.58
SSBP4-206ENST00000599699 DNMBPQ6XZF7 1577 aa49.82■■■■■ 5.57
SSBP4-206ENST00000599699 IFT140Q96RY7 1462 aa49.63■■■■■ 5.53
SSBP4-206ENST00000599699 DNAJC5Q9H3Z4 198 aa49.58■■■■■ 5.53
SSBP4-206ENST00000599699 CUX1P39880 1505 aa49.48■■■■■ 5.51
SSBP4-206ENST00000599699 POLA1P09884 1462 aaPredicted RBP49.47■■■■■ 5.51
SSBP4-206ENST00000599699 ZNF608Q9ULD9 1512 aaPredicted RBP49.42■■■■■ 5.5
SSBP4-206ENST00000599699 FGD5Q6ZNL6 1462 aa49.35■■■■■ 5.49
SSBP4-206ENST00000599699 SOGA1O94964 1423 aa49.32■■■■■ 5.49
SSBP4-206ENST00000599699 TARBP1Q13395 1621 aaKnown RBP49.31■■■■■ 5.48
SSBP4-206ENST00000599699 RAD54L2Q9Y4B4 1467 aa49.3■■■■■ 5.48
SSBP4-206ENST00000599699 EIF4G3O43432 1585 aaKnown RBP49.18■■■■■ 5.46
SSBP4-206ENST00000599699 AQRO60306 1485 aaKnown RBP eCLIP49.16■■■■■ 5.463e-9■■■■■ 42.1
SSBP4-206ENST00000599699 WRNQ14191 1432 aaPredicted RBP eCLIP49.16■■■■■ 5.46
SSBP4-206ENST00000599699 TDRD9Q8NDG6 1382 aaKnown RBP49.08■■■■■ 5.45
SSBP4-206ENST00000599699 SYNJ1O43426 1573 aa48.99■■■■■ 5.43
SSBP4-206ENST00000599699 TOP2BQ02880 1626 aa48.99■■■■■ 5.43
SSBP4-206ENST00000599699 BIVM-ERCC5R4GMW8 1640 aa48.96■■■■■ 5.43
SSBP4-206ENST00000599699 OSCARQ8IYS5 282 aa48.92■■■■■ 5.42
SSBP4-206ENST00000599699 WDR97A6NE52 1622 aa48.89■■■■■ 5.42
SSBP4-206ENST00000599699 ABCA10Q8WWZ4 1543 aa48.83■■■■■ 5.41
SSBP4-206ENST00000599699 GRIN2BQ13224 1484 aa48.73■■■■■ 5.39
SSBP4-206ENST00000599699 GAPVD1Q14C86 1478 aa48.73■■■■■ 5.39
SSBP4-206ENST00000599699 FBLN2P98095 1184 aa48.72■■■■■ 5.39
SSBP4-206ENST00000599699 SNAPC4Q5SXM2 1469 aa48.69■■■■■ 5.39
SSBP4-206ENST00000599699 ABCA5Q8WWZ7 1642 aa48.61■■■■■ 5.37
SSBP4-206ENST00000599699 MAGI1Q96QZ7 1491 aaPredicted RBP48.58■■■■■ 5.37
SSBP4-206ENST00000599699 CHD1O14646 1710 aa48.56■■■■■ 5.36
SSBP4-206ENST00000599699 PBRM1Q86U86 1689 aa48.55■■■■■ 5.36
SSBP4-206ENST00000599699 CHMP7Q8WUX9 453 aaPredicted RBP48.52■■■■■ 5.36
SSBP4-206ENST00000599699 SYNJ2O15056 1496 aa48.42■■■■■ 5.34
SSBP4-206ENST00000599699 ERICH3Q5RHP9 1530 aa48.24■■■■■ 5.31
SSBP4-206ENST00000599699 ADAMTS12P58397 1594 aa48.18■■■■■ 5.3
SSBP4-206ENST00000599699 FHAD1B1AJZ9 1412 aa48.15■■■■■ 5.3
SSBP4-206ENST00000599699 KIF27Q86VH2 1401 aa48.15■■■■■ 5.3
SSBP4-206ENST00000599699 GRIN2AQ12879 1464 aa48.09■■■■■ 5.29
SSBP4-206ENST00000599699 RIMBP3CA6NJZ7 1639 aa48.04■■■■■ 5.28
SSBP4-206ENST00000599699 RIMBP3BA6NNM3 1639 aa48.04■■■■■ 5.28
SSBP4-206ENST00000599699 RIMBP3Q9UFD9 1639 aa48.04■■■■■ 5.28
SSBP4-206ENST00000599699 ARHGEF11O15085 1522 aa48.04■■■■■ 5.28
SSBP4-206ENST00000599699 TRIM41Q8WV44 630 aa48.04■■■■■ 5.28
SSBP4-206ENST00000599699 CLASP1Q7Z460 1538 aa48.03■■■■■ 5.28
SSBP4-206ENST00000599699 IGF1RP08069 1367 aa47.96■■■■■ 5.27
SSBP4-206ENST00000599699 NUP160Q12769 1436 aa47.85■■■■■ 5.25
SSBP4-206ENST00000599699 CEP170Q5SW79 1584 aa47.83■■■■■ 5.25
SSBP4-206ENST00000599699 CUL7Q14999 1698 aa47.77■■■■■ 5.24
SSBP4-206ENST00000599699 CYB5RLQ6IPT4 315 aa47.73■■■■■ 5.23
SSBP4-206ENST00000599699 CARMIL1Q5VZK9 1371 aa47.7■■■■■ 5.23
SSBP4-206ENST00000599699 RUSC2Q8N2Y8 1516 aa47.66■■■■■ 5.22
SSBP4-206ENST00000599699 ARAP1Q96P48 1450 aa47.65■■■■■ 5.22
SSBP4-206ENST00000599699 JPH4Q96JJ6 628 aa47.46■■■■■ 5.19
SSBP4-206ENST00000599699 SHROOM2Q13796 1616 aa47.45■■■■■ 5.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms