RNA–Protein interactions for RNA: ENST00000348495.10

SSBP4-202, Transcript of single stranded DNA binding protein 4, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SSBP4, Length 1,721 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-202ENST00000348495 NISCHQ9Y2I1 1504 aa63.54■■■■■ 7.76
SSBP4-202ENST00000348495 CCDC180Q9P1Z9 1646 aa55.9■■■■■ 6.54
SSBP4-202ENST00000348495 ABCC9O60706 1549 aa53.5■■■■■ 6.15
SSBP4-202ENST00000348495 ZCCHC6Q5VYS8 1495 aaKnown RBP53.21■■■■■ 6.11
SSBP4-202ENST00000348495 DCAF1Q9Y4B6 1507 aa52.63■■■■■ 6.02
SSBP4-202ENST00000348495 DCAF8L2P0C7V8 631 aa52.49■■■■■ 5.99
SSBP4-202ENST00000348495 MYO15BQ96JP2 1530 aa52.38■■■■■ 5.98
SSBP4-202ENST00000348495 NACADO15069 1562 aa52.26■■■■■ 5.96
SSBP4-202ENST00000348495 RB1CC1Q8TDY2 1594 aa51.99■■■■■ 5.91
SSBP4-202ENST00000348495 SCRIBQ14160 1630 aa51.12■■■■■ 5.77
SSBP4-202ENST00000348495 SHROOM4Q9ULL8 1493 aa50.95■■■■■ 5.75
SSBP4-202ENST00000348495 UNC13AQ9UPW8 1703 aa50.88■■■■■ 5.74
SSBP4-202ENST00000348495 BICRAQ9NZM4 1560 aa50.46■■■■■ 5.67
SSBP4-202ENST00000348495 PABPN1Q86U42 306 aaKnown RBP eCLIP50.22■■■■■ 5.632e-7■■■□□ 17.8
SSBP4-202ENST00000348495 CECR2Q9BXF3 1484 aa49.38■■■■■ 5.5
SSBP4-202ENST00000348495 BAZ1AQ9NRL2 1556 aaPredicted RBP49.13■■■■■ 5.46
SSBP4-202ENST00000348495 SMARCA4P51532 1647 aa49.03■■■■■ 5.44
SSBP4-202ENST00000348495 MROH2BQ7Z745 1585 aa49.01■■■■■ 5.44
SSBP4-202ENST00000348495 EIF4G1Q04637 1599 aaKnown RBP48.98■■■■■ 5.43
SSBP4-202ENST00000348495 RSF1Q96T23 1441 aaPredicted RBP48.91■■■■■ 5.42
SSBP4-202ENST00000348495 SUPT5HO00267 1087 aaKnown RBP48.55■■■■■ 5.36
SSBP4-202ENST00000348495 PEG3Q9GZU2 1588 aa48.55■■■■■ 5.36
SSBP4-202ENST00000348495 WIZO95785 1651 aa48.53■■■■■ 5.36
SSBP4-202ENST00000348495 CC2D2AQ9P2K1 1620 aa48.46■■■■■ 5.35
SSBP4-202ENST00000348495 ATAD2BQ9ULI0 1458 aa48.45■■■■■ 5.35
SSBP4-202ENST00000348495 SMARCA2P51531 1590 aa48.42■■■■■ 5.34
SSBP4-202ENST00000348495 NCAPD3P42695 1498 aa48.23■■■■■ 5.31
SSBP4-202ENST00000348495 HMGXB3Q12766 1538 aa48.1■■■■■ 5.29
SSBP4-202ENST00000348495 BAZ1BQ9UIG0 1483 aaKnown RBP48.08■■■■■ 5.29
SSBP4-202ENST00000348495 TOP2AP11388 1531 aaKnown RBP48.08■■■■■ 5.29
SSBP4-202ENST00000348495 DNAJC5BQ9UF47 199 aa48.01■■■■■ 5.28
SSBP4-202ENST00000348495 CCDC88BA6NC98 1476 aa47.52■■■■■ 5.2
SSBP4-202ENST00000348495 CFTRP13569 1480 aa46.9■■■■■ 5.1
SSBP4-202ENST00000348495 CADPSQ9ULU8 1353 aa46.88■■■■■ 5.1
SSBP4-202ENST00000348495 LAMC3Q9Y6N6 1575 aa46.72■■■■■ 5.07
SSBP4-202ENST00000348495 NESP48681 1621 aa46.7■■■■■ 5.07
SSBP4-202ENST00000348495 PRDM2Q13029 1718 aa46.6■■■■■ 5.05
SSBP4-202ENST00000348495 PDS5BQ9NTI5 1447 aa46.35■■■■■ 5.01
SSBP4-202ENST00000348495 FANCD2Q9BXW9 1451 aa46.33■■■■■ 5.01
SSBP4-202ENST00000348495 ABCC8Q09428 1581 aa46.17■■■■■ 4.98
SSBP4-202ENST00000348495 KIF21AQ7Z4S6 1674 aa46.16■■■■■ 4.98
SSBP4-202ENST00000348495 CEP164Q9UPV0 1460 aa46.14■■■■■ 4.98
SSBP4-202ENST00000348495 CHIC1Q5VXU3 224 aa46.11■■■■■ 4.97
SSBP4-202ENST00000348495 WRNQ14191 1432 aaPredicted RBP eCLIP46.04■■■■■ 4.96
SSBP4-202ENST00000348495 ERCC6Q03468 1493 aa45.96■■■■■ 4.95
SSBP4-202ENST00000348495 CUX1P39880 1505 aa45.9■■■■■ 4.94
SSBP4-202ENST00000348495 SYNJ1O43426 1573 aa45.9■■■■■ 4.94
SSBP4-202ENST00000348495 URB2Q14146 1524 aaKnown RBP45.83■■■■■ 4.93
SSBP4-202ENST00000348495 MRC2Q9UBG0 1479 aa45.82■■■■■ 4.93
SSBP4-202ENST00000348495 TOP2BQ02880 1626 aa45.82■■■■■ 4.93
SSBP4-202ENST00000348495 BIVM-ERCC5R4GMW8 1640 aa45.8■■■■■ 4.92
SSBP4-202ENST00000348495 DNMBPQ6XZF7 1577 aa45.8■■■■■ 4.92
SSBP4-202ENST00000348495 TRIM41Q8WV44 630 aa45.8■■■■■ 4.92
SSBP4-202ENST00000348495 TOPBP1Q92547 1522 aa45.75■■■■■ 4.91
SSBP4-202ENST00000348495 THOC2Q8NI27 1593 aaKnown RBP45.71■■■■■ 4.91
SSBP4-202ENST00000348495 WDR62O43379 1518 aa45.66■■■■■ 4.9
SSBP4-202ENST00000348495 FGD5Q6ZNL6 1462 aa45.52■■■■■ 4.88
SSBP4-202ENST00000348495 POLA1P09884 1462 aaPredicted RBP45.46■■■■■ 4.87
SSBP4-202ENST00000348495 CUX2O14529 1486 aa45.28■■■■■ 4.84
SSBP4-202ENST00000348495 SOGA1O94964 1423 aa45.26■■■■■ 4.84
SSBP4-202ENST00000348495 RAD54L2Q9Y4B4 1467 aa45.25■■■■■ 4.83
SSBP4-202ENST00000348495 TARBP1Q13395 1621 aaKnown RBP45.18■■■■■ 4.82
SSBP4-202ENST00000348495 ABCA10Q8WWZ4 1543 aa45.15■■■■■ 4.82
SSBP4-202ENST00000348495 IFT140Q96RY7 1462 aa45.13■■■■■ 4.81
SSBP4-202ENST00000348495 WDR97A6NE52 1622 aa45.11■■■■■ 4.81
SSBP4-202ENST00000348495 RUSC2Q8N2Y8 1516 aa45.01■■■■■ 4.8
SSBP4-202ENST00000348495 KIF27Q86VH2 1401 aa44.96■■■■■ 4.79
SSBP4-202ENST00000348495 EEA1Q15075 1411 aa44.94■■■■■ 4.78
SSBP4-202ENST00000348495 TDRD9Q8NDG6 1382 aaKnown RBP44.87■■■■■ 4.77
SSBP4-202ENST00000348495 ABCA5Q8WWZ7 1642 aa44.87■■■■■ 4.77
SSBP4-202ENST00000348495 ZNF608Q9ULD9 1512 aaPredicted RBP44.86■■■■■ 4.77
SSBP4-202ENST00000348495 FAM9AQ8IZU1 332 aaPredicted RBP44.82■■■■■ 4.77
SSBP4-202ENST00000348495 GAPVD1Q14C86 1478 aa44.77■■■■■ 4.76
SSBP4-202ENST00000348495 AQRO60306 1485 aaKnown RBP eCLIP44.76■■■■■ 4.763e-7■■■■■ 55.2
SSBP4-202ENST00000348495 EIF4G3O43432 1585 aaKnown RBP44.71■■■■■ 4.75
SSBP4-202ENST00000348495 CSRNP3Q8WYN3 585 aa44.7■■■■■ 4.75
SSBP4-202ENST00000348495 IGF1RP08069 1367 aa44.67■■■■■ 4.74
SSBP4-202ENST00000348495 ERICH3Q5RHP9 1530 aa44.62■■■■■ 4.73
SSBP4-202ENST00000348495 PBRM1Q86U86 1689 aa44.59■■■■■ 4.73
SSBP4-202ENST00000348495 GRIN2BQ13224 1484 aa44.58■■■■■ 4.73
SSBP4-202ENST00000348495 PRXQ9BXM0 1461 aa44.47■■■■■ 4.71
SSBP4-202ENST00000348495 CUL7Q14999 1698 aa44.44■■■■■ 4.7
SSBP4-202ENST00000348495 KIF21BO75037 1637 aa44.41■■■■■ 4.7
SSBP4-202ENST00000348495 CARMIL1Q5VZK9 1371 aa44.4■■■■■ 4.7
SSBP4-202ENST00000348495 SNAPC4Q5SXM2 1469 aa44.36■■■■■ 4.69
SSBP4-202ENST00000348495 MAGI1Q96QZ7 1491 aaPredicted RBP44.33■■■■■ 4.69
SSBP4-202ENST00000348495 ADAMTS12P58397 1594 aa44.33■■■■■ 4.69
SSBP4-202ENST00000348495 FHAD1B1AJZ9 1412 aa44.3■■■■■ 4.68
SSBP4-202ENST00000348495 RAPGEF2Q9Y4G8 1499 aa44.28■■■■■ 4.68
SSBP4-202ENST00000348495 GOLGA3Q08378 1498 aa44.23■■■■■ 4.67
SSBP4-202ENST00000348495 LOC105371045A0A1W2PR82 267 aa44.22■■■■■ 4.67
SSBP4-202ENST00000348495 SYNJ2O15056 1496 aa44.15■■■■■ 4.66
SSBP4-202ENST00000348495 EHMT2Q96KQ7 1210 aa44.13■■■■■ 4.65
SSBP4-202ENST00000348495 GRIN2AQ12879 1464 aa44.03■■■■■ 4.64
SSBP4-202ENST00000348495 CHMP7Q8WUX9 453 aaPredicted RBP43.99■■■■■ 4.63
SSBP4-202ENST00000348495 UBTFP17480 764 aaKnown RBP43.96■■■■■ 4.63
SSBP4-202ENST00000348495 TNIKQ9UKE5 1360 aa43.93■■■■■ 4.62
SSBP4-202ENST00000348495 CHD1O14646 1710 aa43.9■■■■■ 4.62
SSBP4-202ENST00000348495 FBLN2P98095 1184 aa43.9■■■■■ 4.62
SSBP4-202ENST00000348495 NUP160Q12769 1436 aa43.8■■■■■ 4.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms