RNA–Protein interactions for RNA: ENST00000448310.1

CBX4-202, Transcript of chromobox 4, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene CBX4, Length 718 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-202ENST00000448310 NISCHQ9Y2I1 1504 aa70.77■■■■■ 8.92
CBX4-202ENST00000448310 CCDC180Q9P1Z9 1646 aa63.45■■■■■ 7.75
CBX4-202ENST00000448310 ABCC9O60706 1549 aa63.35■■■■■ 7.73
CBX4-202ENST00000448310 RB1CC1Q8TDY2 1594 aa60.31■■■■■ 7.25
CBX4-202ENST00000448310 NACADO15069 1562 aa59.91■■■■■ 7.18
CBX4-202ENST00000448310 DCAF8L2P0C7V8 631 aa59.72■■■■■ 7.15
CBX4-202ENST00000448310 DNAJC5BQ9UF47 199 aa59.27■■■■■ 7.08
CBX4-202ENST00000448310 UNC13AQ9UPW8 1703 aa59.09■■■■■ 7.05
CBX4-202ENST00000448310 MYO15BQ96JP2 1530 aa59.08■■■■■ 7.05
CBX4-202ENST00000448310 PABPN1Q86U42 306 aaKnown RBP eCLIP59■■■■■ 7.04
CBX4-202ENST00000448310 ZCCHC6Q5VYS8 1495 aaKnown RBP58.69■■■■■ 6.99
CBX4-202ENST00000448310 BICRAQ9NZM4 1560 aa58.59■■■■■ 6.97
CBX4-202ENST00000448310 DCAF1Q9Y4B6 1507 aa58.41■■■■■ 6.94
CBX4-202ENST00000448310 SCRIBQ14160 1630 aa57.9■■■■■ 6.86
CBX4-202ENST00000448310 SHROOM4Q9ULL8 1493 aa57.68■■■■■ 6.82
CBX4-202ENST00000448310 CC2D2AQ9P2K1 1620 aa57.23■■■■■ 6.75
CBX4-202ENST00000448310 EIF4G1Q04637 1599 aaKnown RBP57.13■■■■■ 6.74
CBX4-202ENST00000448310 CECR2Q9BXF3 1484 aa57.01■■■■■ 6.72
CBX4-202ENST00000448310 NCAPD3P42695 1498 aa55.29■■■■■ 6.44
CBX4-202ENST00000448310 SMARCA4P51532 1647 aa55.21■■■■■ 6.43
CBX4-202ENST00000448310 ATAD2BQ9ULI0 1458 aa55.18■■■■■ 6.42
CBX4-202ENST00000448310 SMARCA2P51531 1590 aa55.02■■■■■ 6.4
CBX4-202ENST00000448310 HMGXB3Q12766 1538 aa54.92■■■■■ 6.38
CBX4-202ENST00000448310 BAZ1AQ9NRL2 1556 aaPredicted RBP54.92■■■■■ 6.38
CBX4-202ENST00000448310 BAZ1BQ9UIG0 1483 aaKnown RBP54.67■■■■■ 6.34
CBX4-202ENST00000448310 ERCC6Q03468 1493 aa54.65■■■■■ 6.34
CBX4-202ENST00000448310 PEG3Q9GZU2 1588 aa54.62■■■■■ 6.33
CBX4-202ENST00000448310 MROH2BQ7Z745 1585 aa54.58■■■■■ 6.33
CBX4-202ENST00000448310 NESP48681 1621 aa54.48■■■■■ 6.31
CBX4-202ENST00000448310 CUX2O14529 1486 aa54.44■■■■■ 6.31
CBX4-202ENST00000448310 DNAJC5Q9H3Z4 198 aa54.23■■■■■ 6.27
CBX4-202ENST00000448310 LAMC3Q9Y6N6 1575 aa54.05■■■■■ 6.24
CBX4-202ENST00000448310 WIZO95785 1651 aa53.98■■■■■ 6.23
CBX4-202ENST00000448310 THOC2Q8NI27 1593 aaKnown RBP53.88■■■■■ 6.22
CBX4-202ENST00000448310 KIF21AQ7Z4S6 1674 aa53.82■■■■■ 6.21
CBX4-202ENST00000448310 PDS5BQ9NTI5 1447 aa53.7■■■■■ 6.19
CBX4-202ENST00000448310 CADPSQ9ULU8 1353 aa53.62■■■■■ 6.17
CBX4-202ENST00000448310 RSF1Q96T23 1441 aaPredicted RBP53.46■■■■■ 6.15
CBX4-202ENST00000448310 MRC2Q9UBG0 1479 aa53.27■■■■■ 6.12
CBX4-202ENST00000448310 TOP2AP11388 1531 aaKnown RBP53.24■■■■■ 6.11
CBX4-202ENST00000448310 WDR62O43379 1518 aa53.15■■■■■ 6.1
CBX4-202ENST00000448310 CEP164Q9UPV0 1460 aa53.1■■■■■ 6.09
CBX4-202ENST00000448310 CFTRP13569 1480 aa53.06■■■■■ 6.08
CBX4-202ENST00000448310 FANCD2Q9BXW9 1451 aa53.06■■■■■ 6.08
CBX4-202ENST00000448310 PRDM2Q13029 1718 aa52.65■■■■■ 6.02
CBX4-202ENST00000448310 CCDC88BA6NC98 1476 aa52.64■■■■■ 6.02
CBX4-202ENST00000448310 URB2Q14146 1524 aaKnown RBP52.64■■■■■ 6.02
CBX4-202ENST00000448310 TOPBP1Q92547 1522 aa52.09■■■■■ 5.93
CBX4-202ENST00000448310 IFT140Q96RY7 1462 aa52.01■■■■■ 5.92
CBX4-202ENST00000448310 TRIM41Q8WV44 630 aa52.01■■■■■ 5.92
CBX4-202ENST00000448310 OSCARQ8IYS5 282 aa51.98■■■■■ 5.91
CBX4-202ENST00000448310 ZNF608Q9ULD9 1512 aaPredicted RBP51.98■■■■■ 5.91
CBX4-202ENST00000448310 DNMBPQ6XZF7 1577 aa51.91■■■■■ 5.9
CBX4-202ENST00000448310 ABCC8Q09428 1581 aa51.9■■■■■ 5.9
CBX4-202ENST00000448310 EIF4G3O43432 1585 aaKnown RBP51.71■■■■■ 5.87
CBX4-202ENST00000448310 TARBP1Q13395 1621 aaKnown RBP51.63■■■■■ 5.86
CBX4-202ENST00000448310 POLA1P09884 1462 aaPredicted RBP51.56■■■■■ 5.84
CBX4-202ENST00000448310 AQRO60306 1485 aaKnown RBP eCLIP51.51■■■■■ 5.845e-8■■■■■ 28.1
CBX4-202ENST00000448310 RAD54L2Q9Y4B4 1467 aa51.41■■■■■ 5.82
CBX4-202ENST00000448310 RIMBP3CA6NJZ7 1639 aa51.38■■■■■ 5.82
CBX4-202ENST00000448310 RIMBP3BA6NNM3 1639 aa51.38■■■■■ 5.82
CBX4-202ENST00000448310 RIMBP3Q9UFD9 1639 aa51.38■■■■■ 5.82
CBX4-202ENST00000448310 CHD1O14646 1710 aa51.35■■■■■ 5.81
CBX4-202ENST00000448310 SOGA1O94964 1423 aa51.31■■■■■ 5.8
CBX4-202ENST00000448310 FGD5Q6ZNL6 1462 aa51.28■■■■■ 5.8
CBX4-202ENST00000448310 SUPT5HO00267 1087 aaKnown RBP51.27■■■■■ 5.8
CBX4-202ENST00000448310 CUX1P39880 1505 aa51.27■■■■■ 5.8
CBX4-202ENST00000448310 TDRD9Q8NDG6 1382 aaKnown RBP51.21■■■■■ 5.79
CBX4-202ENST00000448310 ARHGEF11O15085 1522 aa51.21■■■■■ 5.79
CBX4-202ENST00000448310 FBLN2P98095 1184 aa51.14■■■■■ 5.78
CBX4-202ENST00000448310 WDR97A6NE52 1622 aa51.03■■■■■ 5.76
CBX4-202ENST00000448310 SNAPC4Q5SXM2 1469 aa50.99■■■■■ 5.75
CBX4-202ENST00000448310 GRIN2BQ13224 1484 aa50.84■■■■■ 5.73
CBX4-202ENST00000448310 CYB5RLQ6IPT4 315 aa50.81■■■■■ 5.72
CBX4-202ENST00000448310 MAGI1Q96QZ7 1491 aaPredicted RBP50.81■■■■■ 5.72
CBX4-202ENST00000448310 PBRM1Q86U86 1689 aa50.76■■■■■ 5.72
CBX4-202ENST00000448310 CHMP7Q8WUX9 453 aaPredicted RBP50.75■■■■■ 5.71
CBX4-202ENST00000448310 ARAP1Q96P48 1450 aa50.72■■■■■ 5.71
CBX4-202ENST00000448310 GAPVD1Q14C86 1478 aa50.7■■■■■ 5.71
CBX4-202ENST00000448310 CLASP1Q7Z460 1538 aa50.68■■■■■ 5.7
CBX4-202ENST00000448310 ABCA10Q8WWZ4 1543 aa50.67■■■■■ 5.7
CBX4-202ENST00000448310 SYNJ2O15056 1496 aa50.65■■■■■ 5.7
CBX4-202ENST00000448310 SYNJ1O43426 1573 aa50.65■■■■■ 5.7
CBX4-202ENST00000448310 ABCA5Q8WWZ7 1642 aa50.62■■■■■ 5.69
CBX4-202ENST00000448310 BIVM-ERCC5R4GMW8 1640 aa50.5■■■■■ 5.67
CBX4-202ENST00000448310 WRNQ14191 1432 aaPredicted RBP eCLIP50.47■■■■■ 5.67
CBX4-202ENST00000448310 TOP2BQ02880 1626 aa50.47■■■■■ 5.67
CBX4-202ENST00000448310 ADAMTS12P58397 1594 aa50.24■■■■■ 5.63
CBX4-202ENST00000448310 GRIN2AQ12879 1464 aa50.2■■■■■ 5.63
CBX4-202ENST00000448310 TRHP20396 242 aaPredicted RBP50.2■■■■■ 5.63
CBX4-202ENST00000448310 CEP170Q5SW79 1584 aa50.07■■■■■ 5.61
CBX4-202ENST00000448310 FHAD1B1AJZ9 1412 aa50.03■■■■■ 5.6
CBX4-202ENST00000448310 ERICH3Q5RHP9 1530 aa50.02■■■■■ 5.6
CBX4-202ENST00000448310 NUP160Q12769 1436 aa50.01■■■■■ 5.6
CBX4-202ENST00000448310 ERCC6L2Q5T890 1561 aa49.97■■■■■ 5.59
CBX4-202ENST00000448310 SHROOM2Q13796 1616 aa49.81■■■■■ 5.56
CBX4-202ENST00000448310 PRG4Q92954 1404 aaPredicted RBP49.53■■■■■ 5.52
CBX4-202ENST00000448310 RUSC2Q8N2Y8 1516 aa49.53■■■■■ 5.52
CBX4-202ENST00000448310 JPH4Q96JJ6 628 aa49.49■■■■■ 5.51
CBX4-202ENST00000448310 KIF27Q86VH2 1401 aa49.45■■■■■ 5.51
Retrieved 100 of 20,778 RNA–protein pairs in 177.5 ms