RNA–Protein interactions for RNA: ENST00000479901.5

AGAP3-216, Transcript of ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, humanhuman

TSL 5 BASIC

Gene AGAP3, Length 1,881 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AGAP3-216ENST00000479901 NISCHQ9Y2I1 1504 aa57.44■■■■■ 6.79
AGAP3-216ENST00000479901 CCDC180Q9P1Z9 1646 aa50.78■■■■■ 5.72
AGAP3-216ENST00000479901 ABCC9O60706 1549 aa49.69■■■■■ 5.54
AGAP3-216ENST00000479901 ZCCHC6Q5VYS8 1495 aaKnown RBP48.45■■■■■ 5.35
AGAP3-216ENST00000479901 DCAF8L2P0C7V8 631 aa48.06■■■■■ 5.28
AGAP3-216ENST00000479901 NACADO15069 1562 aa47.71■■■■■ 5.23
AGAP3-216ENST00000479901 RB1CC1Q8TDY2 1594 aa47.71■■■■■ 5.23
AGAP3-216ENST00000479901 SHROOM4Q9ULL8 1493 aa47.64■■■■■ 5.22
AGAP3-216ENST00000479901 MYO15BQ96JP2 1530 aa47.46■■■■■ 5.19
AGAP3-216ENST00000479901 DCAF1Q9Y4B6 1507 aa47.45■■■■■ 5.19
AGAP3-216ENST00000479901 UNC13AQ9UPW8 1703 aa46.76■■■■■ 5.08
AGAP3-216ENST00000479901 PABPN1Q86U42 306 aaKnown RBP eCLIP46.57■■■■■ 5.05
AGAP3-216ENST00000479901 SCRIBQ14160 1630 aa46.57■■■■■ 5.05
AGAP3-216ENST00000479901 SUPT5HO00267 1087 aaKnown RBP46.42■■■■■ 5.02
AGAP3-216ENST00000479901 BICRAQ9NZM4 1560 aa46.42■■■■■ 5.02
AGAP3-216ENST00000479901 DNAJC5BQ9UF47 199 aa45.52■■■■■ 4.88
AGAP3-216ENST00000479901 EIF4G1Q04637 1599 aaKnown RBP45.12■■■■■ 4.81
AGAP3-216ENST00000479901 CHIC1Q5VXU3 224 aa45.11■■■■■ 4.81
AGAP3-216ENST00000479901 RSF1Q96T23 1441 aaPredicted RBP44.98■■■■■ 4.79
AGAP3-216ENST00000479901 CC2D2AQ9P2K1 1620 aa44.89■■■■■ 4.78
AGAP3-216ENST00000479901 CECR2Q9BXF3 1484 aa44.86■■■■■ 4.77
AGAP3-216ENST00000479901 SMARCA4P51532 1647 aa44.5■■■■■ 4.71
AGAP3-216ENST00000479901 BAZ1AQ9NRL2 1556 aaPredicted RBP44.42■■■■■ 4.7
AGAP3-216ENST00000479901 MROH2BQ7Z745 1585 aa44.38■■■■■ 4.7
AGAP3-216ENST00000479901 ATAD2BQ9ULI0 1458 aa44.21■■■■■ 4.67
AGAP3-216ENST00000479901 WIZO95785 1651 aa44.1■■■■■ 4.65
AGAP3-216ENST00000479901 NCAPD3P42695 1498 aa44.1■■■■■ 4.65
AGAP3-216ENST00000479901 SMARCA2P51531 1590 aa44.05■■■■■ 4.64
AGAP3-216ENST00000479901 PEG3Q9GZU2 1588 aa43.99■■■■■ 4.63
AGAP3-216ENST00000479901 HMGXB3Q12766 1538 aa43.84■■■■■ 4.61
AGAP3-216ENST00000479901 BAZ1BQ9UIG0 1483 aaKnown RBP43.83■■■■■ 4.61
AGAP3-216ENST00000479901 TOP2AP11388 1531 aaKnown RBP43.66■■■■■ 4.58
AGAP3-216ENST00000479901 TRIM41Q8WV44 630 aa43.57■■■■■ 4.56
AGAP3-216ENST00000479901 LOC105371045A0A1W2PR82 267 aa43.42■■■■■ 4.54
AGAP3-216ENST00000479901 CCDC88BA6NC98 1476 aa43.24■■■■■ 4.51
AGAP3-216ENST00000479901 NESP48681 1621 aa43.13■■■■■ 4.5
AGAP3-216ENST00000479901 CADPSQ9ULU8 1353 aa42.86■■■■■ 4.45
AGAP3-216ENST00000479901 LAMC3Q9Y6N6 1575 aa42.83■■■■■ 4.45
AGAP3-216ENST00000479901 FAM9AQ8IZU1 332 aaPredicted RBP42.8■■■■■ 4.44
AGAP3-216ENST00000479901 ABCC8Q09428 1581 aa42.71■■■■■ 4.43
AGAP3-216ENST00000479901 ERCC6Q03468 1493 aa42.69■■■■■ 4.42
AGAP3-216ENST00000479901 PCGF6Q9BYE7 350 aa42.68■■■■■ 4.42
AGAP3-216ENST00000479901 CFTRP13569 1480 aa42.66■■■■■ 4.42
AGAP3-216ENST00000479901 PDS5BQ9NTI5 1447 aa42.55■■■■■ 4.4
AGAP3-216ENST00000479901 KIF21AQ7Z4S6 1674 aa42.52■■■■■ 4.4
AGAP3-216ENST00000479901 HRCP23327 699 aa42.48■■■■■ 4.39
AGAP3-216ENST00000479901 TRIM26Q12899 539 aaPredicted RBP42.42■■■■■ 4.38
AGAP3-216ENST00000479901 FANCD2Q9BXW9 1451 aa42.37■■■■■ 4.37
AGAP3-216ENST00000479901 EEA1Q15075 1411 aa42.34■■■■■ 4.37
AGAP3-216ENST00000479901 WRNQ14191 1432 aaPredicted RBP eCLIP42.29■■■■■ 4.363e-6■■■■□ 25.8
AGAP3-216ENST00000479901 THOC2Q8NI27 1593 aaKnown RBP42.27■■■■■ 4.36
AGAP3-216ENST00000479901 CEP164Q9UPV0 1460 aa42.25■■■■■ 4.35
AGAP3-216ENST00000479901 PRDM2Q13029 1718 aa42.23■■■■■ 4.35
AGAP3-216ENST00000479901 SOGA1O94964 1423 aa42.16■■■■■ 4.34
AGAP3-216ENST00000479901 EHMT2Q96KQ7 1210 aa42.13■■■■■ 4.34
AGAP3-216ENST00000479901 MRC2Q9UBG0 1479 aa42.13■■■■■ 4.33
AGAP3-216ENST00000479901 SYNJ1O43426 1573 aa42.08■■■■■ 4.33
AGAP3-216ENST00000479901 CUX2O14529 1486 aa42.05■■■■■ 4.32
AGAP3-216ENST00000479901 URB2Q14146 1524 aaKnown RBP41.99■■■■■ 4.31
AGAP3-216ENST00000479901 WDR62O43379 1518 aa41.98■■■■■ 4.31
AGAP3-216ENST00000479901 CSRNP3Q8WYN3 585 aa41.98■■■■■ 4.31
AGAP3-216ENST00000479901 RUSC2Q8N2Y8 1516 aa41.93■■■■■ 4.3
AGAP3-216ENST00000479901 TNIKQ9UKE5 1360 aa41.92■■■■■ 4.3
AGAP3-216ENST00000479901 TOP2BQ02880 1626 aa41.82■■■■■ 4.29
AGAP3-216ENST00000479901 GOLGA3Q08378 1498 aa41.8■■■■■ 4.28
AGAP3-216ENST00000479901 BIVM-ERCC5R4GMW8 1640 aa41.77■■■■■ 4.28
AGAP3-216ENST00000479901 CEP162Q5TB80 1403 aa41.76■■■■■ 4.27
AGAP3-216ENST00000479901 TOPBP1Q92547 1522 aa41.74■■■■■ 4.27
AGAP3-216ENST00000479901 KIF21BO75037 1637 aa41.73■■■■■ 4.27
AGAP3-216ENST00000479901 DNMBPQ6XZF7 1577 aa41.65■■■■■ 4.26
AGAP3-216ENST00000479901 CUX1P39880 1505 aa41.57■■■■■ 4.25
AGAP3-216ENST00000479901 UBTFP17480 764 aaKnown RBP41.53■■■■■ 4.24
AGAP3-216ENST00000479901 POLA1P09884 1462 aaPredicted RBP41.42■■■■■ 4.22
AGAP3-216ENST00000479901 ZEB1P37275 1124 aaPredicted RBP41.37■■■■■ 4.21
AGAP3-216ENST00000479901 FGD5Q6ZNL6 1462 aa41.36■■■■■ 4.21
AGAP3-216ENST00000479901 IFT140Q96RY7 1462 aa41.33■■■■■ 4.21
AGAP3-216ENST00000479901 RAD54L2Q9Y4B4 1467 aa41.33■■■■■ 4.21
AGAP3-216ENST00000479901 ZNF608Q9ULD9 1512 aaPredicted RBP41.3■■■■■ 4.2
AGAP3-216ENST00000479901 PPARGC1BQ86YN6 1023 aaKnown RBP41.27■■■■■ 4.2
AGAP3-216ENST00000479901 TARBP1Q13395 1621 aaKnown RBP41.26■■■■■ 4.2
AGAP3-216ENST00000479901 RAPGEF2Q9Y4G8 1499 aa41.25■■■■■ 4.19
AGAP3-216ENST00000479901 ERICH3Q5RHP9 1530 aa41.23■■■■■ 4.19
AGAP3-216ENST00000479901 CLIP1P30622 1438 aa41.17■■■■■ 4.18
AGAP3-216ENST00000479901 PRXQ9BXM0 1461 aa41.16■■■■■ 4.18
AGAP3-216ENST00000479901 KIF27Q86VH2 1401 aa41.12■■■■■ 4.17
AGAP3-216ENST00000479901 AQRO60306 1485 aaKnown RBP eCLIP41.1■■■■■ 4.174e-7■■■■■ 26.9
AGAP3-216ENST00000479901 TDRD9Q8NDG6 1382 aaKnown RBP41.07■■■■■ 4.17
AGAP3-216ENST00000479901 EIF4G3O43432 1585 aaKnown RBP41.04■■■■■ 4.16
AGAP3-216ENST00000479901 VPS8Q8N3P4 1428 aa40.98■■■■■ 4.15
AGAP3-216ENST00000479901 WDR97A6NE52 1622 aa40.94■■■■■ 4.14
AGAP3-216ENST00000479901 ABCA10Q8WWZ4 1543 aa40.91■■■■■ 4.14
AGAP3-216ENST00000479901 GAPVD1Q14C86 1478 aa40.75■■■■■ 4.11
AGAP3-216ENST00000479901 ABCA5Q8WWZ7 1642 aa40.74■■■■■ 4.11
AGAP3-216ENST00000479901 GRIN2BQ13224 1484 aa40.66■■■■■ 4.1
AGAP3-216ENST00000479901 TTBK1Q5TCY1 1321 aaPredicted RBP40.66■■■■■ 4.1
AGAP3-216ENST00000479901 SNAPC4Q5SXM2 1469 aa40.65■■■■■ 4.1
AGAP3-216ENST00000479901 IGF1RP08069 1367 aa40.65■■■■■ 4.1
AGAP3-216ENST00000479901 ARAP1Q96P48 1450 aa40.63■■■■■ 4.09
AGAP3-216ENST00000479901 PBRM1Q86U86 1689 aa40.62■■■■■ 4.09
AGAP3-216ENST00000479901 APLP2Q06481 763 aa40.58■■■■■ 4.09
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms