Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC21.68■■□□□ 1.06
LSM4Q9Y4Z0 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LSM4Q9Y4Z0 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LSM4Q9Y4Z0 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC21.66■■□□□ 1.06
LSM4Q9Y4Z0 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
LSM4Q9Y4Z0 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LSM4Q9Y4Z0 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC21.65■■□□□ 1.06
LSM4Q9Y4Z0 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
LSM4Q9Y4Z0 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LSM4Q9Y4Z0 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
LSM4Q9Y4Z0 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
LSM4Q9Y4Z0 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
LSM4Q9Y4Z0 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC21.63■■□□□ 1.05
LSM4Q9Y4Z0 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LSM4Q9Y4Z0 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC21.62■■□□□ 1.05
LSM4Q9Y4Z0 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LSM4Q9Y4Z0 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LSM4Q9Y4Z0 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC21.62■■□□□ 1.05
LSM4Q9Y4Z0 ABCB10P3-201ENST00000561950 2166 ntBASIC21.61■■□□□ 1.05
LSM4Q9Y4Z0 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC21.61■■□□□ 1.05
LSM4Q9Y4Z0 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LSM4Q9Y4Z0 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LSM4Q9Y4Z0 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC21.6■■□□□ 1.05
LSM4Q9Y4Z0 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC21.6■■□□□ 1.05
LSM4Q9Y4Z0 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
LSM4Q9Y4Z0 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
LSM4Q9Y4Z0 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC21.59■■□□□ 1.05
LSM4Q9Y4Z0 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC21.59■■□□□ 1.05
LSM4Q9Y4Z0 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
LSM4Q9Y4Z0 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC21.58■■□□□ 1.05
LSM4Q9Y4Z0 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
LSM4Q9Y4Z0 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
LSM4Q9Y4Z0 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
LSM4Q9Y4Z0 RARRES2P7-201ENST00000567349 469 ntBASIC21.56■■□□□ 1.04
LSM4Q9Y4Z0 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LSM4Q9Y4Z0 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
LSM4Q9Y4Z0 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC21.55■■□□□ 1.04
LSM4Q9Y4Z0 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
LSM4Q9Y4Z0 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LSM4Q9Y4Z0 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
LSM4Q9Y4Z0 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
LSM4Q9Y4Z0 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC21.51■■□□□ 1.03
LSM4Q9Y4Z0 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LSM4Q9Y4Z0 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
LSM4Q9Y4Z0 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
LSM4Q9Y4Z0 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LSM4Q9Y4Z0 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC21.48■■□□□ 1.03
LSM4Q9Y4Z0 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LSM4Q9Y4Z0 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LSM4Q9Y4Z0 EBPL-203ENST00000378270 579 ntTSL 2 BASIC21.47■■□□□ 1.03
LSM4Q9Y4Z0 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LSM4Q9Y4Z0 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
LSM4Q9Y4Z0 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LSM4Q9Y4Z0 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
LSM4Q9Y4Z0 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
LSM4Q9Y4Z0 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
LSM4Q9Y4Z0 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
LSM4Q9Y4Z0 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
LSM4Q9Y4Z0 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC21.43■■□□□ 1.02
LSM4Q9Y4Z0 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC21.43■■□□□ 1.02
LSM4Q9Y4Z0 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
LSM4Q9Y4Z0 SHF-206ENST00000560471 2499 ntTSL 5 BASIC21.43■■□□□ 1.02
LSM4Q9Y4Z0 MVK-208ENST00000539696 608 ntTSL 5 BASIC21.42■■□□□ 1.02
LSM4Q9Y4Z0 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC21.42■■□□□ 1.02
LSM4Q9Y4Z0 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
LSM4Q9Y4Z0 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
LSM4Q9Y4Z0 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC21.41■■□□□ 1.02
LSM4Q9Y4Z0 AC097358.2-201ENST00000607541 1159 ntBASIC21.41■■□□□ 1.02
LSM4Q9Y4Z0 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LSM4Q9Y4Z0 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
LSM4Q9Y4Z0 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC21.38■■□□□ 1.01
LSM4Q9Y4Z0 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LSM4Q9Y4Z0 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
LSM4Q9Y4Z0 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
LSM4Q9Y4Z0 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LSM4Q9Y4Z0 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LSM4Q9Y4Z0 SETD8P1-201ENST00000623146 1180 ntBASIC21.35■■□□□ 1.01
LSM4Q9Y4Z0 AC139426.1-201ENST00000568218 2529 ntBASIC21.35■■□□□ 1.01
LSM4Q9Y4Z0 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC21.35■■□□□ 1.01
LSM4Q9Y4Z0 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
LSM4Q9Y4Z0 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LSM4Q9Y4Z0 AC136428.2-201ENST00000563187 214 ntBASIC21.34■■□□□ 1.01
LSM4Q9Y4Z0 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LSM4Q9Y4Z0 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
LSM4Q9Y4Z0 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
LSM4Q9Y4Z0 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC21.32■■□□□ 1
LSM4Q9Y4Z0 KLF16-203ENST00000592313 508 ntTSL 3 BASIC21.32■■□□□ 1
LSM4Q9Y4Z0 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LSM4Q9Y4Z0 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC21.31■■□□□ 1
LSM4Q9Y4Z0 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
LSM4Q9Y4Z0 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
LSM4Q9Y4Z0 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
LSM4Q9Y4Z0 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
LSM4Q9Y4Z0 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LSM4Q9Y4Z0 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC21.29■■□□□ 1
LSM4Q9Y4Z0 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC21.28■■□□□ 1
LSM4Q9Y4Z0 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
LSM4Q9Y4Z0 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
LSM4Q9Y4Z0 ST7-AS1-201ENST00000456775 1889 ntBASIC21.28■■□□□ 1
LSM4Q9Y4Z0 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms