Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
LSM4Q9Y4Z0 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC26.34■■□□□ 1.81
LSM4Q9Y4Z0 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
LSM4Q9Y4Z0 HES6-203ENST00000409160 1600 ntTSL 2 BASIC25.94■■□□□ 1.74
LSM4Q9Y4Z0 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC25.86■■□□□ 1.73
LSM4Q9Y4Z0 AL356512.1-201ENST00000607453 1739 ntBASIC25.74■■□□□ 1.71
LSM4Q9Y4Z0 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC25.66■■□□□ 1.7
LSM4Q9Y4Z0 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
LSM4Q9Y4Z0 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
LSM4Q9Y4Z0 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC25.4■■□□□ 1.66
LSM4Q9Y4Z0 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC25.33■■□□□ 1.64
LSM4Q9Y4Z0 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
LSM4Q9Y4Z0 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC25.29■■□□□ 1.64
LSM4Q9Y4Z0 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC25.27■■□□□ 1.64
LSM4Q9Y4Z0 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC25.09■■□□□ 1.61
LSM4Q9Y4Z0 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
LSM4Q9Y4Z0 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC25.04■■□□□ 1.6
LSM4Q9Y4Z0 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
LSM4Q9Y4Z0 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
LSM4Q9Y4Z0 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC24.98■■□□□ 1.59
LSM4Q9Y4Z0 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC24.94■■□□□ 1.58
LSM4Q9Y4Z0 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
LSM4Q9Y4Z0 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
LSM4Q9Y4Z0 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC24.78■■□□□ 1.56
LSM4Q9Y4Z0 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC24.73■■□□□ 1.55
LSM4Q9Y4Z0 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
LSM4Q9Y4Z0 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
LSM4Q9Y4Z0 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
LSM4Q9Y4Z0 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
LSM4Q9Y4Z0 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC24.39■■□□□ 1.5
LSM4Q9Y4Z0 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC24.33■■□□□ 1.49
LSM4Q9Y4Z0 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC24.26■■□□□ 1.47
LSM4Q9Y4Z0 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC24.2■■□□□ 1.46
LSM4Q9Y4Z0 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC24.2■■□□□ 1.46
LSM4Q9Y4Z0 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
LSM4Q9Y4Z0 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC24.09■■□□□ 1.45
LSM4Q9Y4Z0 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC24.08■■□□□ 1.45
LSM4Q9Y4Z0 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
LSM4Q9Y4Z0 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC24.07■■□□□ 1.44
LSM4Q9Y4Z0 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC24.07■■□□□ 1.44
LSM4Q9Y4Z0 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC24.07■■□□□ 1.44
LSM4Q9Y4Z0 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC24■■□□□ 1.43
LSM4Q9Y4Z0 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC23.99■■□□□ 1.43
LSM4Q9Y4Z0 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
LSM4Q9Y4Z0 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
LSM4Q9Y4Z0 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
LSM4Q9Y4Z0 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
LSM4Q9Y4Z0 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
LSM4Q9Y4Z0 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
LSM4Q9Y4Z0 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
LSM4Q9Y4Z0 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
LSM4Q9Y4Z0 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
LSM4Q9Y4Z0 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
LSM4Q9Y4Z0 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
LSM4Q9Y4Z0 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
LSM4Q9Y4Z0 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
LSM4Q9Y4Z0 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC23.62■■□□□ 1.37
LSM4Q9Y4Z0 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
LSM4Q9Y4Z0 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
LSM4Q9Y4Z0 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
LSM4Q9Y4Z0 ILK-212ENST00000532063 1617 ntTSL 2 BASIC23.55■■□□□ 1.36
LSM4Q9Y4Z0 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
LSM4Q9Y4Z0 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
LSM4Q9Y4Z0 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
LSM4Q9Y4Z0 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC23.49■■□□□ 1.35
LSM4Q9Y4Z0 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
LSM4Q9Y4Z0 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
LSM4Q9Y4Z0 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC23.43■■□□□ 1.34
LSM4Q9Y4Z0 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
LSM4Q9Y4Z0 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC23.43■■□□□ 1.34
LSM4Q9Y4Z0 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
LSM4Q9Y4Z0 INO80B-203ENST00000409917 796 ntTSL 2 BASIC23.35■■□□□ 1.33
LSM4Q9Y4Z0 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
LSM4Q9Y4Z0 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC23.33■■□□□ 1.33
LSM4Q9Y4Z0 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
LSM4Q9Y4Z0 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
LSM4Q9Y4Z0 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
LSM4Q9Y4Z0 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
LSM4Q9Y4Z0 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
LSM4Q9Y4Z0 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
LSM4Q9Y4Z0 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
LSM4Q9Y4Z0 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC23.19■■□□□ 1.3
LSM4Q9Y4Z0 AC006077.2-201ENST00000623591 457 ntBASIC23.14■■□□□ 1.29
LSM4Q9Y4Z0 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
LSM4Q9Y4Z0 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
LSM4Q9Y4Z0 ZNRF2P1-201ENST00000441407 443 ntBASIC23.12■■□□□ 1.29
LSM4Q9Y4Z0 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC23.12■■□□□ 1.29
LSM4Q9Y4Z0 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
LSM4Q9Y4Z0 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC23.11■■□□□ 1.29
LSM4Q9Y4Z0 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
LSM4Q9Y4Z0 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
LSM4Q9Y4Z0 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC23.07■■□□□ 1.28
LSM4Q9Y4Z0 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC23.07■■□□□ 1.28
LSM4Q9Y4Z0 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
LSM4Q9Y4Z0 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC23.06■■□□□ 1.28
LSM4Q9Y4Z0 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
LSM4Q9Y4Z0 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
LSM4Q9Y4Z0 AC015813.7-201ENST00000623294 581 ntBASIC23.02■■□□□ 1.28
LSM4Q9Y4Z0 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
LSM4Q9Y4Z0 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 479.9 ms