RNA–Protein interactions for RNA: ENST00000397442.5

CPNE1-203, Transcript of copine 1, humanhuman

TSL 5 BASIC

Gene CPNE1, Length 1,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-203ENST00000397442 NISCHQ9Y2I1 1504 aa63.84■■■■■ 7.81
CPNE1-203ENST00000397442 CCDC180Q9P1Z9 1646 aa55.97■■■■■ 6.55
CPNE1-203ENST00000397442 ZCCHC6Q5VYS8 1495 aaKnown RBP53.53■■■■■ 6.16
CPNE1-203ENST00000397442 ABCC9O60706 1549 aa53.36■■■■■ 6.13
CPNE1-203ENST00000397442 DCAF1Q9Y4B6 1507 aa52.83■■■■■ 6.05
CPNE1-203ENST00000397442 DCAF8L2P0C7V8 631 aa52.72■■■■■ 6.03
CPNE1-203ENST00000397442 MYO15BQ96JP2 1530 aa52.43■■■■■ 5.98
CPNE1-203ENST00000397442 NACADO15069 1562 aa52.24■■■■■ 5.95
CPNE1-203ENST00000397442 RB1CC1Q8TDY2 1594 aa51.91■■■■■ 5.9
CPNE1-203ENST00000397442 SHROOM4Q9ULL8 1493 aa51.53■■■■■ 5.84
CPNE1-203ENST00000397442 SCRIBQ14160 1630 aa51.32■■■■■ 5.81
CPNE1-203ENST00000397442 UNC13AQ9UPW8 1703 aa50.91■■■■■ 5.74
CPNE1-203ENST00000397442 BICRAQ9NZM4 1560 aa50.42■■■■■ 5.66
CPNE1-203ENST00000397442 PABPN1Q86U42 306 aaKnown RBP eCLIP50.18■■■■■ 5.621e-6■■□□□ 11.6
CPNE1-203ENST00000397442 CECR2Q9BXF3 1484 aa49.64■■■■■ 5.54
CPNE1-203ENST00000397442 BAZ1AQ9NRL2 1556 aaPredicted RBP49.33■■■■■ 5.49
CPNE1-203ENST00000397442 MROH2BQ7Z745 1585 aa49.3■■■■■ 5.48
CPNE1-203ENST00000397442 RSF1Q96T23 1441 aaPredicted RBP49.29■■■■■ 5.48
CPNE1-203ENST00000397442 SUPT5HO00267 1087 aaKnown RBP49.26■■■■■ 5.48
CPNE1-203ENST00000397442 SMARCA4P51532 1647 aa49.2■■■■■ 5.47
CPNE1-203ENST00000397442 EIF4G1Q04637 1599 aaKnown RBP48.91■■■■■ 5.42
CPNE1-203ENST00000397442 WIZO95785 1651 aa48.85■■■■■ 5.41
CPNE1-203ENST00000397442 PEG3Q9GZU2 1588 aa48.67■■■■■ 5.38
CPNE1-203ENST00000397442 ATAD2BQ9ULI0 1458 aa48.53■■■■■ 5.36
CPNE1-203ENST00000397442 SMARCA2P51531 1590 aa48.48■■■■■ 5.35
CPNE1-203ENST00000397442 TOP2AP11388 1531 aaKnown RBP48.34■■■■■ 5.33
CPNE1-203ENST00000397442 CC2D2AQ9P2K1 1620 aa48.32■■■■■ 5.33
CPNE1-203ENST00000397442 NCAPD3P42695 1498 aa48.23■■■■■ 5.31
CPNE1-203ENST00000397442 BAZ1BQ9UIG0 1483 aaKnown RBP48.19■■■■■ 5.31
CPNE1-203ENST00000397442 HMGXB3Q12766 1538 aa48.12■■■■■ 5.29
CPNE1-203ENST00000397442 CCDC88BA6NC98 1476 aa47.82■■■■■ 5.25
CPNE1-203ENST00000397442 DNAJC5BQ9UF47 199 aa47.64■■■■■ 5.22
CPNE1-203ENST00000397442 CFTRP13569 1480 aa46.99■■■■■ 5.11
CPNE1-203ENST00000397442 CHIC1Q5VXU3 224 aa46.94■■■■■ 5.1
CPNE1-203ENST00000397442 CADPSQ9ULU8 1353 aa46.92■■■■■ 5.1
CPNE1-203ENST00000397442 PRDM2Q13029 1718 aa46.74■■■■■ 5.07
CPNE1-203ENST00000397442 NESP48681 1621 aa46.7■■■■■ 5.07
CPNE1-203ENST00000397442 LAMC3Q9Y6N6 1575 aa46.67■■■■■ 5.06
CPNE1-203ENST00000397442 ABCC8Q09428 1581 aa46.61■■■■■ 5.05
CPNE1-203ENST00000397442 FANCD2Q9BXW9 1451 aa46.39■■■■■ 5.02
CPNE1-203ENST00000397442 TRIM41Q8WV44 630 aa46.39■■■■■ 5.02
CPNE1-203ENST00000397442 WRNQ14191 1432 aaPredicted RBP eCLIP46.38■■■■■ 5.02
CPNE1-203ENST00000397442 PDS5BQ9NTI5 1447 aa46.29■■■■■ 5
CPNE1-203ENST00000397442 SYNJ1O43426 1573 aa46.25■■■■■ 4.99
CPNE1-203ENST00000397442 CEP164Q9UPV0 1460 aa46.15■■■■■ 4.98
CPNE1-203ENST00000397442 KIF21AQ7Z4S6 1674 aa46.15■■■■■ 4.98
CPNE1-203ENST00000397442 CUX1P39880 1505 aa46.13■■■■■ 4.98
CPNE1-203ENST00000397442 TOP2BQ02880 1626 aa46.11■■■■■ 4.97
CPNE1-203ENST00000397442 BIVM-ERCC5R4GMW8 1640 aa46.09■■■■■ 4.97
CPNE1-203ENST00000397442 DNMBPQ6XZF7 1577 aa45.89■■■■■ 4.94
CPNE1-203ENST00000397442 URB2Q14146 1524 aaKnown RBP45.88■■■■■ 4.93
CPNE1-203ENST00000397442 TOPBP1Q92547 1522 aa45.85■■■■■ 4.93
CPNE1-203ENST00000397442 ERCC6Q03468 1493 aa45.78■■■■■ 4.92
CPNE1-203ENST00000397442 MRC2Q9UBG0 1479 aa45.75■■■■■ 4.91
CPNE1-203ENST00000397442 FGD5Q6ZNL6 1462 aa45.7■■■■■ 4.91
CPNE1-203ENST00000397442 SOGA1O94964 1423 aa45.61■■■■■ 4.89
CPNE1-203ENST00000397442 POLA1P09884 1462 aaPredicted RBP45.58■■■■■ 4.89
CPNE1-203ENST00000397442 THOC2Q8NI27 1593 aaKnown RBP45.57■■■■■ 4.89
CPNE1-203ENST00000397442 WDR62O43379 1518 aa45.57■■■■■ 4.89
CPNE1-203ENST00000397442 RUSC2Q8N2Y8 1516 aa45.5■■■■■ 4.87
CPNE1-203ENST00000397442 FAM9AQ8IZU1 332 aaPredicted RBP45.48■■■■■ 4.87
CPNE1-203ENST00000397442 RAD54L2Q9Y4B4 1467 aa45.4■■■■■ 4.86
CPNE1-203ENST00000397442 EEA1Q15075 1411 aa45.39■■■■■ 4.86
CPNE1-203ENST00000397442 ABCA10Q8WWZ4 1543 aa45.31■■■■■ 4.84
CPNE1-203ENST00000397442 CUX2O14529 1486 aa45.28■■■■■ 4.84
CPNE1-203ENST00000397442 WDR97A6NE52 1622 aa45.25■■■■■ 4.83
CPNE1-203ENST00000397442 KIF27Q86VH2 1401 aa45.24■■■■■ 4.83
CPNE1-203ENST00000397442 TARBP1Q13395 1621 aaKnown RBP45.24■■■■■ 4.83
CPNE1-203ENST00000397442 CSRNP3Q8WYN3 585 aa45.18■■■■■ 4.82
CPNE1-203ENST00000397442 IFT140Q96RY7 1462 aa45.1■■■■■ 4.81
CPNE1-203ENST00000397442 LOC105371045A0A1W2PR82 267 aa45.08■■■■■ 4.81
CPNE1-203ENST00000397442 ABCA5Q8WWZ7 1642 aa45■■■■■ 4.79
CPNE1-203ENST00000397442 TDRD9Q8NDG6 1382 aaKnown RBP45■■■■■ 4.79
CPNE1-203ENST00000397442 IGF1RP08069 1367 aa44.94■■■■■ 4.78
CPNE1-203ENST00000397442 GAPVD1Q14C86 1478 aa44.89■■■■■ 4.78
CPNE1-203ENST00000397442 KIF21BO75037 1637 aa44.88■■■■■ 4.78
CPNE1-203ENST00000397442 ZNF608Q9ULD9 1512 aaPredicted RBP44.88■■■■■ 4.78
CPNE1-203ENST00000397442 PRXQ9BXM0 1461 aa44.85■■■■■ 4.77
CPNE1-203ENST00000397442 AQRO60306 1485 aaKnown RBP eCLIP44.82■■■■■ 4.773e-7■■■■■ 27
CPNE1-203ENST00000397442 EHMT2Q96KQ7 1210 aa44.82■■■■■ 4.77
CPNE1-203ENST00000397442 ERICH3Q5RHP9 1530 aa44.76■■■■■ 4.76
CPNE1-203ENST00000397442 GOLGA3Q08378 1498 aa44.74■■■■■ 4.75
CPNE1-203ENST00000397442 EIF4G3O43432 1585 aaKnown RBP44.72■■■■■ 4.75
CPNE1-203ENST00000397442 RAPGEF2Q9Y4G8 1499 aa44.72■■■■■ 4.75
CPNE1-203ENST00000397442 PBRM1Q86U86 1689 aa44.71■■■■■ 4.75
CPNE1-203ENST00000397442 CARMIL1Q5VZK9 1371 aa44.67■■■■■ 4.74
CPNE1-203ENST00000397442 CUL7Q14999 1698 aa44.65■■■■■ 4.74
CPNE1-203ENST00000397442 GRIN2BQ13224 1484 aa44.63■■■■■ 4.74
CPNE1-203ENST00000397442 TNIKQ9UKE5 1360 aa44.5■■■■■ 4.71
CPNE1-203ENST00000397442 UBTFP17480 764 aaKnown RBP44.48■■■■■ 4.71
CPNE1-203ENST00000397442 ADAMTS12P58397 1594 aa44.45■■■■■ 4.71
CPNE1-203ENST00000397442 SNAPC4Q5SXM2 1469 aa44.4■■■■■ 4.7
CPNE1-203ENST00000397442 FHAD1B1AJZ9 1412 aa44.4■■■■■ 4.7
CPNE1-203ENST00000397442 MAGI1Q96QZ7 1491 aaPredicted RBP44.33■■■■■ 4.69
CPNE1-203ENST00000397442 CEP162Q5TB80 1403 aa44.2■■■■■ 4.67
CPNE1-203ENST00000397442 SYNJ2O15056 1496 aa44.17■■■■■ 4.66
CPNE1-203ENST00000397442 GRIN2AQ12879 1464 aa44.1■■■■■ 4.65
CPNE1-203ENST00000397442 CTTNBP2Q8WZ74 1663 aa44.08■■■■■ 4.65
CPNE1-203ENST00000397442 CHMP7Q8WUX9 453 aaPredicted RBP44.01■■■■■ 4.64
CPNE1-203ENST00000397442 CLIP1P30622 1438 aa43.99■■■■■ 4.63
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms