Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 AC006077.2-201ENST00000623591 457 ntBASIC29.74■■■□□ 2.35
TPM1P09493 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC29.74■■■□□ 2.35
TPM1P09493 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC29.73■■■□□ 2.35
TPM1P09493 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
TPM1P09493 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
TPM1P09493 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC29.69■■■□□ 2.34
TPM1P09493 ABCB10P3-201ENST00000561950 2166 ntBASIC29.68■■■□□ 2.34
TPM1P09493 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC29.68■■■□□ 2.34
TPM1P09493 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
TPM1P09493 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC29.67■■■□□ 2.34
TPM1P09493 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC29.65■■■□□ 2.34
TPM1P09493 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
TPM1P09493 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
TPM1P09493 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
TPM1P09493 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
TPM1P09493 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
TPM1P09493 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
TPM1P09493 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC29.59■■■□□ 2.33
TPM1P09493 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC29.59■■■□□ 2.33
TPM1P09493 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC29.59■■■□□ 2.33
TPM1P09493 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
TPM1P09493 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC29.59■■■□□ 2.33
TPM1P09493 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC29.59■■■□□ 2.33
TPM1P09493 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC29.58■■■□□ 2.33
TPM1P09493 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC29.58■■■□□ 2.33
TPM1P09493 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC29.58■■■□□ 2.33
TPM1P09493 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
TPM1P09493 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
TPM1P09493 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
TPM1P09493 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC29.56■■■□□ 2.32
TPM1P09493 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
TPM1P09493 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
TPM1P09493 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC29.55■■■□□ 2.32
TPM1P09493 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC29.54■■■□□ 2.32
TPM1P09493 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC29.54■■■□□ 2.32
TPM1P09493 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
TPM1P09493 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
TPM1P09493 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
TPM1P09493 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC29.52■■■□□ 2.32
TPM1P09493 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
TPM1P09493 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC29.5■■■□□ 2.31
TPM1P09493 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
TPM1P09493 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
TPM1P09493 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
TPM1P09493 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC29.48■■■□□ 2.31
TPM1P09493 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
TPM1P09493 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
TPM1P09493 SHF-206ENST00000560471 2499 ntTSL 5 BASIC29.46■■■□□ 2.31
TPM1P09493 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC29.45■■■□□ 2.31
TPM1P09493 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
TPM1P09493 ZNRF2P1-201ENST00000441407 443 ntBASIC29.44■■■□□ 2.3
TPM1P09493 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
TPM1P09493 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC29.43■■■□□ 2.3
TPM1P09493 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC29.42■■■□□ 2.3
TPM1P09493 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
TPM1P09493 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC29.4■■■□□ 2.3
TPM1P09493 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
TPM1P09493 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC29.39■■■□□ 2.3
TPM1P09493 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC29.38■■■□□ 2.29
TPM1P09493 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC29.38■■■□□ 2.29
TPM1P09493 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
TPM1P09493 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
TPM1P09493 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC29.37■■■□□ 2.29
TPM1P09493 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
TPM1P09493 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC29.37■■■□□ 2.29
TPM1P09493 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
TPM1P09493 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC29.36■■■□□ 2.29
TPM1P09493 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
TPM1P09493 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC29.35■■■□□ 2.29
TPM1P09493 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC29.35■■■□□ 2.29
TPM1P09493 AC139426.1-201ENST00000568218 2529 ntBASIC29.34■■■□□ 2.29
TPM1P09493 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
TPM1P09493 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC29.31■■■□□ 2.28
TPM1P09493 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC29.31■■■□□ 2.28
TPM1P09493 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
TPM1P09493 ST7-AS1-201ENST00000456775 1889 ntBASIC29.29■■■□□ 2.28
TPM1P09493 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC29.29■■■□□ 2.28
TPM1P09493 EBPL-203ENST00000378270 579 ntTSL 2 BASIC29.29■■■□□ 2.28
TPM1P09493 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
TPM1P09493 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
TPM1P09493 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
TPM1P09493 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC29.28■■■□□ 2.28
TPM1P09493 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
TPM1P09493 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC29.27■■■□□ 2.28
TPM1P09493 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC29.27■■■□□ 2.28
TPM1P09493 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.28
TPM1P09493 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
TPM1P09493 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC29.26■■■□□ 2.27
TPM1P09493 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC29.26■■■□□ 2.27
TPM1P09493 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC29.24■■■□□ 2.27
TPM1P09493 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC29.23■■■□□ 2.27
TPM1P09493 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
TPM1P09493 DYNLL1-208ENST00000550178 581 ntBASIC29.23■■■□□ 2.27
TPM1P09493 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
TPM1P09493 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC29.23■■■□□ 2.27
TPM1P09493 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC29.23■■■□□ 2.27
TPM1P09493 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC29.2■■■□□ 2.26
TPM1P09493 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
TPM1P09493 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC29.19■■■□□ 2.26
TPM1P09493 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC29.17■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms