Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
SF3A1Q15459 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC30.61■■■□□ 2.49
SF3A1Q15459 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
SF3A1Q15459 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
SF3A1Q15459 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC30.6■■■□□ 2.49
SF3A1Q15459 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC30.58■■■□□ 2.49
SF3A1Q15459 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
SF3A1Q15459 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC30.57■■■□□ 2.48
SF3A1Q15459 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
SF3A1Q15459 RARRES2P7-201ENST00000567349 469 ntBASIC30.57■■■□□ 2.48
SF3A1Q15459 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC30.57■■■□□ 2.48
SF3A1Q15459 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
SF3A1Q15459 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
SF3A1Q15459 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC30.55■■■□□ 2.48
SF3A1Q15459 ST7-AS1-201ENST00000456775 1889 ntBASIC30.55■■■□□ 2.48
SF3A1Q15459 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC30.54■■■□□ 2.48
SF3A1Q15459 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC30.54■■■□□ 2.48
SF3A1Q15459 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
SF3A1Q15459 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC30.54■■■□□ 2.48
SF3A1Q15459 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
SF3A1Q15459 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
SF3A1Q15459 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
SF3A1Q15459 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.48
SF3A1Q15459 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
SF3A1Q15459 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC30.51■■■□□ 2.47
SF3A1Q15459 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
SF3A1Q15459 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC30.5■■■□□ 2.47
SF3A1Q15459 SETD8P1-201ENST00000623146 1180 ntBASIC30.5■■■□□ 2.47
SF3A1Q15459 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC30.48■■■□□ 2.47
SF3A1Q15459 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
SF3A1Q15459 AC139426.1-201ENST00000568218 2529 ntBASIC30.48■■■□□ 2.47
SF3A1Q15459 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC30.47■■■□□ 2.47
SF3A1Q15459 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
SF3A1Q15459 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
SF3A1Q15459 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
SF3A1Q15459 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
SF3A1Q15459 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC30.47■■■□□ 2.47
SF3A1Q15459 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC30.46■■■□□ 2.47
SF3A1Q15459 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
SF3A1Q15459 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
SF3A1Q15459 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
SF3A1Q15459 AL135925.1-201ENST00000605920 1701 ntBASIC30.45■■■□□ 2.47
SF3A1Q15459 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC30.44■■■□□ 2.46
SF3A1Q15459 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
SF3A1Q15459 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
SF3A1Q15459 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
SF3A1Q15459 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC30.41■■■□□ 2.46
SF3A1Q15459 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
SF3A1Q15459 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
SF3A1Q15459 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.39■■■□□ 2.46
SF3A1Q15459 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
SF3A1Q15459 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
SF3A1Q15459 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
SF3A1Q15459 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
SF3A1Q15459 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
SF3A1Q15459 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
SF3A1Q15459 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC30.35■■■□□ 2.45
SF3A1Q15459 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
SF3A1Q15459 SHF-206ENST00000560471 2499 ntTSL 5 BASIC30.35■■■□□ 2.45
SF3A1Q15459 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
SF3A1Q15459 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC30.34■■■□□ 2.45
SF3A1Q15459 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC30.34■■■□□ 2.45
SF3A1Q15459 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
SF3A1Q15459 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
SF3A1Q15459 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC30.33■■■□□ 2.45
SF3A1Q15459 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC30.32■■■□□ 2.44
SF3A1Q15459 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
SF3A1Q15459 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC30.32■■■□□ 2.44
SF3A1Q15459 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC30.31■■■□□ 2.44
SF3A1Q15459 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC30.31■■■□□ 2.44
SF3A1Q15459 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC30.3■■■□□ 2.44
SF3A1Q15459 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
SF3A1Q15459 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC30.28■■■□□ 2.44
SF3A1Q15459 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
SF3A1Q15459 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC30.28■■■□□ 2.44
SF3A1Q15459 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC30.28■■■□□ 2.44
SF3A1Q15459 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
SF3A1Q15459 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC30.27■■■□□ 2.44
SF3A1Q15459 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC30.27■■■□□ 2.44
SF3A1Q15459 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC30.26■■■□□ 2.43
SF3A1Q15459 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
SF3A1Q15459 AC136428.2-201ENST00000563187 214 ntBASIC30.24■■■□□ 2.43
SF3A1Q15459 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
SF3A1Q15459 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC30.24■■■□□ 2.43
SF3A1Q15459 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
SF3A1Q15459 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
SF3A1Q15459 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
SF3A1Q15459 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC30.22■■■□□ 2.43
SF3A1Q15459 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
SF3A1Q15459 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
SF3A1Q15459 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC30.21■■■□□ 2.43
SF3A1Q15459 CAHM-201ENST00000604200 896 ntBASIC30.21■■■□□ 2.43
SF3A1Q15459 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.2■■■□□ 2.43
SF3A1Q15459 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC30.2■■■□□ 2.43
SF3A1Q15459 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC30.2■■■□□ 2.42
SF3A1Q15459 AL391121.1-201ENST00000607967 1349 ntBASIC30.2■■■□□ 2.42
SF3A1Q15459 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC30.19■■■□□ 2.42
SF3A1Q15459 AC097358.2-201ENST00000607541 1159 ntBASIC30.19■■■□□ 2.42
SF3A1Q15459 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC30.19■■■□□ 2.42
SF3A1Q15459 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms