RNA–Protein interactions for RNA: ENST00000043402.7

RTN4R-201, Transcript of reticulon 4 receptor, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene RTN4R, Length 2,157 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4R-201ENST00000043402 NISCHQ9Y2I1 1504 aa56.49■■■■■ 6.63
RTN4R-201ENST00000043402 CCDC180Q9P1Z9 1646 aa48.54■■■■■ 5.36
RTN4R-201ENST00000043402 ZCCHC6Q5VYS8 1495 aaKnown RBP47.65■■■■■ 5.22
RTN4R-201ENST00000043402 SHROOM4Q9ULL8 1493 aa47.21■■■■■ 5.15
RTN4R-201ENST00000043402 DCAF8L2P0C7V8 631 aa46.65■■■■■ 5.06
RTN4R-201ENST00000043402 DCAF1Q9Y4B6 1507 aa46.51■■■■■ 5.04
RTN4R-201ENST00000043402 SUPT5HO00267 1087 aaKnown RBP45.91■■■■■ 4.94
RTN4R-201ENST00000043402 MYO15BQ96JP2 1530 aa45.51■■■■■ 4.88
RTN4R-201ENST00000043402 ABCC9O60706 1549 aa45.34■■■■■ 4.85
RTN4R-201ENST00000043402 SCRIBQ14160 1630 aa45.11■■■■■ 4.81
RTN4R-201ENST00000043402 NACADO15069 1562 aa45.02■■■■■ 4.8
RTN4R-201ENST00000043402 CHIC1Q5VXU3 224 aa44.42■■■■■ 4.7
RTN4R-201ENST00000043402 RB1CC1Q8TDY2 1594 aa44.4■■■■■ 4.7
RTN4R-201ENST00000043402 RSF1Q96T23 1441 aaPredicted RBP44.33■■■■■ 4.69
RTN4R-201ENST00000043402 CECR2Q9BXF3 1484 aa44.01■■■■■ 4.64
RTN4R-201ENST00000043402 MROH2BQ7Z745 1585 aa43.81■■■■■ 4.6
RTN4R-201ENST00000043402 UNC13AQ9UPW8 1703 aa43.75■■■■■ 4.59
RTN4R-201ENST00000043402 WIZO95785 1651 aa43.53■■■■■ 4.56
RTN4R-201ENST00000043402 BAZ1AQ9NRL2 1556 aaPredicted RBP43.45■■■■■ 4.55
RTN4R-201ENST00000043402 BICRAQ9NZM4 1560 aa43.24■■■■■ 4.51
RTN4R-201ENST00000043402 SMARCA4P51532 1647 aa43.19■■■■■ 4.51
RTN4R-201ENST00000043402 PABPN1Q86U42 306 aaKnown RBP eCLIP43.11■■■■■ 4.49
RTN4R-201ENST00000043402 LOC105371045A0A1W2PR82 267 aa42.94■■■■■ 4.46
RTN4R-201ENST00000043402 TRIM41Q8WV44 630 aa42.93■■■■■ 4.46
RTN4R-201ENST00000043402 TOP2AP11388 1531 aaKnown RBP42.91■■■■■ 4.46
RTN4R-201ENST00000043402 EIF4G1Q04637 1599 aaKnown RBP42.71■■■■■ 4.43
RTN4R-201ENST00000043402 CCDC88BA6NC98 1476 aa42.64■■■■■ 4.42
RTN4R-201ENST00000043402 SMARCA2P51531 1590 aa42.63■■■■■ 4.42
RTN4R-201ENST00000043402 PEG3Q9GZU2 1588 aa42.52■■■■■ 4.4
RTN4R-201ENST00000043402 FAM9AQ8IZU1 332 aaPredicted RBP42.39■■■■■ 4.38
RTN4R-201ENST00000043402 ATAD2BQ9ULI0 1458 aa42.26■■■■■ 4.35
RTN4R-201ENST00000043402 ABCC8Q09428 1581 aa42.19■■■■■ 4.34
RTN4R-201ENST00000043402 BAZ1BQ9UIG0 1483 aaKnown RBP42.05■■■■■ 4.32
RTN4R-201ENST00000043402 PCGF6Q9BYE7 350 aa42.05■■■■■ 4.32
RTN4R-201ENST00000043402 EHMT2Q96KQ7 1210 aa41.92■■■■■ 4.3
RTN4R-201ENST00000043402 WRNQ14191 1432 aaPredicted RBP eCLIP41.65■■■■■ 4.26
RTN4R-201ENST00000043402 SOGA1O94964 1423 aa41.63■■■■■ 4.26
RTN4R-201ENST00000043402 NCAPD3P42695 1498 aa41.63■■■■■ 4.26
RTN4R-201ENST00000043402 HMGXB3Q12766 1538 aa41.6■■■■■ 4.25
RTN4R-201ENST00000043402 HRCP23327 699 aa41.59■■■■■ 4.25
RTN4R-201ENST00000043402 TRIM26Q12899 539 aaPredicted RBP41.57■■■■■ 4.25
RTN4R-201ENST00000043402 SYNJ1O43426 1573 aa41.49■■■■■ 4.23
RTN4R-201ENST00000043402 RUSC2Q8N2Y8 1516 aa41.47■■■■■ 4.23
RTN4R-201ENST00000043402 EEA1Q15075 1411 aa41.43■■■■■ 4.22
RTN4R-201ENST00000043402 CSRNP3Q8WYN3 585 aa41.33■■■■■ 4.21
RTN4R-201ENST00000043402 TNIKQ9UKE5 1360 aa41.13■■■■■ 4.18
RTN4R-201ENST00000043402 TOP2BQ02880 1626 aa41.12■■■■■ 4.17
RTN4R-201ENST00000043402 CEP162Q5TB80 1403 aa41.07■■■■■ 4.17
RTN4R-201ENST00000043402 CFTRP13569 1480 aa41.05■■■■■ 4.16
RTN4R-201ENST00000043402 GOLGA3Q08378 1498 aa41.03■■■■■ 4.16
RTN4R-201ENST00000043402 BIVM-ERCC5R4GMW8 1640 aa41.02■■■■■ 4.16
RTN4R-201ENST00000043402 UBTFP17480 764 aaKnown RBP40.97■■■■■ 4.15
RTN4R-201ENST00000043402 CC2D2AQ9P2K1 1620 aa40.95■■■■■ 4.15
RTN4R-201ENST00000043402 PPARGC1BQ86YN6 1023 aaKnown RBP40.92■■■■■ 4.14
RTN4R-201ENST00000043402 KIF21BO75037 1637 aa40.91■■■■■ 4.14
RTN4R-201ENST00000043402 CEP164Q9UPV0 1460 aa40.9■■■■■ 4.14
RTN4R-201ENST00000043402 CUX1P39880 1505 aa40.86■■■■■ 4.13
RTN4R-201ENST00000043402 PRDM2Q13029 1718 aa40.77■■■■■ 4.12
RTN4R-201ENST00000043402 CADPSQ9ULU8 1353 aa40.7■■■■■ 4.11
RTN4R-201ENST00000043402 RAPGEF2Q9Y4G8 1499 aa40.68■■■■■ 4.1
RTN4R-201ENST00000043402 CLIP1P30622 1438 aa40.49■■■■■ 4.07
RTN4R-201ENST00000043402 PRXQ9BXM0 1461 aa40.48■■■■■ 4.07
RTN4R-201ENST00000043402 KIF27Q86VH2 1401 aa40.44■■■■■ 4.06
RTN4R-201ENST00000043402 ERICH3Q5RHP9 1530 aa40.42■■■■■ 4.06
RTN4R-201ENST00000043402 TTBK1Q5TCY1 1321 aaPredicted RBP40.37■■■■■ 4.05
RTN4R-201ENST00000043402 ZEB1P37275 1124 aaPredicted RBP40.31■■■■■ 4.04
RTN4R-201ENST00000043402 FANCD2Q9BXW9 1451 aa40.28■■■■■ 4.04
RTN4R-201ENST00000043402 VPS8Q8N3P4 1428 aa40.25■■■■■ 4.03
RTN4R-201ENST00000043402 FGD5Q6ZNL6 1462 aa40.22■■■■■ 4.03
RTN4R-201ENST00000043402 RANGAP1P46060 587 aaPredicted RBP40.2■■■■■ 4.03
RTN4R-201ENST00000043402 NESP48681 1621 aa40.19■■■■■ 4.03
RTN4R-201ENST00000043402 CUX2O14529 1486 aa40.18■■■■■ 4.02
RTN4R-201ENST00000043402 IGF1RP08069 1367 aa40.08■■■■■ 4.01
RTN4R-201ENST00000043402 DNMBPQ6XZF7 1577 aa40.03■■■■■ 4
RTN4R-201ENST00000043402 LAMC3Q9Y6N6 1575 aa39.99■■■■□ 3.99
RTN4R-201ENST00000043402 ARAP1Q96P48 1450 aa39.99■■■■□ 3.99
RTN4R-201ENST00000043402 DNAJC5BQ9UF47 199 aa39.99■■■■□ 3.99
RTN4R-201ENST00000043402 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP39.98■■■■□ 3.99
RTN4R-201ENST00000043402 TOPBP1Q92547 1522 aa39.96■■■■□ 3.99
RTN4R-201ENST00000043402 POLA1P09884 1462 aaPredicted RBP39.88■■■■□ 3.97
RTN4R-201ENST00000043402 RAD54L2Q9Y4B4 1467 aa39.87■■■■□ 3.97
RTN4R-201ENST00000043402 APLP2Q06481 763 aa39.87■■■■□ 3.97
RTN4R-201ENST00000043402 CARMIL1Q5VZK9 1371 aa39.87■■■■□ 3.97
RTN4R-201ENST00000043402 CCER1Q8TC90 406 aaPredicted RBP39.82■■■■□ 3.97
RTN4R-201ENST00000043402 ABCA10Q8WWZ4 1543 aa39.81■■■■□ 3.96
RTN4R-201ENST00000043402 ARHGAP35Q9NRY4 1499 aa39.79■■■■□ 3.96
RTN4R-201ENST00000043402 URB2Q14146 1524 aaKnown RBP39.77■■■■□ 3.96
RTN4R-201ENST00000043402 PDS5BQ9NTI5 1447 aa39.68■■■■□ 3.94
RTN4R-201ENST00000043402 KIF21AQ7Z4S6 1674 aa39.58■■■■□ 3.93
RTN4R-201ENST00000043402 WDR97A6NE52 1622 aa39.57■■■■□ 3.92
RTN4R-201ENST00000043402 KANK4Q5T7N3 995 aaPredicted RBP39.56■■■■□ 3.92
RTN4R-201ENST00000043402 HNRNPUL2Q1KMD3 747 aaKnown RBP39.52■■■■□ 3.92
RTN4R-201ENST00000043402 CUL7Q14999 1698 aa39.48■■■■□ 3.91
RTN4R-201ENST00000043402 ABCA5Q8WWZ7 1642 aa39.4■■■■□ 3.9
RTN4R-201ENST00000043402 TDRD9Q8NDG6 1382 aaKnown RBP39.4■■■■□ 3.9
RTN4R-201ENST00000043402 GAPVD1Q14C86 1478 aa39.31■■■■□ 3.88
RTN4R-201ENST00000043402 TARBP1Q13395 1621 aaKnown RBP39.27■■■■□ 3.88
RTN4R-201ENST00000043402 CTTNBP2Q8WZ74 1663 aa39.26■■■■□ 3.88
RTN4R-201ENST00000043402 RRBP1Q9P2E9 1410 aaKnown RBP39.22■■■■□ 3.87
RTN4R-201ENST00000043402 TIAM1Q13009 1591 aa39.22■■■■□ 3.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms