Protein–RNA interactions for Protein: Q9Y5H5

PCDHA9, Protocadherin alpha-9, humanhuman

Predictions only

Length 950 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9Q9Y5H5 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
PCDHA9Q9Y5H5 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
PCDHA9Q9Y5H5 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
PCDHA9Q9Y5H5 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
PCDHA9Q9Y5H5 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC26.14■■□□□ 1.78
PCDHA9Q9Y5H5 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
PCDHA9Q9Y5H5 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
PCDHA9Q9Y5H5 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
PCDHA9Q9Y5H5 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC26.13■■□□□ 1.77
PCDHA9Q9Y5H5 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC26.13■■□□□ 1.77
PCDHA9Q9Y5H5 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC26.12■■□□□ 1.77
PCDHA9Q9Y5H5 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC26.12■■□□□ 1.77
PCDHA9Q9Y5H5 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC26.11■■□□□ 1.77
PCDHA9Q9Y5H5 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC26.1■■□□□ 1.77
PCDHA9Q9Y5H5 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC26.09■■□□□ 1.77
PCDHA9Q9Y5H5 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
PCDHA9Q9Y5H5 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
PCDHA9Q9Y5H5 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
PCDHA9Q9Y5H5 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC26.07■■□□□ 1.76
PCDHA9Q9Y5H5 ABCB10P3-201ENST00000561950 2166 ntBASIC26.07■■□□□ 1.76
PCDHA9Q9Y5H5 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC26.07■■□□□ 1.76
PCDHA9Q9Y5H5 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC26.07■■□□□ 1.76
PCDHA9Q9Y5H5 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC26.06■■□□□ 1.76
PCDHA9Q9Y5H5 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
PCDHA9Q9Y5H5 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC26.06■■□□□ 1.76
PCDHA9Q9Y5H5 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHA9Q9Y5H5 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHA9Q9Y5H5 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHA9Q9Y5H5 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHA9Q9Y5H5 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PCDHA9Q9Y5H5 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
PCDHA9Q9Y5H5 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
PCDHA9Q9Y5H5 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
PCDHA9Q9Y5H5 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC26.02■■□□□ 1.76
PCDHA9Q9Y5H5 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC26.02■■□□□ 1.76
PCDHA9Q9Y5H5 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
PCDHA9Q9Y5H5 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
PCDHA9Q9Y5H5 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC26■■□□□ 1.75
PCDHA9Q9Y5H5 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC26■■□□□ 1.75
PCDHA9Q9Y5H5 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
PCDHA9Q9Y5H5 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC25.98■■□□□ 1.75
PCDHA9Q9Y5H5 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
PCDHA9Q9Y5H5 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC25.96■■□□□ 1.75
PCDHA9Q9Y5H5 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC25.95■■□□□ 1.75
PCDHA9Q9Y5H5 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
PCDHA9Q9Y5H5 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
PCDHA9Q9Y5H5 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
PCDHA9Q9Y5H5 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC25.93■■□□□ 1.74
PCDHA9Q9Y5H5 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC25.92■■□□□ 1.74
PCDHA9Q9Y5H5 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
PCDHA9Q9Y5H5 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC25.92■■□□□ 1.74
PCDHA9Q9Y5H5 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC25.91■■□□□ 1.74
PCDHA9Q9Y5H5 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
PCDHA9Q9Y5H5 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC25.9■■□□□ 1.74
PCDHA9Q9Y5H5 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
PCDHA9Q9Y5H5 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
PCDHA9Q9Y5H5 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
PCDHA9Q9Y5H5 SHF-206ENST00000560471 2499 ntTSL 5 BASIC25.88■■□□□ 1.73
PCDHA9Q9Y5H5 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC25.87■■□□□ 1.73
PCDHA9Q9Y5H5 KLF16-203ENST00000592313 508 ntTSL 3 BASIC25.87■■□□□ 1.73
PCDHA9Q9Y5H5 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC25.87■■□□□ 1.73
PCDHA9Q9Y5H5 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
PCDHA9Q9Y5H5 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
PCDHA9Q9Y5H5 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
PCDHA9Q9Y5H5 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
PCDHA9Q9Y5H5 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
PCDHA9Q9Y5H5 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC25.82■■□□□ 1.72
PCDHA9Q9Y5H5 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
PCDHA9Q9Y5H5 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
PCDHA9Q9Y5H5 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
PCDHA9Q9Y5H5 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC25.81■■□□□ 1.72
PCDHA9Q9Y5H5 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC25.81■■□□□ 1.72
PCDHA9Q9Y5H5 AC139426.1-201ENST00000568218 2529 ntBASIC25.79■■□□□ 1.72
PCDHA9Q9Y5H5 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC25.79■■□□□ 1.72
PCDHA9Q9Y5H5 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
PCDHA9Q9Y5H5 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
PCDHA9Q9Y5H5 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC25.75■■□□□ 1.71
PCDHA9Q9Y5H5 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC25.75■■□□□ 1.71
PCDHA9Q9Y5H5 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
PCDHA9Q9Y5H5 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC25.74■■□□□ 1.71
PCDHA9Q9Y5H5 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
PCDHA9Q9Y5H5 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC25.72■■□□□ 1.71
PCDHA9Q9Y5H5 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
PCDHA9Q9Y5H5 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC25.71■■□□□ 1.71
PCDHA9Q9Y5H5 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC25.71■■□□□ 1.71
PCDHA9Q9Y5H5 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC25.7■■□□□ 1.7
PCDHA9Q9Y5H5 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
PCDHA9Q9Y5H5 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
PCDHA9Q9Y5H5 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
PCDHA9Q9Y5H5 RARRES2P7-201ENST00000567349 469 ntBASIC25.69■■□□□ 1.7
PCDHA9Q9Y5H5 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC25.69■■□□□ 1.7
PCDHA9Q9Y5H5 AL133380.1-201ENST00000506013 324 ntBASIC25.68■■□□□ 1.7
PCDHA9Q9Y5H5 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC25.68■■□□□ 1.7
PCDHA9Q9Y5H5 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
PCDHA9Q9Y5H5 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
PCDHA9Q9Y5H5 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC25.66■■□□□ 1.7
PCDHA9Q9Y5H5 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
PCDHA9Q9Y5H5 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
PCDHA9Q9Y5H5 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
PCDHA9Q9Y5H5 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC25.65■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 9.3 ms