Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
FOXA2Q9Y261 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
FOXA2Q9Y261 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC21.91■■□□□ 1.1
FOXA2Q9Y261 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
FOXA2Q9Y261 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
FOXA2Q9Y261 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
FOXA2Q9Y261 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
FOXA2Q9Y261 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
FOXA2Q9Y261 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
FOXA2Q9Y261 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC21.89■■□□□ 1.09
FOXA2Q9Y261 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC21.88■■□□□ 1.09
FOXA2Q9Y261 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
FOXA2Q9Y261 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC21.88■■□□□ 1.09
FOXA2Q9Y261 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC21.86■■□□□ 1.09
FOXA2Q9Y261 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC21.86■■□□□ 1.09
FOXA2Q9Y261 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
FOXA2Q9Y261 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
FOXA2Q9Y261 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC21.84■■□□□ 1.09
FOXA2Q9Y261 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC21.84■■□□□ 1.09
FOXA2Q9Y261 ABCB10P1-201ENST00000614297 2181 ntBASIC21.83■■□□□ 1.09
FOXA2Q9Y261 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
FOXA2Q9Y261 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC21.82■■□□□ 1.08
FOXA2Q9Y261 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC21.82■■□□□ 1.08
FOXA2Q9Y261 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC21.81■■□□□ 1.08
FOXA2Q9Y261 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
FOXA2Q9Y261 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
FOXA2Q9Y261 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
FOXA2Q9Y261 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
FOXA2Q9Y261 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
FOXA2Q9Y261 KLF16-203ENST00000592313 508 ntTSL 3 BASIC21.77■■□□□ 1.08
FOXA2Q9Y261 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
FOXA2Q9Y261 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
FOXA2Q9Y261 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
FOXA2Q9Y261 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
FOXA2Q9Y261 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
FOXA2Q9Y261 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
FOXA2Q9Y261 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
FOXA2Q9Y261 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
FOXA2Q9Y261 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC21.72■■□□□ 1.07
FOXA2Q9Y261 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
FOXA2Q9Y261 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
FOXA2Q9Y261 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
FOXA2Q9Y261 RARRES2P7-201ENST00000567349 469 ntBASIC21.71■■□□□ 1.07
FOXA2Q9Y261 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
FOXA2Q9Y261 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
FOXA2Q9Y261 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
FOXA2Q9Y261 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
FOXA2Q9Y261 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC21.68■■□□□ 1.06
FOXA2Q9Y261 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
FOXA2Q9Y261 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
FOXA2Q9Y261 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
FOXA2Q9Y261 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
FOXA2Q9Y261 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC21.66■■□□□ 1.06
FOXA2Q9Y261 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
FOXA2Q9Y261 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC21.66■■□□□ 1.06
FOXA2Q9Y261 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
FOXA2Q9Y261 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
FOXA2Q9Y261 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC21.65■■□□□ 1.06
FOXA2Q9Y261 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
FOXA2Q9Y261 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
FOXA2Q9Y261 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
FOXA2Q9Y261 ABCB10P3-201ENST00000561950 2166 ntBASIC21.64■■□□□ 1.06
FOXA2Q9Y261 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
FOXA2Q9Y261 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
FOXA2Q9Y261 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC21.64■■□□□ 1.05
FOXA2Q9Y261 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
FOXA2Q9Y261 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
FOXA2Q9Y261 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
FOXA2Q9Y261 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC21.63■■□□□ 1.05
FOXA2Q9Y261 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
FOXA2Q9Y261 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
FOXA2Q9Y261 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
FOXA2Q9Y261 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
FOXA2Q9Y261 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
FOXA2Q9Y261 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
FOXA2Q9Y261 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
FOXA2Q9Y261 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC21.58■■□□□ 1.05
FOXA2Q9Y261 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
FOXA2Q9Y261 AL161658.1-201ENST00000623641 1967 ntBASIC21.58■■□□□ 1.05
FOXA2Q9Y261 SETD8P1-201ENST00000623146 1180 ntBASIC21.58■■□□□ 1.05
FOXA2Q9Y261 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
FOXA2Q9Y261 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
FOXA2Q9Y261 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
FOXA2Q9Y261 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC21.55■■□□□ 1.04
FOXA2Q9Y261 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
FOXA2Q9Y261 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
FOXA2Q9Y261 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
FOXA2Q9Y261 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
FOXA2Q9Y261 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC21.54■■□□□ 1.04
FOXA2Q9Y261 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
FOXA2Q9Y261 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC21.54■■□□□ 1.04
FOXA2Q9Y261 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
FOXA2Q9Y261 ST7-AS1-201ENST00000456775 1889 ntBASIC21.54■■□□□ 1.04
FOXA2Q9Y261 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC21.53■■□□□ 1.04
FOXA2Q9Y261 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
FOXA2Q9Y261 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
FOXA2Q9Y261 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
FOXA2Q9Y261 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
FOXA2Q9Y261 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
FOXA2Q9Y261 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms