Protein–RNA interactions for Protein: A7MD48

SRRM4, Serine/arginine repetitive matrix protein 4, humanhuman

Known RBP Predictions only

Length 611 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM4A7MD48 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SRRM4A7MD48 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SRRM4A7MD48 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SRRM4A7MD48 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SRRM4A7MD48 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SRRM4A7MD48 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SRRM4A7MD48 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SRRM4A7MD48 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
SRRM4A7MD48 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SRRM4A7MD48 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC21.45■■□□□ 1.02
SRRM4A7MD48 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SRRM4A7MD48 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
SRRM4A7MD48 AL135925.1-201ENST00000605920 1701 ntBASIC21.45■■□□□ 1.02
SRRM4A7MD48 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
SRRM4A7MD48 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SRRM4A7MD48 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC21.44■■□□□ 1.02
SRRM4A7MD48 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SRRM4A7MD48 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SRRM4A7MD48 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SRRM4A7MD48 SETD8P1-201ENST00000623146 1180 ntBASIC21.44■■□□□ 1.02
SRRM4A7MD48 AC139426.1-201ENST00000568218 2529 ntBASIC21.44■■□□□ 1.02
SRRM4A7MD48 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SRRM4A7MD48 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
SRRM4A7MD48 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
SRRM4A7MD48 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
SRRM4A7MD48 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC21.4■■□□□ 1.02
SRRM4A7MD48 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SRRM4A7MD48 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
SRRM4A7MD48 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
SRRM4A7MD48 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC21.39■■□□□ 1.01
SRRM4A7MD48 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
SRRM4A7MD48 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
SRRM4A7MD48 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
SRRM4A7MD48 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SRRM4A7MD48 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
SRRM4A7MD48 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
SRRM4A7MD48 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
SRRM4A7MD48 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
SRRM4A7MD48 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
SRRM4A7MD48 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
SRRM4A7MD48 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
SRRM4A7MD48 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
SRRM4A7MD48 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
SRRM4A7MD48 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
SRRM4A7MD48 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
SRRM4A7MD48 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC21.33■■□□□ 1.01
SRRM4A7MD48 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SRRM4A7MD48 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SRRM4A7MD48 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SRRM4A7MD48 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
SRRM4A7MD48 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
SRRM4A7MD48 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC21.32■■□□□ 1
SRRM4A7MD48 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC21.32■■□□□ 1
SRRM4A7MD48 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC21.31■■□□□ 1
SRRM4A7MD48 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
SRRM4A7MD48 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
SRRM4A7MD48 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SRRM4A7MD48 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC21.31■■□□□ 1
SRRM4A7MD48 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SRRM4A7MD48 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SRRM4A7MD48 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC21.3■■□□□ 1
SRRM4A7MD48 SHF-206ENST00000560471 2499 ntTSL 5 BASIC21.3■■□□□ 1
SRRM4A7MD48 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC21.29■■□□□ 1
SRRM4A7MD48 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
SRRM4A7MD48 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
SRRM4A7MD48 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SRRM4A7MD48 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SRRM4A7MD48 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.27■■□□□ 1
SRRM4A7MD48 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SRRM4A7MD48 AC136428.2-201ENST00000563187 214 ntBASIC21.27■■□□□ 1
SRRM4A7MD48 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SRRM4A7MD48 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SRRM4A7MD48 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SRRM4A7MD48 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SRRM4A7MD48 CAHM-201ENST00000604200 896 ntBASIC21.25■□□□□ 0.99
SRRM4A7MD48 AL391121.1-201ENST00000607967 1349 ntBASIC21.25■□□□□ 0.99
SRRM4A7MD48 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
SRRM4A7MD48 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SRRM4A7MD48 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
SRRM4A7MD48 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC21.24■□□□□ 0.99
SRRM4A7MD48 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC21.24■□□□□ 0.99
SRRM4A7MD48 AC097358.2-201ENST00000607541 1159 ntBASIC21.24■□□□□ 0.99
SRRM4A7MD48 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
SRRM4A7MD48 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
SRRM4A7MD48 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SRRM4A7MD48 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SRRM4A7MD48 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SRRM4A7MD48 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SRRM4A7MD48 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
SRRM4A7MD48 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC21.19■□□□□ 0.98
SRRM4A7MD48 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SRRM4A7MD48 EBPL-202ENST00000378268 680 ntTSL 3 BASIC21.19■□□□□ 0.98
SRRM4A7MD48 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC21.19■□□□□ 0.98
SRRM4A7MD48 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
SRRM4A7MD48 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC21.18■□□□□ 0.98
SRRM4A7MD48 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC21.18■□□□□ 0.98
SRRM4A7MD48 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SRRM4A7MD48 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SRRM4A7MD48 AC010864.1-201ENST00000609407 1511 ntBASIC21.17■□□□□ 0.98
SRRM4A7MD48 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms