Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC23.68■■□□□ 1.38
ABCA4P78363 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23.68■■□□□ 1.38
ABCA4P78363 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC23.68■■□□□ 1.38
ABCA4P78363 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC23.68■■□□□ 1.38
ABCA4P78363 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
ABCA4P78363 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC23.66■■□□□ 1.38
ABCA4P78363 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC23.66■■□□□ 1.38
ABCA4P78363 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC23.66■■□□□ 1.38
ABCA4P78363 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
ABCA4P78363 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC23.66■■□□□ 1.38
ABCA4P78363 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
ABCA4P78363 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC23.65■■□□□ 1.38
ABCA4P78363 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
ABCA4P78363 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.37
ABCA4P78363 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
ABCA4P78363 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
ABCA4P78363 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
ABCA4P78363 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC23.62■■□□□ 1.37
ABCA4P78363 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
ABCA4P78363 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC23.59■■□□□ 1.37
ABCA4P78363 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
ABCA4P78363 HGH1-207ENST00000628266 258 ntTSL 5 BASIC23.57■■□□□ 1.36
ABCA4P78363 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
ABCA4P78363 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
ABCA4P78363 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
ABCA4P78363 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
ABCA4P78363 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
ABCA4P78363 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
ABCA4P78363 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
ABCA4P78363 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
ABCA4P78363 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
ABCA4P78363 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
ABCA4P78363 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC23.53■■□□□ 1.36
ABCA4P78363 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
ABCA4P78363 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
ABCA4P78363 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC23.52■■□□□ 1.36
ABCA4P78363 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
ABCA4P78363 RPS2-202ENST00000526522 924 ntTSL 2 BASIC23.5■■□□□ 1.35
ABCA4P78363 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC23.49■■□□□ 1.35
ABCA4P78363 WASH5P-204ENST00000632292 975 ntBASIC23.49■■□□□ 1.35
ABCA4P78363 MIR4449-201ENST00000578365 66 ntBASIC23.49■■□□□ 1.35
ABCA4P78363 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
ABCA4P78363 RPS2-209ENST00000529806 993 ntTSL 3 BASIC23.47■■□□□ 1.35
ABCA4P78363 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
ABCA4P78363 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC23.46■■□□□ 1.35
ABCA4P78363 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
ABCA4P78363 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
ABCA4P78363 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
ABCA4P78363 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC23.45■■□□□ 1.34
ABCA4P78363 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC23.45■■□□□ 1.34
ABCA4P78363 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
ABCA4P78363 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC23.44■■□□□ 1.34
ABCA4P78363 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC23.43■■□□□ 1.34
ABCA4P78363 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
ABCA4P78363 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
ABCA4P78363 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
ABCA4P78363 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC23.42■■□□□ 1.34
ABCA4P78363 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC23.42■■□□□ 1.34
ABCA4P78363 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
ABCA4P78363 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC23.41■■□□□ 1.34
ABCA4P78363 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
ABCA4P78363 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
ABCA4P78363 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC23.39■■□□□ 1.34
ABCA4P78363 ZNRF2P2-203ENST00000454624 420 ntBASIC23.39■■□□□ 1.33
ABCA4P78363 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
ABCA4P78363 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
ABCA4P78363 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC23.37■■□□□ 1.33
ABCA4P78363 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
ABCA4P78363 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC23.34■■□□□ 1.33
ABCA4P78363 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC23.34■■□□□ 1.33
ABCA4P78363 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
ABCA4P78363 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
ABCA4P78363 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
ABCA4P78363 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
ABCA4P78363 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
ABCA4P78363 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC23.32■■□□□ 1.32
ABCA4P78363 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
ABCA4P78363 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
ABCA4P78363 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC23.32■■□□□ 1.32
ABCA4P78363 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
ABCA4P78363 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
ABCA4P78363 CALM3-209ENST00000597743 577 ntTSL 4 BASIC23.31■■□□□ 1.32
ABCA4P78363 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC23.31■■□□□ 1.32
ABCA4P78363 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
ABCA4P78363 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
ABCA4P78363 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC23.3■■□□□ 1.32
ABCA4P78363 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
ABCA4P78363 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC23.3■■□□□ 1.32
ABCA4P78363 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC23.29■■□□□ 1.32
ABCA4P78363 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
ABCA4P78363 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC23.29■■□□□ 1.32
ABCA4P78363 DUX4L29-201ENST00000425409 679 ntBASIC23.28■■□□□ 1.32
ABCA4P78363 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC23.28■■□□□ 1.32
ABCA4P78363 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
ABCA4P78363 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC23.28■■□□□ 1.32
ABCA4P78363 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
ABCA4P78363 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
ABCA4P78363 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC23.26■■□□□ 1.31
ABCA4P78363 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
ABCA4P78363 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms