Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC29.8■■■□□ 2.36
ABCA4P78363 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC29.56■■■□□ 2.32
ABCA4P78363 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC29.15■■■□□ 2.26
ABCA4P78363 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
ABCA4P78363 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC28.84■■■□□ 2.21
ABCA4P78363 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC28.78■■■□□ 2.2
ABCA4P78363 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
ABCA4P78363 AL356512.1-201ENST00000607453 1739 ntBASIC28.62■■■□□ 2.17
ABCA4P78363 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC28.25■■■□□ 2.11
ABCA4P78363 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC28.11■■■□□ 2.09
ABCA4P78363 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC28.1■■■□□ 2.09
ABCA4P78363 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC28.04■■■□□ 2.08
ABCA4P78363 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC27.95■■■□□ 2.07
ABCA4P78363 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC27.94■■■□□ 2.06
ABCA4P78363 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC27.93■■■□□ 2.06
ABCA4P78363 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC27.93■■■□□ 2.06
ABCA4P78363 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
ABCA4P78363 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
ABCA4P78363 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC27.78■■■□□ 2.04
ABCA4P78363 HES6-203ENST00000409160 1600 ntTSL 2 BASIC27.48■■□□□ 1.99
ABCA4P78363 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC27.41■■□□□ 1.98
ABCA4P78363 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC27.37■■□□□ 1.97
ABCA4P78363 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
ABCA4P78363 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
ABCA4P78363 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
ABCA4P78363 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC27.24■■□□□ 1.95
ABCA4P78363 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
ABCA4P78363 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC27.23■■□□□ 1.95
ABCA4P78363 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC27.2■■□□□ 1.95
ABCA4P78363 INO80B-203ENST00000409917 796 ntTSL 2 BASIC27.13■■□□□ 1.93
ABCA4P78363 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
ABCA4P78363 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
ABCA4P78363 AC006077.2-201ENST00000623591 457 ntBASIC26.95■■□□□ 1.9
ABCA4P78363 ZNRF2P1-201ENST00000441407 443 ntBASIC26.84■■□□□ 1.89
ABCA4P78363 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC26.76■■□□□ 1.87
ABCA4P78363 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC26.72■■□□□ 1.87
ABCA4P78363 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
ABCA4P78363 AC015813.7-201ENST00000623294 581 ntBASIC26.7■■□□□ 1.86
ABCA4P78363 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC26.6■■□□□ 1.85
ABCA4P78363 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
ABCA4P78363 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
ABCA4P78363 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
ABCA4P78363 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
ABCA4P78363 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
ABCA4P78363 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
ABCA4P78363 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
ABCA4P78363 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC26.32■■□□□ 1.8
ABCA4P78363 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
ABCA4P78363 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC26.24■■□□□ 1.79
ABCA4P78363 AP002365.1-201ENST00000603448 772 ntBASIC26.22■■□□□ 1.79
ABCA4P78363 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC26.12■■□□□ 1.77
ABCA4P78363 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC26.1■■□□□ 1.77
ABCA4P78363 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
ABCA4P78363 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC26.05■■□□□ 1.76
ABCA4P78363 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
ABCA4P78363 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC26.01■■□□□ 1.75
ABCA4P78363 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC26■■□□□ 1.75
ABCA4P78363 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC25.96■■□□□ 1.75
ABCA4P78363 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
ABCA4P78363 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC25.94■■□□□ 1.74
ABCA4P78363 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC25.93■■□□□ 1.74
ABCA4P78363 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC25.93■■□□□ 1.74
ABCA4P78363 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
ABCA4P78363 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
ABCA4P78363 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
ABCA4P78363 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC25.85■■□□□ 1.73
ABCA4P78363 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC25.85■■□□□ 1.73
ABCA4P78363 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
ABCA4P78363 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
ABCA4P78363 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
ABCA4P78363 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC25.84■■□□□ 1.73
ABCA4P78363 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC25.83■■□□□ 1.72
ABCA4P78363 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC25.8■■□□□ 1.72
ABCA4P78363 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
ABCA4P78363 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
ABCA4P78363 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
ABCA4P78363 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
ABCA4P78363 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
ABCA4P78363 DYNLL1-208ENST00000550178 581 ntBASIC25.67■■□□□ 1.7
ABCA4P78363 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
ABCA4P78363 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC25.65■■□□□ 1.7
ABCA4P78363 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC25.63■■□□□ 1.69
ABCA4P78363 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC25.62■■□□□ 1.69
ABCA4P78363 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
ABCA4P78363 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
ABCA4P78363 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC25.58■■□□□ 1.69
ABCA4P78363 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC25.57■■□□□ 1.68
ABCA4P78363 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
ABCA4P78363 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
ABCA4P78363 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC25.56■■□□□ 1.68
ABCA4P78363 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC25.54■■□□□ 1.68
ABCA4P78363 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC25.53■■□□□ 1.68
ABCA4P78363 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC25.45■■□□□ 1.66
ABCA4P78363 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC25.45■■□□□ 1.66
ABCA4P78363 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
ABCA4P78363 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
ABCA4P78363 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
ABCA4P78363 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC25.4■■□□□ 1.66
ABCA4P78363 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC25.38■■□□□ 1.65
ABCA4P78363 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 10 ms