RNA–Protein interactions for RNA: ENST00000542896.5

PDCD2-209, Transcript of programmed cell death 2, humanhuman

TSL 2 BASIC

Gene PDCD2, Length 1,082 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDCD2-209ENST00000542896 NISCHQ9Y2I1 1504 aa65.03■■■■■ 8
PDCD2-209ENST00000542896 ABCC9O60706 1549 aa58.5■■■■■ 6.96
PDCD2-209ENST00000542896 CCDC180Q9P1Z9 1646 aa58.3■■■■■ 6.92
PDCD2-209ENST00000542896 RB1CC1Q8TDY2 1594 aa55.61■■■■■ 6.49
PDCD2-209ENST00000542896 NACADO15069 1562 aa55.2■■■■■ 6.43
PDCD2-209ENST00000542896 DCAF8L2P0C7V8 631 aa55.07■■■■■ 6.41
PDCD2-209ENST00000542896 DNAJC5BQ9UF47 199 aa54.92■■■■■ 6.38
PDCD2-209ENST00000542896 PABPN1Q86U42 306 aaKnown RBP eCLIP54.5■■■■■ 6.32
PDCD2-209ENST00000542896 MYO15BQ96JP2 1530 aa54.41■■■■■ 6.3
PDCD2-209ENST00000542896 UNC13AQ9UPW8 1703 aa54.19■■■■■ 6.27
PDCD2-209ENST00000542896 BICRAQ9NZM4 1560 aa53.93■■■■■ 6.22
PDCD2-209ENST00000542896 ZCCHC6Q5VYS8 1495 aaKnown RBP53.88■■■■■ 6.22
PDCD2-209ENST00000542896 DCAF1Q9Y4B6 1507 aa53.69■■■■■ 6.19
PDCD2-209ENST00000542896 SHROOM4Q9ULL8 1493 aa53.26■■■■■ 6.12
PDCD2-209ENST00000542896 SCRIBQ14160 1630 aa53.19■■■■■ 6.11
PDCD2-209ENST00000542896 CC2D2AQ9P2K1 1620 aa52.77■■■■■ 6.04
PDCD2-209ENST00000542896 CECR2Q9BXF3 1484 aa52.7■■■■■ 6.03
PDCD2-209ENST00000542896 EIF4G1Q04637 1599 aaKnown RBP52.66■■■■■ 6.02
PDCD2-209ENST00000542896 NCAPD3P42695 1498 aa50.99■■■■■ 5.75
PDCD2-209ENST00000542896 ATAD2BQ9ULI0 1458 aa50.84■■■■■ 5.73
PDCD2-209ENST00000542896 SMARCA4P51532 1647 aa50.71■■■■■ 5.71
PDCD2-209ENST00000542896 SMARCA2P51531 1590 aa50.67■■■■■ 5.7
PDCD2-209ENST00000542896 HMGXB3Q12766 1538 aa50.57■■■■■ 5.69
PDCD2-209ENST00000542896 ERCC6Q03468 1493 aa50.54■■■■■ 5.68
PDCD2-209ENST00000542896 DNAJC5Q9H3Z4 198 aa50.5■■■■■ 5.67
PDCD2-209ENST00000542896 BAZ1AQ9NRL2 1556 aaPredicted RBP50.5■■■■■ 5.67
PDCD2-209ENST00000542896 CUX2O14529 1486 aa50.43■■■■■ 5.66
PDCD2-209ENST00000542896 BAZ1BQ9UIG0 1483 aaKnown RBP50.35■■■■■ 5.65
PDCD2-209ENST00000542896 PEG3Q9GZU2 1588 aa50.21■■■■■ 5.63
PDCD2-209ENST00000542896 NESP48681 1621 aa50.2■■■■■ 5.63
PDCD2-209ENST00000542896 MROH2BQ7Z745 1585 aa50.11■■■■■ 5.61
PDCD2-209ENST00000542896 LAMC3Q9Y6N6 1575 aa49.83■■■■■ 5.57
PDCD2-209ENST00000542896 THOC2Q8NI27 1593 aaKnown RBP49.65■■■■■ 5.54
PDCD2-209ENST00000542896 PDS5BQ9NTI5 1447 aa49.61■■■■■ 5.53
PDCD2-209ENST00000542896 KIF21AQ7Z4S6 1674 aa49.47■■■■■ 5.51
PDCD2-209ENST00000542896 CADPSQ9ULU8 1353 aa49.47■■■■■ 5.51
PDCD2-209ENST00000542896 WIZO95785 1651 aa49.46■■■■■ 5.51
PDCD2-209ENST00000542896 MRC2Q9UBG0 1479 aa49.16■■■■■ 5.46
PDCD2-209ENST00000542896 RSF1Q96T23 1441 aaPredicted RBP49.08■■■■■ 5.45
PDCD2-209ENST00000542896 WDR62O43379 1518 aa49■■■■■ 5.43
PDCD2-209ENST00000542896 CEP164Q9UPV0 1460 aa48.96■■■■■ 5.43
PDCD2-209ENST00000542896 FANCD2Q9BXW9 1451 aa48.9■■■■■ 5.42
PDCD2-209ENST00000542896 TOP2AP11388 1531 aaKnown RBP48.88■■■■■ 5.41
PDCD2-209ENST00000542896 CFTRP13569 1480 aa48.86■■■■■ 5.41
PDCD2-209ENST00000542896 URB2Q14146 1524 aaKnown RBP48.48■■■■■ 5.35
PDCD2-209ENST00000542896 CCDC88BA6NC98 1476 aa48.35■■■■■ 5.33
PDCD2-209ENST00000542896 TRIM41Q8WV44 630 aa48.34■■■■■ 5.33
PDCD2-209ENST00000542896 PRDM2Q13029 1718 aa48.21■■■■■ 5.31
PDCD2-209ENST00000542896 OSCARQ8IYS5 282 aa48.18■■■■■ 5.3
PDCD2-209ENST00000542896 IFT140Q96RY7 1462 aa47.99■■■■■ 5.27
PDCD2-209ENST00000542896 TOPBP1Q92547 1522 aa47.95■■■■■ 5.27
PDCD2-209ENST00000542896 ZNF608Q9ULD9 1512 aaPredicted RBP47.9■■■■■ 5.26
PDCD2-209ENST00000542896 ABCC8Q09428 1581 aa47.86■■■■■ 5.25
PDCD2-209ENST00000542896 DNMBPQ6XZF7 1577 aa47.75■■■■■ 5.23
PDCD2-209ENST00000542896 EIF4G3O43432 1585 aaKnown RBP47.58■■■■■ 5.21
PDCD2-209ENST00000542896 AQRO60306 1485 aaKnown RBP eCLIP47.48■■■■■ 5.199e-7■■■■■ 36.8
PDCD2-209ENST00000542896 TARBP1Q13395 1621 aaKnown RBP47.46■■■■■ 5.19
PDCD2-209ENST00000542896 POLA1P09884 1462 aaPredicted RBP47.46■■■■■ 5.19
PDCD2-209ENST00000542896 RIMBP3CA6NJZ7 1639 aa47.45■■■■■ 5.19
PDCD2-209ENST00000542896 RIMBP3BA6NNM3 1639 aa47.45■■■■■ 5.19
PDCD2-209ENST00000542896 RIMBP3Q9UFD9 1639 aa47.45■■■■■ 5.19
PDCD2-209ENST00000542896 ARHGEF11O15085 1522 aa47.34■■■■■ 5.17
PDCD2-209ENST00000542896 RAD54L2Q9Y4B4 1467 aa47.3■■■■■ 5.16
PDCD2-209ENST00000542896 SOGA1O94964 1423 aa47.28■■■■■ 5.16
PDCD2-209ENST00000542896 FBLN2P98095 1184 aa47.27■■■■■ 5.16
PDCD2-209ENST00000542896 TDRD9Q8NDG6 1382 aaKnown RBP47.21■■■■■ 5.15
PDCD2-209ENST00000542896 CHD1O14646 1710 aa47.19■■■■■ 5.15
PDCD2-209ENST00000542896 FGD5Q6ZNL6 1462 aa47.16■■■■■ 5.14
PDCD2-209ENST00000542896 CUX1P39880 1505 aa47.08■■■■■ 5.13
PDCD2-209ENST00000542896 CYB5RLQ6IPT4 315 aa47.07■■■■■ 5.13
PDCD2-209ENST00000542896 WDR97A6NE52 1622 aa47■■■■■ 5.11
PDCD2-209ENST00000542896 SNAPC4Q5SXM2 1469 aa46.99■■■■■ 5.11
PDCD2-209ENST00000542896 SUPT5HO00267 1087 aaKnown RBP46.95■■■■■ 5.11
PDCD2-209ENST00000542896 CHMP7Q8WUX9 453 aaPredicted RBP46.89■■■■■ 5.1
PDCD2-209ENST00000542896 ARAP1Q96P48 1450 aa46.87■■■■■ 5.09
PDCD2-209ENST00000542896 GRIN2BQ13224 1484 aa46.86■■■■■ 5.09
PDCD2-209ENST00000542896 MAGI1Q96QZ7 1491 aaPredicted RBP46.85■■■■■ 5.09
PDCD2-209ENST00000542896 SYNJ1O43426 1573 aa46.72■■■■■ 5.07
PDCD2-209ENST00000542896 CLASP1Q7Z460 1538 aa46.71■■■■■ 5.07
PDCD2-209ENST00000542896 SYNJ2O15056 1496 aa46.7■■■■■ 5.07
PDCD2-209ENST00000542896 GAPVD1Q14C86 1478 aa46.68■■■■■ 5.06
PDCD2-209ENST00000542896 ABCA10Q8WWZ4 1543 aa46.61■■■■■ 5.05
PDCD2-209ENST00000542896 TRHP20396 242 aaPredicted RBP46.61■■■■■ 5.05
PDCD2-209ENST00000542896 PBRM1Q86U86 1689 aa46.56■■■■■ 5.04
PDCD2-209ENST00000542896 ABCA5Q8WWZ7 1642 aa46.49■■■■■ 5.03
PDCD2-209ENST00000542896 WRNQ14191 1432 aaPredicted RBP eCLIP46.45■■■■■ 5.03
PDCD2-209ENST00000542896 TOP2BQ02880 1626 aa46.28■■■■■ 5
PDCD2-209ENST00000542896 BIVM-ERCC5R4GMW8 1640 aa46.26■■■■■ 5
PDCD2-209ENST00000542896 GRIN2AQ12879 1464 aa46.25■■■■■ 4.99
PDCD2-209ENST00000542896 ADAMTS12P58397 1594 aa46.17■■■■■ 4.98
PDCD2-209ENST00000542896 FHAD1B1AJZ9 1412 aa46.11■■■■■ 4.97
PDCD2-209ENST00000542896 NUP160Q12769 1436 aa46.09■■■■■ 4.97
PDCD2-209ENST00000542896 CEP170Q5SW79 1584 aa46.05■■■■■ 4.96
PDCD2-209ENST00000542896 ERICH3Q5RHP9 1530 aa46.02■■■■■ 4.96
PDCD2-209ENST00000542896 ERCC6L2Q5T890 1561 aa45.98■■■■■ 4.95
PDCD2-209ENST00000542896 SHROOM2Q13796 1616 aa45.81■■■■■ 4.92
PDCD2-209ENST00000542896 PRG4Q92954 1404 aaPredicted RBP45.69■■■■■ 4.91
PDCD2-209ENST00000542896 JPH4Q96JJ6 628 aa45.67■■■■■ 4.9
PDCD2-209ENST00000542896 RUSC2Q8N2Y8 1516 aa45.51■■■■■ 4.88
PDCD2-209ENST00000542896 KIF27Q86VH2 1401 aa45.47■■■■■ 4.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms