Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.117e-9■□□□□ 8.9
SMNDC1O75940 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.786e-9■□□□□ 8.9
SMNDC1O75940 CDC20-201ENST00000310955 1675 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.176e-9■□□□□ 8.9
SMNDC1O75940 CDC20-204ENST00000482046 422 ntTSL 29.58□□□□□ -0.886e-9■□□□□ 8.9
SMNDC1O75940 SDCCAG3-207ENST00000461693 869 ntTSL 210.51□□□□□ -0.731e-8■□□□□ 8.9
SMNDC1O75940 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC26.63■■□□□ 1.852e-7■□□□□ 8.9
SMNDC1O75940 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.612e-7■□□□□ 8.9
SMNDC1O75940 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC24.88■■□□□ 1.572e-7■□□□□ 8.9
SMNDC1O75940 MBOAT7-206ENST00000437868 2033 ntTSL 1 (best)21.84■■□□□ 1.092e-7■□□□□ 8.9
SMNDC1O75940 MBOAT7-207ENST00000449249 707 ntTSL 518.26■□□□□ 0.512e-7■□□□□ 8.9
SMNDC1O75940 MBOAT7-212ENST00000494142 3039 ntTSL 1 (best)17.88■□□□□ 0.452e-7■□□□□ 8.9
SMNDC1O75940 SLC22A31-204ENST00000568161 651 ntTSL 313.2□□□□□ -0.35e-10■□□□□ 8.9
SMNDC1O75940 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.61e-7■□□□□ 8.9
SMNDC1O75940 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.051e-7■□□□□ 8.9
SMNDC1O75940 SF1-211ENST00000448404 2778 ntTSL 1 (best)14.97□□□□□ -0.011e-7■□□□□ 8.9
SMNDC1O75940 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC14.96□□□□□ -0.011e-7■□□□□ 8.9
SMNDC1O75940 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC14.96□□□□□ -0.021e-7■□□□□ 8.9
SMNDC1O75940 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.35□□□□□ -0.111e-7■□□□□ 8.9
SMNDC1O75940 SF1-204ENST00000377390 3470 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.321e-7■□□□□ 8.9
SMNDC1O75940 SF1-216ENST00000486867 875 ntTSL 311.69□□□□□ -0.541e-7■□□□□ 8.9
SMNDC1O75940 SF1-218ENST00000489544 584 ntTSL 27.37□□□□□ -1.231e-7■□□□□ 8.9
SMNDC1O75940 ACADVL-230ENST00000582379 833 ntTSL 39.12□□□□□ -0.951e-6■□□□□ 8.9
SMNDC1O75940 HNRNPM-213ENST00000600092 1086 ntTSL 216.69■□□□□ 0.264e-8■□□□□ 8.9
SMNDC1O75940 SLC6A8-209ENST00000476466 470 ntTSL 312.64□□□□□ -0.392e-9■□□□□ 8.8
SMNDC1O75940 MAN2A2-228ENST00000561047 1057 ntTSL 516.14■□□□□ 0.173e-7■□□□□ 8.8
SMNDC1O75940 MAN2A2-213ENST00000559374 851 ntTSL 515□□□□□ -0.013e-7■□□□□ 8.8
SMNDC1O75940 MAN2A2-202ENST00000557865 2671 ntTSL 214.72□□□□□ -0.053e-7■□□□□ 8.8
SMNDC1O75940 MAN2A2-201ENST00000360468 6268 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.543e-7■□□□□ 8.8
SMNDC1O75940 MAN2A2-230ENST00000561448 1443 ntTSL 210.24□□□□□ -0.773e-7■□□□□ 8.8
SMNDC1O75940 MVK-205ENST00000537237 1296 ntTSL 525.68■■□□□ 1.76e-6■□□□□ 8.8
SMNDC1O75940 MVK-208ENST00000539696 608 ntTSL 5 BASIC25.09■■□□□ 1.616e-6■□□□□ 8.8
SMNDC1O75940 MVK-203ENST00000447878 1644 ntTSL 223.81■■□□□ 1.46e-6■□□□□ 8.8
SMNDC1O75940 MVK-211ENST00000545774 702 ntTSL 323.42■■□□□ 1.346e-6■□□□□ 8.8
SMNDC1O75940 TRIM28-204ENST00000594806 861 ntTSL 522.95■■□□□ 1.261e-13■□□□□ 8.8
SMNDC1O75940 COL18A1-207ENST00000473212 2515 ntTSL 222.18■■□□□ 1.146e-6■□□□□ 8.8
SMNDC1O75940 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.76■■□□□ 1.076e-6■□□□□ 8.8
SMNDC1O75940 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC21.53■■□□□ 1.046e-6■□□□□ 8.8
SMNDC1O75940 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.74■□□□□ 0.916e-6■□□□□ 8.8
SMNDC1O75940 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.65■□□□□ 0.96e-6■□□□□ 8.8
SMNDC1O75940 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.676e-6■□□□□ 8.8
SMNDC1O75940 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.626e-6■□□□□ 8.8
SMNDC1O75940 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.75■□□□□ 0.596e-6■□□□□ 8.8
SMNDC1O75940 GPI-212ENST00000589985 1516 ntTSL 318.66■□□□□ 0.583e-7■□□□□ 8.8
SMNDC1O75940 MVK-212ENST00000546277 886 ntTSL 518.09■□□□□ 0.496e-6■□□□□ 8.8
SMNDC1O75940 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.466e-6■□□□□ 8.8
SMNDC1O75940 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC17.51■□□□□ 0.396e-6■□□□□ 8.8
SMNDC1O75940 TCEA1-210ENST00000522397 852 ntTSL 317.43■□□□□ 0.386e-6■□□□□ 8.8
SMNDC1O75940 CBX8-203ENST00000427800 665 ntTSL 217.36■□□□□ 0.376e-6■□□□□ 8.8
SMNDC1O75940 CBX8-204ENST00000485449 581 ntTSL 317.34■□□□□ 0.376e-6■□□□□ 8.8
SMNDC1O75940 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.32■□□□□ 0.366e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-231ENST00000557433 1904 ntTSL 1 (best)17.25■□□□□ 0.356e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.25■□□□□ 0.356e-6■□□□□ 8.8
SMNDC1O75940 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.286e-6■□□□□ 8.8
SMNDC1O75940 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.266e-6■□□□□ 8.8
SMNDC1O75940 BSG-205ENST00000571735 2155 ntTSL 216.36■□□□□ 0.216e-6■□□□□ 8.8
SMNDC1O75940 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.26e-6■□□□□ 8.8
SMNDC1O75940 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC16.24■□□□□ 0.196e-6■□□□□ 8.8
SMNDC1O75940 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.86■□□□□ 0.136e-6■□□□□ 8.8
SMNDC1O75940 MVK-216ENST00000636996 1725 ntTSL 515.8■□□□□ 0.126e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC15.77■□□□□ 0.126e-6■□□□□ 8.8
SMNDC1O75940 ARVCF-209ENST00000487793 863 ntTSL 215.74■□□□□ 0.116e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-226ENST00000556825 2215 ntTSL 1 (best)15.71■□□□□ 0.116e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.65■□□□□ 0.16e-6■□□□□ 8.8
SMNDC1O75940 CBX8-202ENST00000413392 777 ntTSL 315.34■□□□□ 0.056e-6■□□□□ 8.8
SMNDC1O75940 MVK-206ENST00000539335 834 ntTSL 315.19■□□□□ 0.026e-6■□□□□ 8.8
SMNDC1O75940 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.96□□□□□ -0.026e-6■□□□□ 8.8
SMNDC1O75940 MVK-215ENST00000636529 1509 ntTSL 514.55□□□□□ -0.086e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-205ENST00000422854 582 ntTSL 414.29□□□□□ -0.126e-6■□□□□ 8.8
SMNDC1O75940 MVK-214ENST00000629016 1591 ntTSL 5 BASIC14.2□□□□□ -0.146e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-222ENST00000555774 2311 ntTSL 1 (best)13.92□□□□□ -0.186e-6■□□□□ 8.8
SMNDC1O75940 GPI-204ENST00000586392 1706 ntTSL 213.85□□□□□ -0.193e-7■□□□□ 8.8
SMNDC1O75940 TRIM28-203ENST00000593582 533 ntTSL 313.73□□□□□ -0.211e-13■□□□□ 8.8
SMNDC1O75940 MVK-204ENST00000535044 548 ntTSL 413.59□□□□□ -0.236e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-201ENST00000328923 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.276e-6■□□□□ 8.8
SMNDC1O75940 TCEA1-207ENST00000521086 2966 ntTSL 1 (best)13.34□□□□□ -0.276e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-207ENST00000553837 2152 ntTSL 513.17□□□□□ -0.36e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-205ENST00000553474 1765 ntTSL 2 BASIC13.09□□□□□ -0.316e-6■□□□□ 8.8
SMNDC1O75940 TSC1-206ENST00000490179 681 ntTSL 313.07□□□□□ -0.326e-6■□□□□ 8.8
SMNDC1O75940 MVK-217ENST00000639206 367 ntTSL 5 BASIC13.02□□□□□ -0.336e-6■□□□□ 8.8
SMNDC1O75940 TSC1-205ENST00000475903 820 ntTSL 413.01□□□□□ -0.336e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-229ENST00000557348 1659 ntTSL 213.01□□□□□ -0.336e-6■□□□□ 8.8
SMNDC1O75940 MVK-213ENST00000625889 2591 ntTSL 1 (best) BASIC12.91□□□□□ -0.346e-6■□□□□ 8.8
SMNDC1O75940 KBTBD2-207ENST00000485611 537 ntTSL 412.86□□□□□ -0.356e-6■□□□□ 8.8
SMNDC1O75940 ARVCF-210ENST00000492625 631 ntTSL 312.84□□□□□ -0.356e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC12.79□□□□□ -0.366e-6■□□□□ 8.8
SMNDC1O75940 MARK3-201ENST00000216288 2911 ntTSL 1 (best) BASIC12.72□□□□□ -0.376e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-217ENST00000555116 1885 ntTSL 212.65□□□□□ -0.386e-6■□□□□ 8.8
SMNDC1O75940 TRIM28-211ENST00000597968 504 ntTSL 212.26□□□□□ -0.451e-13■□□□□ 8.8
SMNDC1O75940 SHMT2-212ENST00000554467 3416 ntTSL 212.23□□□□□ -0.456e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-204ENST00000420829 582 ntTSL 412.13□□□□□ -0.476e-6■□□□□ 8.8
SMNDC1O75940 MVK-202ENST00000392727 1770 ntTSL 2 BASIC11.78□□□□□ -0.526e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-233ENST00000557529 1369 ntTSL 211.53□□□□□ -0.566e-6■□□□□ 8.8
SMNDC1O75940 SDE2-201ENST00000272091 3975 ntAPPRIS P1 TSL 1 (best) BASIC11.35□□□□□ -0.596e-6■□□□□ 8.8
SMNDC1O75940 FIGNL1-208ENST00000436590 559 ntTSL 410.96□□□□□ -0.656e-6■□□□□ 8.8
SMNDC1O75940 TSC1-207ENST00000493467 2219 ntTSL 1 (best)10.08□□□□□ -0.86e-6■□□□□ 8.8
SMNDC1O75940 SHMT2-220ENST00000555634 964 ntTSL 59.93□□□□□ -0.826e-6■□□□□ 8.8
SMNDC1O75940 MARK3-223ENST00000561071 746 ntTSL 39.81□□□□□ -0.846e-6■□□□□ 8.8
SMNDC1O75940 MARK3-207ENST00000553942 2298 ntTSL 1 (best) BASIC9.67□□□□□ -0.866e-6■□□□□ 8.8
SMNDC1O75940 MARK3-226ENST00000561314 724 ntTSL 39.6□□□□□ -0.876e-6■□□□□ 8.8
SMNDC1O75940 TSC1-208ENST00000545250 8310 ntTSL 5 BASIC9.53□□□□□ -0.886e-6■□□□□ 8.8
Retrieved 100 of 11,362 protein–RNA pairs in 296.5 ms