RNA–Protein interactions for RNA: ENST00000486867.1

SF1-216, Transcript of splicing factor 1, humanhuman

TSL 3

Gene SF1, Length 875 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-216ENST00000486867 NISCHQ9Y2I1 1504 aa32.23■■■□□ 2.75
SF1-216ENST00000486867 CCDC180Q9P1Z9 1646 aa28.76■■■□□ 2.19
SF1-216ENST00000486867 ABCC9O60706 1549 aa27.84■■■□□ 2.05
SF1-216ENST00000486867 NACADO15069 1562 aa26.94■■□□□ 1.9
SF1-216ENST00000486867 RB1CC1Q8TDY2 1594 aa26.93■■□□□ 1.9
SF1-216ENST00000486867 ZCCHC6Q5VYS8 1495 aaKnown RBP26.88■■□□□ 1.89
SF1-216ENST00000486867 MYO15BQ96JP2 1530 aa26.88■■□□□ 1.89
SF1-216ENST00000486867 DCAF1Q9Y4B6 1507 aa26.77■■□□□ 1.88
SF1-216ENST00000486867 DCAF8L2P0C7V8 631 aa26.57■■□□□ 1.84
SF1-216ENST00000486867 UNC13AQ9UPW8 1703 aa26.46■■□□□ 1.83
SF1-216ENST00000486867 BICRAQ9NZM4 1560 aa26.16■■□□□ 1.78
SF1-216ENST00000486867 SCRIBQ14160 1630 aa26.06■■□□□ 1.76
SF1-216ENST00000486867 SHROOM4Q9ULL8 1493 aa25.94■■□□□ 1.74
SF1-216ENST00000486867 PABPN1Q86U42 306 aaKnown RBP eCLIP25.93■■□□□ 1.742e-6■□□□□ 8.9
SF1-216ENST00000486867 DNAJC5BQ9UF47 199 aa25.49■■□□□ 1.67
SF1-216ENST00000486867 EIF4G1Q04637 1599 aaKnown RBP25.41■■□□□ 1.66
SF1-216ENST00000486867 CC2D2AQ9P2K1 1620 aa25.29■■□□□ 1.64
SF1-216ENST00000486867 CECR2Q9BXF3 1484 aa25.04■■□□□ 1.6
SF1-216ENST00000486867 SMARCA4P51532 1647 aa25.02■■□□□ 1.6
SF1-216ENST00000486867 BAZ1AQ9NRL2 1556 aaPredicted RBP24.98■■□□□ 1.59
SF1-216ENST00000486867 PEG3Q9GZU2 1588 aa24.85■■□□□ 1.57
SF1-216ENST00000486867 NCAPD3P42695 1498 aa24.83■■□□□ 1.57
SF1-216ENST00000486867 SMARCA2P51531 1590 aa24.83■■□□□ 1.57
SF1-216ENST00000486867 ATAD2BQ9ULI0 1458 aa24.83■■□□□ 1.56
SF1-216ENST00000486867 MROH2BQ7Z745 1585 aa24.81■■□□□ 1.56
SF1-216ENST00000486867 HMGXB3Q12766 1538 aa24.76■■□□□ 1.55
SF1-216ENST00000486867 BAZ1BQ9UIG0 1483 aaKnown RBP24.58■■□□□ 1.53
SF1-216ENST00000486867 WIZO95785 1651 aa24.56■■□□□ 1.52
SF1-216ENST00000486867 RSF1Q96T23 1441 aaPredicted RBP24.53■■□□□ 1.52
SF1-216ENST00000486867 TOP2AP11388 1531 aaKnown RBP24.32■■□□□ 1.48
SF1-216ENST00000486867 LAMC3Q9Y6N6 1575 aa24.2■■□□□ 1.46
SF1-216ENST00000486867 NESP48681 1621 aa24.14■■□□□ 1.46
SF1-216ENST00000486867 CADPSQ9ULU8 1353 aa24.04■■□□□ 1.44
SF1-216ENST00000486867 CCDC88BA6NC98 1476 aa23.98■■□□□ 1.43
SF1-216ENST00000486867 CFTRP13569 1480 aa23.97■■□□□ 1.43
SF1-216ENST00000486867 PRDM2Q13029 1718 aa23.97■■□□□ 1.43
SF1-216ENST00000486867 KIF21AQ7Z4S6 1674 aa23.97■■□□□ 1.43
SF1-216ENST00000486867 ERCC6Q03468 1493 aa23.96■■□□□ 1.43
SF1-216ENST00000486867 PDS5BQ9NTI5 1447 aa23.93■■□□□ 1.42
SF1-216ENST00000486867 THOC2Q8NI27 1593 aaKnown RBP23.89■■□□□ 1.41
SF1-216ENST00000486867 CUX2O14529 1486 aa23.82■■□□□ 1.4
SF1-216ENST00000486867 FANCD2Q9BXW9 1451 aa23.77■■□□□ 1.4
SF1-216ENST00000486867 CEP164Q9UPV0 1460 aa23.75■■□□□ 1.39
SF1-216ENST00000486867 SUPT5HO00267 1087 aaKnown RBP23.72■■□□□ 1.39
SF1-216ENST00000486867 MRC2Q9UBG0 1479 aa23.71■■□□□ 1.39
SF1-216ENST00000486867 WDR62O43379 1518 aa23.69■■□□□ 1.38
SF1-216ENST00000486867 URB2Q14146 1524 aaKnown RBP23.56■■□□□ 1.36
SF1-216ENST00000486867 ABCC8Q09428 1581 aa23.46■■□□□ 1.35
SF1-216ENST00000486867 DNMBPQ6XZF7 1577 aa23.44■■□□□ 1.34
SF1-216ENST00000486867 TOPBP1Q92547 1522 aa23.43■■□□□ 1.34
SF1-216ENST00000486867 CUX1P39880 1505 aa23.28■■□□□ 1.32
SF1-216ENST00000486867 IFT140Q96RY7 1462 aa23.25■■□□□ 1.31
SF1-216ENST00000486867 TARBP1Q13395 1621 aaKnown RBP23.24■■□□□ 1.31
SF1-216ENST00000486867 POLA1P09884 1462 aaPredicted RBP23.23■■□□□ 1.31
SF1-216ENST00000486867 BIVM-ERCC5R4GMW8 1640 aa23.18■■□□□ 1.3
SF1-216ENST00000486867 FGD5Q6ZNL6 1462 aa23.16■■□□□ 1.3
SF1-216ENST00000486867 TOP2BQ02880 1626 aa23.14■■□□□ 1.29
SF1-216ENST00000486867 WDR97A6NE52 1622 aa23.12■■□□□ 1.29
SF1-216ENST00000486867 ZNF608Q9ULD9 1512 aaPredicted RBP23.12■■□□□ 1.29
SF1-216ENST00000486867 EIF4G3O43432 1585 aaKnown RBP23.1■■□□□ 1.29
SF1-216ENST00000486867 SYNJ1O43426 1573 aa23.1■■□□□ 1.29
SF1-216ENST00000486867 WRNQ14191 1432 aaPredicted RBP eCLIP23.09■■□□□ 1.29
SF1-216ENST00000486867 SOGA1O94964 1423 aa23.07■■□□□ 1.28
SF1-216ENST00000486867 RAD54L2Q9Y4B4 1467 aa23.06■■□□□ 1.28
SF1-216ENST00000486867 ABCA10Q8WWZ4 1543 aa22.99■■□□□ 1.27
SF1-216ENST00000486867 AQRO60306 1485 aaKnown RBP eCLIP22.96■■□□□ 1.278e-8■■■■■ 58.7
SF1-216ENST00000486867 ABCA5Q8WWZ7 1642 aa22.94■■□□□ 1.26
SF1-216ENST00000486867 DNAJC5Q9H3Z4 198 aa22.94■■□□□ 1.26
SF1-216ENST00000486867 PBRM1Q86U86 1689 aa22.9■■□□□ 1.26
SF1-216ENST00000486867 TDRD9Q8NDG6 1382 aaKnown RBP22.89■■□□□ 1.26
SF1-216ENST00000486867 CHD1O14646 1710 aa22.84■■□□□ 1.25
SF1-216ENST00000486867 GRIN2BQ13224 1484 aa22.84■■□□□ 1.25
SF1-216ENST00000486867 GAPVD1Q14C86 1478 aa22.84■■□□□ 1.25
SF1-216ENST00000486867 MAGI1Q96QZ7 1491 aaPredicted RBP22.81■■□□□ 1.24
SF1-216ENST00000486867 SNAPC4Q5SXM2 1469 aa22.78■■□□□ 1.24
SF1-216ENST00000486867 ERICH3Q5RHP9 1530 aa22.73■■□□□ 1.23
SF1-216ENST00000486867 OSCARQ8IYS5 282 aa22.71■■□□□ 1.23
SF1-216ENST00000486867 SYNJ2O15056 1496 aa22.7■■□□□ 1.22
SF1-216ENST00000486867 ADAMTS12P58397 1594 aa22.68■■□□□ 1.22
SF1-216ENST00000486867 KIF27Q86VH2 1401 aa22.6■■□□□ 1.21
SF1-216ENST00000486867 FHAD1B1AJZ9 1412 aa22.58■■□□□ 1.21
SF1-216ENST00000486867 CLASP1Q7Z460 1538 aa22.58■■□□□ 1.21
SF1-216ENST00000486867 CUL7Q14999 1698 aa22.56■■□□□ 1.2
SF1-216ENST00000486867 GRIN2AQ12879 1464 aa22.56■■□□□ 1.2
SF1-216ENST00000486867 CHMP7Q8WUX9 453 aaPredicted RBP22.54■■□□□ 1.2
SF1-216ENST00000486867 FBLN2P98095 1184 aa22.52■■□□□ 1.2
SF1-216ENST00000486867 IGF1RP08069 1367 aa22.51■■□□□ 1.19
SF1-216ENST00000486867 NUP160Q12769 1436 aa22.49■■□□□ 1.19
SF1-216ENST00000486867 CEP170Q5SW79 1584 aa22.47■■□□□ 1.19
SF1-216ENST00000486867 RIMBP3CA6NJZ7 1639 aa22.47■■□□□ 1.19
SF1-216ENST00000486867 RIMBP3BA6NNM3 1639 aa22.47■■□□□ 1.19
SF1-216ENST00000486867 RIMBP3Q9UFD9 1639 aa22.47■■□□□ 1.19
SF1-216ENST00000486867 TRIM41Q8WV44 630 aa22.45■■□□□ 1.18
SF1-216ENST00000486867 ARHGEF11O15085 1522 aa22.44■■□□□ 1.18
SF1-216ENST00000486867 RUSC2Q8N2Y8 1516 aa22.41■■□□□ 1.18
SF1-216ENST00000486867 SHROOM2Q13796 1616 aa22.39■■□□□ 1.18
SF1-216ENST00000486867 CARMIL1Q5VZK9 1371 aa22.36■■□□□ 1.17
SF1-216ENST00000486867 CHIC1Q5VXU3 224 aa22.28■■□□□ 1.16
SF1-216ENST00000486867 ARAP1Q96P48 1450 aa22.27■■□□□ 1.16
SF1-216ENST00000486867 RAPGEF2Q9Y4G8 1499 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms