RNA–Protein interactions for RNA: ENST00000377390.7

SF1-204, Transcript of splicing factor 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SF1, Length 3,470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-204ENST00000377390 NISCHQ9Y2I1 1504 aa22.51■■□□□ 1.19
SF1-204ENST00000377390 DCAF8L2P0C7V8 631 aa21.41■■□□□ 1.02
SF1-204ENST00000377390 SHROOM4Q9ULL8 1493 aa21.03■□□□□ 0.96
SF1-204ENST00000377390 SUPT5HO00267 1087 aaKnown RBP20.65■□□□□ 0.9
SF1-204ENST00000377390 PCGF6Q9BYE7 350 aa20.21■□□□□ 0.83
SF1-204ENST00000377390 HRCP23327 699 aa20.11■□□□□ 0.81
SF1-204ENST00000377390 PPARGC1BQ86YN6 1023 aaKnown RBP20.1■□□□□ 0.81
SF1-204ENST00000377390 EHMT2Q96KQ7 1210 aa19.99■□□□□ 0.79
SF1-204ENST00000377390 PELP1Q8IZL8 1130 aaKnown RBP19.72■□□□□ 0.75
SF1-204ENST00000377390 CHIC1Q5VXU3 224 aa19.61■□□□□ 0.73
SF1-204ENST00000377390 LOC105371045A0A1W2PR82 267 aa19.51■□□□□ 0.71
SF1-204ENST00000377390 FAM9AQ8IZU1 332 aaPredicted RBP19.43■□□□□ 0.7
SF1-204ENST00000377390 MYO15BQ96JP2 1530 aa19.37■□□□□ 0.69
SF1-204ENST00000377390 SCAF1Q9H7N4 1312 aaKnown RBP19.25■□□□□ 0.67
SF1-204ENST00000377390 TRIM26Q12899 539 aaPredicted RBP19.21■□□□□ 0.67
SF1-204ENST00000377390 ABCC9O60706 1549 aa19.19■□□□□ 0.66
SF1-204ENST00000377390 TTBK1Q5TCY1 1321 aaPredicted RBP19.11■□□□□ 0.65
SF1-204ENST00000377390 ZEB1P37275 1124 aaPredicted RBP19.01■□□□□ 0.63
SF1-204ENST00000377390 MYT1Q01538 1121 aa18.97■□□□□ 0.63
SF1-204ENST00000377390 PABPN1Q86U42 306 aaKnown RBP eCLIP18.91■□□□□ 0.621e-6■□□□□ 9.3
SF1-204ENST00000377390 RANGAP1P46060 587 aaPredicted RBP18.86■□□□□ 0.61
SF1-204ENST00000377390 GTF3C3Q9Y5Q9 886 aa18.83■□□□□ 0.6
SF1-204ENST00000377390 TRIM41Q8WV44 630 aa18.79■□□□□ 0.6
SF1-204ENST00000377390 CCER1Q8TC90 406 aaPredicted RBP18.78■□□□□ 0.6
SF1-204ENST00000377390 DCAF1Q9Y4B6 1507 aa18.78■□□□□ 0.6
SF1-204ENST00000377390 ZCCHC6Q5VYS8 1495 aaKnown RBP18.76■□□□□ 0.59
SF1-204ENST00000377390 NEUROD1Q13562 356 aa18.74■□□□□ 0.59
SF1-204ENST00000377390 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.74■□□□□ 0.59
SF1-204ENST00000377390 YTHDC1Q96MU7 727 aaKnown RBP18.7■□□□□ 0.58
SF1-204ENST00000377390 ACIN1Q9UKV3 1341 aaKnown RBP18.69■□□□□ 0.58
SF1-204ENST00000377390 CENPBP07199 599 aaPredicted RBP18.69■□□□□ 0.58
SF1-204ENST00000377390 SCRIBQ14160 1630 aa18.6■□□□□ 0.57
SF1-204ENST00000377390 DIEXFQ68CQ4 756 aaKnown RBP18.56■□□□□ 0.56
SF1-204ENST00000377390 CCDC180Q9P1Z9 1646 aa18.4■□□□□ 0.54
SF1-204ENST00000377390 UBTFP17480 764 aaKnown RBP18.24■□□□□ 0.51
SF1-204ENST00000377390 CECR2Q9BXF3 1484 aa18.18■□□□□ 0.5
SF1-204ENST00000377390 HNRNPUL2Q1KMD3 747 aaKnown RBP18.1■□□□□ 0.49
SF1-204ENST00000377390 ZNF316A6NFI3 1004 aaPredicted RBP18.08■□□□□ 0.49
SF1-204ENST00000377390 RSF1Q96T23 1441 aaPredicted RBP18.06■□□□□ 0.48
SF1-204ENST00000377390 MIER1Q8N108 512 aa18.04■□□□□ 0.48
SF1-204ENST00000377390 BCL11AQ9H165 835 aa18.04■□□□□ 0.48
SF1-204ENST00000377390 ATP1B4Q9UN42 357 aaPredicted RBP18■□□□□ 0.47
SF1-204ENST00000377390 RB1CC1Q8TDY2 1594 aa17.85■□□□□ 0.45
SF1-204ENST00000377390 ITGAEP38570 1179 aa17.85■□□□□ 0.45
SF1-204ENST00000377390 APLP2Q06481 763 aa17.84■□□□□ 0.45
SF1-204ENST00000377390 BCANQ96GW7 911 aa17.84■□□□□ 0.45
SF1-204ENST00000377390 MROH2BQ7Z745 1585 aa17.82■□□□□ 0.44
SF1-204ENST00000377390 ANP32EQ9BTT0 268 aa17.78■□□□□ 0.44
SF1-204ENST00000377390 CSRNP3Q8WYN3 585 aa17.74■□□□□ 0.43
SF1-204ENST00000377390 WIZO95785 1651 aa17.68■□□□□ 0.42
SF1-204ENST00000377390 P3H3Q8IVL6 736 aa17.66■□□□□ 0.42
SF1-204ENST00000377390 SUPT16HQ9Y5B9 1047 aaKnown RBP17.62■□□□□ 0.41
SF1-204ENST00000377390 ABCC8Q09428 1581 aa17.6■□□□□ 0.41
SF1-204ENST00000377390 ARID3CA6NKF2 412 aa17.6■□□□□ 0.41
SF1-204ENST00000377390 TSHZ2Q9NRE2 1034 aa17.57■□□□□ 0.4
SF1-204ENST00000377390 ERICH6Q7L0X2 663 aa17.56■□□□□ 0.4
SF1-204ENST00000377390 NACADO15069 1562 aa17.54■□□□□ 0.4
SF1-204ENST00000377390 CEP162Q5TB80 1403 aa17.52■□□□□ 0.39
SF1-204ENST00000377390 SOGA1O94964 1423 aa17.51■□□□□ 0.39
SF1-204ENST00000377390 NEFLP07196 543 aa17.49■□□□□ 0.39
SF1-204ENST00000377390 FKBP8Q14318 412 aa17.48■□□□□ 0.39
SF1-204ENST00000377390 CCDC88BA6NC98 1476 aa17.44■□□□□ 0.38
SF1-204ENST00000377390 RUSC2Q8N2Y8 1516 aa17.42■□□□□ 0.38
SF1-204ENST00000377390 KCNH8Q96L42 1107 aa17.38■□□□□ 0.37
SF1-204ENST00000377390 PRKCSHP14314 528 aaPredicted RBP17.38■□□□□ 0.37
SF1-204ENST00000377390 TRIM52Q96A61 297 aa17.33■□□□□ 0.36
SF1-204ENST00000377390 DNAJC5BQ9UF47 199 aa17.32■□□□□ 0.36
SF1-204ENST00000377390 DDX10Q13206 875 aaKnown RBP17.31■□□□□ 0.36
SF1-204ENST00000377390 HIRIP3Q9BW71 556 aaPredicted RBP17.3■□□□□ 0.36
SF1-204ENST00000377390 TNIKQ9UKE5 1360 aa17.29■□□□□ 0.36
SF1-204ENST00000377390 CNGB1Q14028 1251 aaPredicted RBP17.28■□□□□ 0.36
SF1-204ENST00000377390 CLSPNQ9HAW4 1339 aa17.28■□□□□ 0.36
SF1-204ENST00000377390 BAZ1AQ9NRL2 1556 aaPredicted RBP17.27■□□□□ 0.36
SF1-204ENST00000377390 FBLN2P98095 1184 aa17.26■□□□□ 0.35
SF1-204ENST00000377390 RBM19Q9Y4C8 960 aaKnown RBP17.25■□□□□ 0.35
SF1-204ENST00000377390 FAM50AQ14320 339 aaKnown RBP17.23■□□□□ 0.35
SF1-204ENST00000377390 BAZ1BQ9UIG0 1483 aaKnown RBP17.22■□□□□ 0.35
SF1-204ENST00000377390 IRX6P78412 446 aaPredicted RBP17.21■□□□□ 0.35
SF1-204ENST00000377390 WRNQ14191 1432 aaPredicted RBP eCLIP17.21■□□□□ 0.34
SF1-204ENST00000377390 CLIP1P30622 1438 aa17.15■□□□□ 0.34
SF1-204ENST00000377390 NBR1Q14596 966 aa17.12■□□□□ 0.33
SF1-204ENST00000377390 SMARCA4P51532 1647 aa17.1■□□□□ 0.33
SF1-204ENST00000377390 ANP32CO43423 234 aa17.08■□□□□ 0.32
SF1-204ENST00000377390 GOLGA3Q08378 1498 aa17.08■□□□□ 0.32
SF1-204ENST00000377390 CDK11AQ9UQ88 783 aaPredicted RBP17.07■□□□□ 0.32
SF1-204ENST00000377390 ANO8Q9HCE9 1232 aaPredicted RBP17.04■□□□□ 0.32
SF1-204ENST00000377390 KANK4Q5T7N3 995 aaPredicted RBP17.03■□□□□ 0.32
SF1-204ENST00000377390 SIN3AQ96ST3 1273 aa17.03■□□□□ 0.32
SF1-204ENST00000377390 RTN4Q9NQC3 1192 aaKnown RBP17.02■□□□□ 0.32
SF1-204ENST00000377390 CCDC136Q96JN2 1154 aa17.02■□□□□ 0.31
SF1-204ENST00000377390 ATAD2BQ9ULI0 1458 aa17.02■□□□□ 0.31
SF1-204ENST00000377390 DHX57Q6P158 1386 aaKnown RBP17■□□□□ 0.31
SF1-204ENST00000377390 DEKP35659 375 aaKnown RBP17■□□□□ 0.31
SF1-204ENST00000377390 HNRNPUQ00839 825 aaKnown RBP eCLIP17■□□□□ 0.31
SF1-204ENST00000377390 SMARCA2P51531 1590 aa16.98■□□□□ 0.31
SF1-204ENST00000377390 TOP2AP11388 1531 aaKnown RBP16.98■□□□□ 0.31
SF1-204ENST00000377390 MSH5O43196 834 aa16.97■□□□□ 0.31
SF1-204ENST00000377390 CHIC2Q9UKJ5 165 aa16.94■□□□□ 0.3
SF1-204ENST00000377390 EEA1Q15075 1411 aa16.94■□□□□ 0.3
SF1-204ENST00000377390 BICRAQ9NZM4 1560 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms