RNA–Protein interactions for RNA: ENST00000414700.7

SHMT2-202, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 2,006 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-202ENST00000414700 NISCHQ9Y2I1 1504 aa36.08■■■■□ 3.37
SHMT2-202ENST00000414700 CCDC180Q9P1Z9 1646 aa31.63■■■□□ 2.65
SHMT2-202ENST00000414700 ABCC9O60706 1549 aa30.35■■■□□ 2.45
SHMT2-202ENST00000414700 ZCCHC6Q5VYS8 1495 aaKnown RBP30.22■■■□□ 2.43
SHMT2-202ENST00000414700 DCAF8L2P0C7V8 631 aa29.97■■■□□ 2.39
SHMT2-202ENST00000414700 DCAF1Q9Y4B6 1507 aa29.77■■■□□ 2.36
SHMT2-202ENST00000414700 MYO15BQ96JP2 1530 aa29.57■■■□□ 2.32
SHMT2-202ENST00000414700 NACADO15069 1562 aa29.54■■■□□ 2.32
SHMT2-202ENST00000414700 RB1CC1Q8TDY2 1594 aa29.4■■■□□ 2.3
SHMT2-202ENST00000414700 SHROOM4Q9ULL8 1493 aa29.21■■■□□ 2.27
SHMT2-202ENST00000414700 SCRIBQ14160 1630 aa29.09■■■□□ 2.25
SHMT2-202ENST00000414700 UNC13AQ9UPW8 1703 aa28.9■■■□□ 2.22
SHMT2-202ENST00000414700 BICRAQ9NZM4 1560 aa28.59■■■□□ 2.17
SHMT2-202ENST00000414700 PABPN1Q86U42 306 aaKnown RBP eCLIP28.55■■■□□ 2.16
SHMT2-202ENST00000414700 CECR2Q9BXF3 1484 aa28.12■■■□□ 2.09
SHMT2-202ENST00000414700 MROH2BQ7Z745 1585 aa27.9■■■□□ 2.06
SHMT2-202ENST00000414700 BAZ1AQ9NRL2 1556 aaPredicted RBP27.87■■■□□ 2.05
SHMT2-202ENST00000414700 SUPT5HO00267 1087 aaKnown RBP27.86■■■□□ 2.05
SHMT2-202ENST00000414700 RSF1Q96T23 1441 aaPredicted RBP27.84■■■□□ 2.05
SHMT2-202ENST00000414700 SMARCA4P51532 1647 aa27.84■■■□□ 2.05
SHMT2-202ENST00000414700 EIF4G1Q04637 1599 aaKnown RBP27.74■■■□□ 2.03
SHMT2-202ENST00000414700 WIZO95785 1651 aa27.66■■■□□ 2.02
SHMT2-202ENST00000414700 PEG3Q9GZU2 1588 aa27.49■■□□□ 1.99
SHMT2-202ENST00000414700 ATAD2BQ9ULI0 1458 aa27.47■■□□□ 1.99
SHMT2-202ENST00000414700 CC2D2AQ9P2K1 1620 aa27.45■■□□□ 1.98
SHMT2-202ENST00000414700 SMARCA2P51531 1590 aa27.41■■□□□ 1.98
SHMT2-202ENST00000414700 TOP2AP11388 1531 aaKnown RBP27.3■■□□□ 1.96
SHMT2-202ENST00000414700 NCAPD3P42695 1498 aa27.28■■□□□ 1.96
SHMT2-202ENST00000414700 BAZ1BQ9UIG0 1483 aaKnown RBP27.28■■□□□ 1.96
SHMT2-202ENST00000414700 HMGXB3Q12766 1538 aa27.21■■□□□ 1.95
SHMT2-202ENST00000414700 DNAJC5BQ9UF47 199 aa27.2■■□□□ 1.94
SHMT2-202ENST00000414700 CCDC88BA6NC98 1476 aa27.04■■□□□ 1.92
SHMT2-202ENST00000414700 CFTRP13569 1480 aa26.58■■□□□ 1.84
SHMT2-202ENST00000414700 CADPSQ9ULU8 1353 aa26.56■■□□□ 1.84
SHMT2-202ENST00000414700 NESP48681 1621 aa26.54■■□□□ 1.84
SHMT2-202ENST00000414700 PRDM2Q13029 1718 aa26.43■■□□□ 1.82
SHMT2-202ENST00000414700 CHIC1Q5VXU3 224 aa26.43■■□□□ 1.82
SHMT2-202ENST00000414700 LAMC3Q9Y6N6 1575 aa26.42■■□□□ 1.82
SHMT2-202ENST00000414700 ABCC8Q09428 1581 aa26.39■■□□□ 1.81
SHMT2-202ENST00000414700 FANCD2Q9BXW9 1451 aa26.28■■□□□ 1.8
SHMT2-202ENST00000414700 PDS5BQ9NTI5 1447 aa26.21■■□□□ 1.79
SHMT2-202ENST00000414700 KIF21AQ7Z4S6 1674 aa26.21■■□□□ 1.79
SHMT2-202ENST00000414700 WRNQ14191 1432 aaPredicted RBP eCLIP26.2■■□□□ 1.78
SHMT2-202ENST00000414700 TRIM41Q8WV44 630 aa26.19■■□□□ 1.78
SHMT2-202ENST00000414700 SYNJ1O43426 1573 aa26.16■■□□□ 1.78
SHMT2-202ENST00000414700 CEP164Q9UPV0 1460 aa26.15■■□□□ 1.78
SHMT2-202ENST00000414700 CUX1P39880 1505 aa26.1■■□□□ 1.77
SHMT2-202ENST00000414700 TOP2BQ02880 1626 aa26.04■■□□□ 1.76
SHMT2-202ENST00000414700 BIVM-ERCC5R4GMW8 1640 aa26.02■■□□□ 1.76
SHMT2-202ENST00000414700 ERCC6Q03468 1493 aa26.02■■□□□ 1.76
SHMT2-202ENST00000414700 URB2Q14146 1524 aaKnown RBP26■■□□□ 1.75
SHMT2-202ENST00000414700 TOPBP1Q92547 1522 aa25.96■■□□□ 1.75
SHMT2-202ENST00000414700 DNMBPQ6XZF7 1577 aa25.95■■□□□ 1.75
SHMT2-202ENST00000414700 MRC2Q9UBG0 1479 aa25.92■■□□□ 1.74
SHMT2-202ENST00000414700 FGD5Q6ZNL6 1462 aa25.87■■□□□ 1.73
SHMT2-202ENST00000414700 THOC2Q8NI27 1593 aaKnown RBP25.87■■□□□ 1.73
SHMT2-202ENST00000414700 WDR62O43379 1518 aa25.82■■□□□ 1.72
SHMT2-202ENST00000414700 POLA1P09884 1462 aaPredicted RBP25.81■■□□□ 1.72
SHMT2-202ENST00000414700 SOGA1O94964 1423 aa25.78■■□□□ 1.72
SHMT2-202ENST00000414700 FAM9AQ8IZU1 332 aaPredicted RBP25.76■■□□□ 1.71
SHMT2-202ENST00000414700 RAD54L2Q9Y4B4 1467 aa25.74■■□□□ 1.71
SHMT2-202ENST00000414700 RUSC2Q8N2Y8 1516 aa25.74■■□□□ 1.71
SHMT2-202ENST00000414700 CUX2O14529 1486 aa25.67■■□□□ 1.7
SHMT2-202ENST00000414700 TARBP1Q13395 1621 aaKnown RBP25.62■■□□□ 1.69
SHMT2-202ENST00000414700 ABCA10Q8WWZ4 1543 aa25.6■■□□□ 1.69
SHMT2-202ENST00000414700 WDR97A6NE52 1622 aa25.6■■□□□ 1.69
SHMT2-202ENST00000414700 KIF27Q86VH2 1401 aa25.55■■□□□ 1.68
SHMT2-202ENST00000414700 EEA1Q15075 1411 aa25.53■■□□□ 1.68
SHMT2-202ENST00000414700 TDRD9Q8NDG6 1382 aaKnown RBP25.53■■□□□ 1.68
SHMT2-202ENST00000414700 IFT140Q96RY7 1462 aa25.52■■□□□ 1.68
SHMT2-202ENST00000414700 CSRNP3Q8WYN3 585 aa25.49■■□□□ 1.67
SHMT2-202ENST00000414700 ZNF608Q9ULD9 1512 aaPredicted RBP25.48■■□□□ 1.67
SHMT2-202ENST00000414700 ABCA5Q8WWZ7 1642 aa25.46■■□□□ 1.67
SHMT2-202ENST00000414700 LOC105371045A0A1W2PR82 267 aa25.46■■□□□ 1.67
SHMT2-202ENST00000414700 EHMT2Q96KQ7 1210 aa25.46■■□□□ 1.67
SHMT2-202ENST00000414700 AQRO60306 1485 aaKnown RBP eCLIP25.44■■□□□ 1.664e-7■■■■□ 20.7
SHMT2-202ENST00000414700 GAPVD1Q14C86 1478 aa25.41■■□□□ 1.66
SHMT2-202ENST00000414700 IGF1RP08069 1367 aa25.4■■□□□ 1.66
SHMT2-202ENST00000414700 EIF4G3O43432 1585 aaKnown RBP25.37■■□□□ 1.65
SHMT2-202ENST00000414700 PBRM1Q86U86 1689 aa25.33■■□□□ 1.65
SHMT2-202ENST00000414700 PRXQ9BXM0 1461 aa25.3■■□□□ 1.64
SHMT2-202ENST00000414700 ERICH3Q5RHP9 1530 aa25.29■■□□□ 1.64
SHMT2-202ENST00000414700 KIF21BO75037 1637 aa25.28■■□□□ 1.64
SHMT2-202ENST00000414700 RAPGEF2Q9Y4G8 1499 aa25.27■■□□□ 1.64
SHMT2-202ENST00000414700 GRIN2BQ13224 1484 aa25.25■■□□□ 1.63
SHMT2-202ENST00000414700 CARMIL1Q5VZK9 1371 aa25.25■■□□□ 1.63
SHMT2-202ENST00000414700 CUL7Q14999 1698 aa25.22■■□□□ 1.63
SHMT2-202ENST00000414700 GOLGA3Q08378 1498 aa25.21■■□□□ 1.63
SHMT2-202ENST00000414700 SNAPC4Q5SXM2 1469 aa25.17■■□□□ 1.62
SHMT2-202ENST00000414700 ADAMTS12P58397 1594 aa25.15■■□□□ 1.62
SHMT2-202ENST00000414700 UBTFP17480 764 aaKnown RBP25.14■■□□□ 1.62
SHMT2-202ENST00000414700 FHAD1B1AJZ9 1412 aa25.1■■□□□ 1.61
SHMT2-202ENST00000414700 MAGI1Q96QZ7 1491 aaPredicted RBP25.08■■□□□ 1.61
SHMT2-202ENST00000414700 TNIKQ9UKE5 1360 aa25.04■■□□□ 1.6
SHMT2-202ENST00000414700 SYNJ2O15056 1496 aa25■■□□□ 1.59
SHMT2-202ENST00000414700 FBLN2P98095 1184 aa24.99■■□□□ 1.59
SHMT2-202ENST00000414700 GRIN2AQ12879 1464 aa24.97■■□□□ 1.59
SHMT2-202ENST00000414700 CHMP7Q8WUX9 453 aaPredicted RBP24.96■■□□□ 1.59
SHMT2-202ENST00000414700 RANGAP1P46060 587 aaPredicted RBP24.93■■□□□ 1.58
SHMT2-202ENST00000414700 CEP162Q5TB80 1403 aa24.92■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms