RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 NISCHQ9Y2I1 1504 aa33.14■■■□□ 2.9
SHMT2-232ENST00000557487 CCDC180Q9P1Z9 1646 aa29.41■■■□□ 2.3
SHMT2-232ENST00000557487 ABCC9O60706 1549 aa28.64■■■□□ 2.18
SHMT2-232ENST00000557487 ZCCHC6Q5VYS8 1495 aaKnown RBP27.95■■■□□ 2.06
SHMT2-232ENST00000557487 SHROOM4Q9ULL8 1493 aa27.9■■■□□ 2.06
SHMT2-232ENST00000557487 NACADO15069 1562 aa27.66■■■□□ 2.02
SHMT2-232ENST00000557487 RB1CC1Q8TDY2 1594 aa27.63■■■□□ 2.01
SHMT2-232ENST00000557487 MYO15BQ96JP2 1530 aa27.59■■■□□ 2.01
SHMT2-232ENST00000557487 SUPT5HO00267 1087 aaKnown RBP27.58■■■□□ 2.01
SHMT2-232ENST00000557487 DCAF8L2P0C7V8 631 aa27.55■■■□□ 2
SHMT2-232ENST00000557487 DCAF1Q9Y4B6 1507 aa27.48■■□□□ 1.99
SHMT2-232ENST00000557487 CHIC1Q5VXU3 224 aa27.16■■□□□ 1.94
SHMT2-232ENST00000557487 HRCP23327 699 aa26.98■■□□□ 1.91
SHMT2-232ENST00000557487 UNC13AQ9UPW8 1703 aa26.94■■□□□ 1.9
SHMT2-232ENST00000557487 BICRAQ9NZM4 1560 aa26.8■■□□□ 1.88
SHMT2-232ENST00000557487 PABPN1Q86U42 306 aaKnown RBP eCLIP26.78■■□□□ 1.88
SHMT2-232ENST00000557487 SCRIBQ14160 1630 aa26.77■■□□□ 1.88
SHMT2-232ENST00000557487 PCGF6Q9BYE7 350 aa26.53■■□□□ 1.84
SHMT2-232ENST00000557487 DNAJC5BQ9UF47 199 aa26.26■■□□□ 1.79
SHMT2-232ENST00000557487 TRIM26Q12899 539 aaPredicted RBP26.19■■□□□ 1.78
SHMT2-232ENST00000557487 LOC105371045A0A1W2PR82 267 aa26.17■■□□□ 1.78
SHMT2-232ENST00000557487 RSF1Q96T23 1441 aaPredicted RBP26.12■■□□□ 1.77
SHMT2-232ENST00000557487 EIF4G1Q04637 1599 aaKnown RBP26.07■■□□□ 1.76
SHMT2-232ENST00000557487 PPARGC1BQ86YN6 1023 aaKnown RBP26.02■■□□□ 1.76
SHMT2-232ENST00000557487 ZEB1P37275 1124 aaPredicted RBP25.96■■□□□ 1.75
SHMT2-232ENST00000557487 CC2D2AQ9P2K1 1620 aa25.93■■□□□ 1.74
SHMT2-232ENST00000557487 TRIM41Q8WV44 630 aa25.84■■□□□ 1.73
SHMT2-232ENST00000557487 CECR2Q9BXF3 1484 aa25.78■■□□□ 1.72
SHMT2-232ENST00000557487 BAZ1AQ9NRL2 1556 aaPredicted RBP25.67■■□□□ 1.7
SHMT2-232ENST00000557487 SMARCA4P51532 1647 aa25.66■■□□□ 1.7
SHMT2-232ENST00000557487 NCAPD3P42695 1498 aa25.55■■□□□ 1.68
SHMT2-232ENST00000557487 ATAD2BQ9ULI0 1458 aa25.53■■□□□ 1.68
SHMT2-232ENST00000557487 MROH2BQ7Z745 1585 aa25.51■■□□□ 1.67
SHMT2-232ENST00000557487 SMARCA2P51531 1590 aa25.5■■□□□ 1.67
SHMT2-232ENST00000557487 PEG3Q9GZU2 1588 aa25.47■■□□□ 1.67
SHMT2-232ENST00000557487 HMGXB3Q12766 1538 aa25.4■■□□□ 1.66
SHMT2-232ENST00000557487 FAM9AQ8IZU1 332 aaPredicted RBP25.39■■□□□ 1.66
SHMT2-232ENST00000557487 WIZO95785 1651 aa25.34■■□□□ 1.65
SHMT2-232ENST00000557487 BAZ1BQ9UIG0 1483 aaKnown RBP25.3■■□□□ 1.64
SHMT2-232ENST00000557487 PELP1Q8IZL8 1130 aaKnown RBP25.27■■□□□ 1.64
SHMT2-232ENST00000557487 TOP2AP11388 1531 aaKnown RBP25.14■■□□□ 1.61
SHMT2-232ENST00000557487 WRNQ14191 1432 aaPredicted RBP eCLIP25.1■■□□□ 1.61
SHMT2-232ENST00000557487 EEA1Q15075 1411 aa24.99■■□□□ 1.59
SHMT2-232ENST00000557487 EHMT2Q96KQ7 1210 aa24.97■■□□□ 1.59
SHMT2-232ENST00000557487 SCAF1Q9H7N4 1312 aaKnown RBP24.92■■□□□ 1.58
SHMT2-232ENST00000557487 CCDC88BA6NC98 1476 aa24.92■■□□□ 1.58
SHMT2-232ENST00000557487 CCER1Q8TC90 406 aaPredicted RBP24.91■■□□□ 1.58
SHMT2-232ENST00000557487 TNIKQ9UKE5 1360 aa24.9■■□□□ 1.58
SHMT2-232ENST00000557487 CEP162Q5TB80 1403 aa24.85■■□□□ 1.57
SHMT2-232ENST00000557487 ABCC8Q09428 1581 aa24.84■■□□□ 1.57
SHMT2-232ENST00000557487 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.82■■□□□ 1.56
SHMT2-232ENST00000557487 NESP48681 1621 aa24.81■■□□□ 1.56
SHMT2-232ENST00000557487 LAMC3Q9Y6N6 1575 aa24.81■■□□□ 1.56
SHMT2-232ENST00000557487 CADPSQ9ULU8 1353 aa24.79■■□□□ 1.56
SHMT2-232ENST00000557487 ACIN1Q9UKV3 1341 aaKnown RBP24.72■■□□□ 1.55
SHMT2-232ENST00000557487 CSRNP3Q8WYN3 585 aa24.7■■□□□ 1.54
SHMT2-232ENST00000557487 SOGA1O94964 1423 aa24.69■■□□□ 1.54
SHMT2-232ENST00000557487 GOLGA3Q08378 1498 aa24.69■■□□□ 1.54
SHMT2-232ENST00000557487 ERCC6Q03468 1493 aa24.68■■□□□ 1.54
SHMT2-232ENST00000557487 CFTRP13569 1480 aa24.66■■□□□ 1.54
SHMT2-232ENST00000557487 PDS5BQ9NTI5 1447 aa24.65■■□□□ 1.54
SHMT2-232ENST00000557487 CENPBP07199 599 aaPredicted RBP24.65■■□□□ 1.54
SHMT2-232ENST00000557487 DIEXFQ68CQ4 756 aaKnown RBP24.65■■□□□ 1.54
SHMT2-232ENST00000557487 KIF21BO75037 1637 aa24.54■■□□□ 1.52
SHMT2-232ENST00000557487 CEP164Q9UPV0 1460 aa24.53■■□□□ 1.52
SHMT2-232ENST00000557487 UBTFP17480 764 aaKnown RBP24.52■■□□□ 1.52
SHMT2-232ENST00000557487 NEUROD1Q13562 356 aa24.51■■□□□ 1.51
SHMT2-232ENST00000557487 RUSC2Q8N2Y8 1516 aa24.5■■□□□ 1.51
SHMT2-232ENST00000557487 KIF21AQ7Z4S6 1674 aa24.49■■□□□ 1.51
SHMT2-232ENST00000557487 FANCD2Q9BXW9 1451 aa24.46■■□□□ 1.51
SHMT2-232ENST00000557487 CUX2O14529 1486 aa24.46■■□□□ 1.51
SHMT2-232ENST00000557487 ZNF316A6NFI3 1004 aaPredicted RBP24.45■■□□□ 1.5
SHMT2-232ENST00000557487 THOC2Q8NI27 1593 aaKnown RBP24.44■■□□□ 1.5
SHMT2-232ENST00000557487 PRDM2Q13029 1718 aa24.39■■□□□ 1.5
SHMT2-232ENST00000557487 MRC2Q9UBG0 1479 aa24.38■■□□□ 1.49
SHMT2-232ENST00000557487 SYNJ1O43426 1573 aa24.35■■□□□ 1.49
SHMT2-232ENST00000557487 CLIP1P30622 1438 aa24.34■■□□□ 1.49
SHMT2-232ENST00000557487 VPS8Q8N3P4 1428 aa24.34■■□□□ 1.49
SHMT2-232ENST00000557487 GTF3C3Q9Y5Q9 886 aa24.32■■□□□ 1.48
SHMT2-232ENST00000557487 TTBK1Q5TCY1 1321 aaPredicted RBP24.31■■□□□ 1.48
SHMT2-232ENST00000557487 WDR62O43379 1518 aa24.3■■□□□ 1.48
SHMT2-232ENST00000557487 URB2Q14146 1524 aaKnown RBP24.21■■□□□ 1.47
SHMT2-232ENST00000557487 MYT1Q01538 1121 aa24.2■■□□□ 1.46
SHMT2-232ENST00000557487 APLP2Q06481 763 aa24.18■■□□□ 1.46
SHMT2-232ENST00000557487 CLSPNQ9HAW4 1339 aa24.17■■□□□ 1.46
SHMT2-232ENST00000557487 TOP2BQ02880 1626 aa24.15■■□□□ 1.46
SHMT2-232ENST00000557487 RAPGEF2Q9Y4G8 1499 aa24.13■■□□□ 1.45
SHMT2-232ENST00000557487 ERICH3Q5RHP9 1530 aa24.12■■□□□ 1.45
SHMT2-232ENST00000557487 HNRNPUL2Q1KMD3 747 aaKnown RBP24.09■■□□□ 1.45
SHMT2-232ENST00000557487 TOPBP1Q92547 1522 aa24.09■■□□□ 1.45
SHMT2-232ENST00000557487 BIVM-ERCC5R4GMW8 1640 aa24.09■■□□□ 1.45
SHMT2-232ENST00000557487 DNMBPQ6XZF7 1577 aa24.06■■□□□ 1.44
SHMT2-232ENST00000557487 PRXQ9BXM0 1461 aa23.99■■□□□ 1.43
SHMT2-232ENST00000557487 MIER1Q8N108 512 aa23.98■■□□□ 1.43
SHMT2-232ENST00000557487 IFT140Q96RY7 1462 aa23.94■■□□□ 1.42
SHMT2-232ENST00000557487 CUX1P39880 1505 aa23.92■■□□□ 1.42
SHMT2-232ENST00000557487 ARAP1Q96P48 1450 aa23.89■■□□□ 1.42
SHMT2-232ENST00000557487 POLA1P09884 1462 aaPredicted RBP23.89■■□□□ 1.41
SHMT2-232ENST00000557487 DHX57Q6P158 1386 aaKnown RBP23.87■■□□□ 1.41
SHMT2-232ENST00000557487 RRBP1Q9P2E9 1410 aaKnown RBP23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms