RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 NISCHQ9Y2I1 1504 aa25.06■■□□□ 1.6
SHMT2-226ENST00000556825 PELP1Q8IZL8 1130 aaKnown RBP24.64■■□□□ 1.54
SHMT2-226ENST00000556825 MYT1Q01538 1121 aa24.11■■□□□ 1.45
SHMT2-226ENST00000556825 HRCP23327 699 aa23.58■■□□□ 1.37
SHMT2-226ENST00000556825 TTBK1Q5TCY1 1321 aaPredicted RBP23.03■■□□□ 1.28
SHMT2-226ENST00000556825 SCAF1Q9H7N4 1312 aaKnown RBP22.88■■□□□ 1.25
SHMT2-226ENST00000556825 PPARGC1BQ86YN6 1023 aaKnown RBP22.84■■□□□ 1.25
SHMT2-226ENST00000556825 PCGF6Q9BYE7 350 aa22.37■■□□□ 1.17
SHMT2-226ENST00000556825 PRKCSHP14314 528 aaPredicted RBP22.22■■□□□ 1.15
SHMT2-226ENST00000556825 BCL11AQ9H165 835 aa22.16■■□□□ 1.14
SHMT2-226ENST00000556825 ACIN1Q9UKV3 1341 aaKnown RBP22.03■■□□□ 1.12
SHMT2-226ENST00000556825 FAM9AQ8IZU1 332 aaPredicted RBP21.92■■□□□ 1.1
SHMT2-226ENST00000556825 CENPBP07199 599 aaPredicted RBP21.89■■□□□ 1.09
SHMT2-226ENST00000556825 ERICH6Q7L0X2 663 aa21.84■■□□□ 1.09
SHMT2-226ENST00000556825 MYO15BQ96JP2 1530 aa21.83■■□□□ 1.08
SHMT2-226ENST00000556825 NEUROD1Q13562 356 aa21.83■■□□□ 1.08
SHMT2-226ENST00000556825 GTF3C3Q9Y5Q9 886 aa21.83■■□□□ 1.08
SHMT2-226ENST00000556825 ZEB1P37275 1124 aaPredicted RBP21.82■■□□□ 1.08
SHMT2-226ENST00000556825 APLP2Q06481 763 aa21.68■■□□□ 1.06
SHMT2-226ENST00000556825 CCDC180Q9P1Z9 1646 aa21.68■■□□□ 1.06
SHMT2-226ENST00000556825 DCAF1Q9Y4B6 1507 aa21.59■■□□□ 1.05
SHMT2-226ENST00000556825 TRIM26Q12899 539 aaPredicted RBP21.49■■□□□ 1.03
SHMT2-226ENST00000556825 ANP32EQ9BTT0 268 aa21.45■■□□□ 1.02
SHMT2-226ENST00000556825 CHIC1Q5VXU3 224 aa21.2■□□□□ 0.98
SHMT2-226ENST00000556825 CSRNP3Q8WYN3 585 aa21.17■□□□□ 0.98
SHMT2-226ENST00000556825 ZCCHC6Q5VYS8 1495 aaKnown RBP21.08■□□□□ 0.96
SHMT2-226ENST00000556825 SHROOM4Q9ULL8 1493 aa20.99■□□□□ 0.95
SHMT2-226ENST00000556825 SUPT5HO00267 1087 aaKnown RBP20.98■□□□□ 0.95
SHMT2-226ENST00000556825 DIEXFQ68CQ4 756 aaKnown RBP20.97■□□□□ 0.95
SHMT2-226ENST00000556825 TSHZ2Q9NRE2 1034 aa20.78■□□□□ 0.92
SHMT2-226ENST00000556825 DCAF8L2P0C7V8 631 aa20.77■□□□□ 0.91
SHMT2-226ENST00000556825 LOC105371045A0A1W2PR82 267 aa20.72■□□□□ 0.91
SHMT2-226ENST00000556825 SLC24A1O60721 1099 aa20.72■□□□□ 0.91
SHMT2-226ENST00000556825 CLSPNQ9HAW4 1339 aa20.66■□□□□ 0.9
SHMT2-226ENST00000556825 YTHDC1Q96MU7 727 aaKnown RBP20.61■□□□□ 0.89
SHMT2-226ENST00000556825 ANO8Q9HCE9 1232 aaPredicted RBP20.61■□□□□ 0.89
SHMT2-226ENST00000556825 TRIM41Q8WV44 630 aa20.57■□□□□ 0.88
SHMT2-226ENST00000556825 SUPT16HQ9Y5B9 1047 aaKnown RBP20.54■□□□□ 0.88
SHMT2-226ENST00000556825 UBE2Q2Q8WVN8 375 aa20.51■□□□□ 0.87
SHMT2-226ENST00000556825 EIF5BO60841 1220 aaKnown RBP20.38■□□□□ 0.85
SHMT2-226ENST00000556825 CCER1Q8TC90 406 aaPredicted RBP20.37■□□□□ 0.85
SHMT2-226ENST00000556825 ZNF316A6NFI3 1004 aaPredicted RBP20.34■□□□□ 0.85
SHMT2-226ENST00000556825 ABCC9O60706 1549 aa20.32■□□□□ 0.84
SHMT2-226ENST00000556825 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.31■□□□□ 0.84
SHMT2-226ENST00000556825 MIER1Q8N108 512 aa20.3■□□□□ 0.84
SHMT2-226ENST00000556825 MYT1LQ9UL68 1186 aa20.3■□□□□ 0.84
SHMT2-226ENST00000556825 DAXXQ9UER7 740 aaPredicted RBP20.26■□□□□ 0.83
SHMT2-226ENST00000556825 ERICH6BQ5W0A0 696 aa20.23■□□□□ 0.83
SHMT2-226ENST00000556825 SALL2Q9Y467 1007 aaPredicted RBP20.23■□□□□ 0.83
SHMT2-226ENST00000556825 RBM19Q9Y4C8 960 aaKnown RBP20.17■□□□□ 0.82
SHMT2-226ENST00000556825 NACADO15069 1562 aa20.14■□□□□ 0.81
SHMT2-226ENST00000556825 MSH5O43196 834 aa20.1■□□□□ 0.81
SHMT2-226ENST00000556825 DEKP35659 375 aaKnown RBP20.1■□□□□ 0.81
SHMT2-226ENST00000556825 CCDC136Q96JN2 1154 aa20.06■□□□□ 0.8
SHMT2-226ENST00000556825 SCRIBQ14160 1630 aa20.04■□□□□ 0.8
SHMT2-226ENST00000556825 PKNOX2Q96KN3 472 aa19.97■□□□□ 0.79
SHMT2-226ENST00000556825 FANCIQ9NVI1 1328 aa19.92■□□□□ 0.78
SHMT2-226ENST00000556825 RB1CC1Q8TDY2 1594 aa19.91■□□□□ 0.78
SHMT2-226ENST00000556825 PLEKHG5O94827 1062 aa19.88■□□□□ 0.77
SHMT2-226ENST00000556825 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.79■□□□□ 0.76
SHMT2-226ENST00000556825 BCANQ96GW7 911 aa19.78■□□□□ 0.76
SHMT2-226ENST00000556825 PODXL2Q9NZ53 605 aa19.77■□□□□ 0.76
SHMT2-226ENST00000556825 FKBP8Q14318 412 aa19.69■□□□□ 0.74
SHMT2-226ENST00000556825 IL27Q8NEV9 243 aa19.64■□□□□ 0.73
SHMT2-226ENST00000556825 UNC13AQ9UPW8 1703 aa19.58■□□□□ 0.72
SHMT2-226ENST00000556825 RSF1Q96T23 1441 aaPredicted RBP19.57■□□□□ 0.72
SHMT2-226ENST00000556825 RTN4Q9NQC3 1192 aaKnown RBP19.54■□□□□ 0.72
SHMT2-226ENST00000556825 NEFLP07196 543 aa19.51■□□□□ 0.71
SHMT2-226ENST00000556825 ITGAEP38570 1179 aa19.49■□□□□ 0.71
SHMT2-226ENST00000556825 CECR2Q9BXF3 1484 aa19.48■□□□□ 0.71
SHMT2-226ENST00000556825 CDK11AQ9UQ88 783 aaPredicted RBP19.43■□□□□ 0.7
SHMT2-226ENST00000556825 NBR1Q14596 966 aa19.43■□□□□ 0.7
SHMT2-226ENST00000556825 MROH2BQ7Z745 1585 aa19.39■□□□□ 0.69
SHMT2-226ENST00000556825 NOP58Q9Y2X3 529 aaKnown RBP19.38■□□□□ 0.69
SHMT2-226ENST00000556825 GLIPR1L2Q4G1C9 344 aa19.37■□□□□ 0.69
SHMT2-226ENST00000556825 RTL5Q5HYW3 569 aaPredicted RBP19.34■□□□□ 0.69
SHMT2-226ENST00000556825 C11orf95C9JLR9 678 aaPredicted RBP19.32■□□□□ 0.68
SHMT2-226ENST00000556825 BAZ1AQ9NRL2 1556 aaPredicted RBP19.32■□□□□ 0.68
SHMT2-226ENST00000556825 ZMYND15Q9H091 742 aa19.31■□□□□ 0.68
SHMT2-226ENST00000556825 BICRAQ9NZM4 1560 aa19.31■□□□□ 0.68
SHMT2-226ENST00000556825 DNAJC5BQ9UF47 199 aa19.29■□□□□ 0.68
SHMT2-226ENST00000556825 WIZO95785 1651 aa19.28■□□□□ 0.68
SHMT2-226ENST00000556825 PABPN1Q86U42 306 aaKnown RBP eCLIP19.27■□□□□ 0.68
SHMT2-226ENST00000556825 RSPH6AQ9H0K4 717 aa19.25■□□□□ 0.67
SHMT2-226ENST00000556825 PAK3O75914 559 aaPredicted RBP19.23■□□□□ 0.67
SHMT2-226ENST00000556825 EHMT2Q96KQ7 1210 aa19.21■□□□□ 0.67
SHMT2-226ENST00000556825 SMARCA4P51532 1647 aa19.2■□□□□ 0.66
SHMT2-226ENST00000556825 KCNH8Q96L42 1107 aa19.2■□□□□ 0.66
SHMT2-226ENST00000556825 WASHC2AQ641Q2 1341 aa19.19■□□□□ 0.66
SHMT2-226ENST00000556825 VSIG10Q8N0Z9 540 aa19.19■□□□□ 0.66
SHMT2-226ENST00000556825 WRNQ14191 1432 aaPredicted RBP eCLIP19.17■□□□□ 0.66
SHMT2-226ENST00000556825 WASHC2CQ9Y4E1 1318 aa19.16■□□□□ 0.66
SHMT2-226ENST00000556825 TIMELESSQ9UNS1 1208 aa19.15■□□□□ 0.66
SHMT2-226ENST00000556825 FGD1P98174 961 aa19.03■□□□□ 0.64
SHMT2-226ENST00000556825 TOP2AP11388 1531 aaKnown RBP19.02■□□□□ 0.64
SHMT2-226ENST00000556825 PDE4CQ08493 712 aa19.02■□□□□ 0.64
SHMT2-226ENST00000556825 USP35Q9P2H5 1018 aa19.02■□□□□ 0.64
SHMT2-226ENST00000556825 IPO9Q96P70 1041 aaKnown RBP19.01■□□□□ 0.63
SHMT2-226ENST00000556825 BRPF3Q9ULD4 1205 aa19.01■□□□□ 0.63
SHMT2-226ENST00000556825 ZBTB47Q9UFB7 747 aaPredicted RBP18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms