RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 NISCHQ9Y2I1 1504 aa28.24■■■□□ 2.11
SHMT2-222ENST00000555774 CCDC180Q9P1Z9 1646 aa24.17■■□□□ 1.46
SHMT2-222ENST00000555774 ZCCHC6Q5VYS8 1495 aaKnown RBP23.92■■□□□ 1.42
SHMT2-222ENST00000555774 SHROOM4Q9ULL8 1493 aa23.7■■□□□ 1.38
SHMT2-222ENST00000555774 DCAF1Q9Y4B6 1507 aa23.36■■□□□ 1.33
SHMT2-222ENST00000555774 SUPT5HO00267 1087 aaKnown RBP23.25■■□□□ 1.31
SHMT2-222ENST00000555774 DCAF8L2P0C7V8 631 aa23.03■■□□□ 1.28
SHMT2-222ENST00000555774 CHIC1Q5VXU3 224 aa22.75■■□□□ 1.23
SHMT2-222ENST00000555774 MYO15BQ96JP2 1530 aa22.73■■□□□ 1.23
SHMT2-222ENST00000555774 ABCC9O60706 1549 aa22.57■■□□□ 1.2
SHMT2-222ENST00000555774 SCRIBQ14160 1630 aa22.39■■□□□ 1.17
SHMT2-222ENST00000555774 NACADO15069 1562 aa22.31■■□□□ 1.16
SHMT2-222ENST00000555774 RSF1Q96T23 1441 aaPredicted RBP22.27■■□□□ 1.16
SHMT2-222ENST00000555774 RB1CC1Q8TDY2 1594 aa22.11■■□□□ 1.13
SHMT2-222ENST00000555774 HRCP23327 699 aa22.03■■□□□ 1.12
SHMT2-222ENST00000555774 LOC105371045A0A1W2PR82 267 aa21.9■■□□□ 1.1
SHMT2-222ENST00000555774 CECR2Q9BXF3 1484 aa21.88■■□□□ 1.09
SHMT2-222ENST00000555774 PCGF6Q9BYE7 350 aa21.88■■□□□ 1.09
SHMT2-222ENST00000555774 MROH2BQ7Z745 1585 aa21.86■■□□□ 1.09
SHMT2-222ENST00000555774 TRIM41Q8WV44 630 aa21.8■■□□□ 1.08
SHMT2-222ENST00000555774 BAZ1AQ9NRL2 1556 aaPredicted RBP21.74■■□□□ 1.07
SHMT2-222ENST00000555774 WIZO95785 1651 aa21.71■■□□□ 1.07
SHMT2-222ENST00000555774 TRIM26Q12899 539 aaPredicted RBP21.66■■□□□ 1.06
SHMT2-222ENST00000555774 EIF4G1Q04637 1599 aaKnown RBP21.57■■□□□ 1.04
SHMT2-222ENST00000555774 TOP2AP11388 1531 aaKnown RBP21.53■■□□□ 1.04
SHMT2-222ENST00000555774 SMARCA4P51532 1647 aa21.51■■□□□ 1.03
SHMT2-222ENST00000555774 UNC13AQ9UPW8 1703 aa21.46■■□□□ 1.03
SHMT2-222ENST00000555774 FAM9AQ8IZU1 332 aaPredicted RBP21.43■■□□□ 1.02
SHMT2-222ENST00000555774 SMARCA2P51531 1590 aa21.35■■□□□ 1.01
SHMT2-222ENST00000555774 PPARGC1BQ86YN6 1023 aaKnown RBP21.33■■□□□ 1.01
SHMT2-222ENST00000555774 CCDC88BA6NC98 1476 aa21.33■■□□□ 1.01
SHMT2-222ENST00000555774 ZEB1P37275 1124 aaPredicted RBP21.3■■□□□ 1
SHMT2-222ENST00000555774 BICRAQ9NZM4 1560 aa21.23■□□□□ 0.99
SHMT2-222ENST00000555774 PEG3Q9GZU2 1588 aa21.21■□□□□ 0.99
SHMT2-222ENST00000555774 ABCC8Q09428 1581 aa21.17■□□□□ 0.98
SHMT2-222ENST00000555774 EEA1Q15075 1411 aa21.14■□□□□ 0.97
SHMT2-222ENST00000555774 EHMT2Q96KQ7 1210 aa21.09■□□□□ 0.97
SHMT2-222ENST00000555774 WRNQ14191 1432 aaPredicted RBP eCLIP21.05■□□□□ 0.96
SHMT2-222ENST00000555774 PABPN1Q86U42 306 aaKnown RBP eCLIP21.01■□□□□ 0.95
SHMT2-222ENST00000555774 TNIKQ9UKE5 1360 aa21■□□□□ 0.95
SHMT2-222ENST00000555774 SOGA1O94964 1423 aa20.98■□□□□ 0.95
SHMT2-222ENST00000555774 CEP162Q5TB80 1403 aa20.95■□□□□ 0.94
SHMT2-222ENST00000555774 ATAD2BQ9ULI0 1458 aa20.94■□□□□ 0.94
SHMT2-222ENST00000555774 CSRNP3Q8WYN3 585 aa20.92■□□□□ 0.94
SHMT2-222ENST00000555774 GOLGA3Q08378 1498 aa20.89■□□□□ 0.93
SHMT2-222ENST00000555774 BAZ1BQ9UIG0 1483 aaKnown RBP20.88■□□□□ 0.93
SHMT2-222ENST00000555774 RUSC2Q8N2Y8 1516 aa20.83■□□□□ 0.93
SHMT2-222ENST00000555774 SYNJ1O43426 1573 aa20.81■□□□□ 0.92
SHMT2-222ENST00000555774 KIF21BO75037 1637 aa20.8■□□□□ 0.92
SHMT2-222ENST00000555774 CEP164Q9UPV0 1460 aa20.78■□□□□ 0.92
SHMT2-222ENST00000555774 UBTFP17480 764 aaKnown RBP20.72■□□□□ 0.91
SHMT2-222ENST00000555774 CCER1Q8TC90 406 aaPredicted RBP20.65■□□□□ 0.9
SHMT2-222ENST00000555774 HMGXB3Q12766 1538 aa20.65■□□□□ 0.9
SHMT2-222ENST00000555774 TOP2BQ02880 1626 aa20.65■□□□□ 0.9
SHMT2-222ENST00000555774 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.62■□□□□ 0.89
SHMT2-222ENST00000555774 BIVM-ERCC5R4GMW8 1640 aa20.61■□□□□ 0.89
SHMT2-222ENST00000555774 NCAPD3P42695 1498 aa20.6■□□□□ 0.89
SHMT2-222ENST00000555774 CLIP1P30622 1438 aa20.57■□□□□ 0.88
SHMT2-222ENST00000555774 VPS8Q8N3P4 1428 aa20.53■□□□□ 0.88
SHMT2-222ENST00000555774 RAPGEF2Q9Y4G8 1499 aa20.51■□□□□ 0.87
SHMT2-222ENST00000555774 ERICH3Q5RHP9 1530 aa20.49■□□□□ 0.87
SHMT2-222ENST00000555774 TTBK1Q5TCY1 1321 aaPredicted RBP20.45■□□□□ 0.86
SHMT2-222ENST00000555774 PRXQ9BXM0 1461 aa20.43■□□□□ 0.86
SHMT2-222ENST00000555774 CFTRP13569 1480 aa20.4■□□□□ 0.86
SHMT2-222ENST00000555774 CUX1P39880 1505 aa20.38■□□□□ 0.85
SHMT2-222ENST00000555774 APLP2Q06481 763 aa20.35■□□□□ 0.85
SHMT2-222ENST00000555774 KIF27Q86VH2 1401 aa20.33■□□□□ 0.84
SHMT2-222ENST00000555774 PRDM2Q13029 1718 aa20.31■□□□□ 0.84
SHMT2-222ENST00000555774 ARAP1Q96P48 1450 aa20.26■□□□□ 0.83
SHMT2-222ENST00000555774 DIEXFQ68CQ4 756 aaKnown RBP20.25■□□□□ 0.83
SHMT2-222ENST00000555774 HNRNPUL2Q1KMD3 747 aaKnown RBP20.18■□□□□ 0.82
SHMT2-222ENST00000555774 ZNF316A6NFI3 1004 aaPredicted RBP20.17■□□□□ 0.82
SHMT2-222ENST00000555774 SCAF1Q9H7N4 1312 aaKnown RBP20.16■□□□□ 0.82
SHMT2-222ENST00000555774 CADPSQ9ULU8 1353 aa20.15■□□□□ 0.82
SHMT2-222ENST00000555774 RANGAP1P46060 587 aaPredicted RBP20.11■□□□□ 0.81
SHMT2-222ENST00000555774 CLSPNQ9HAW4 1339 aa20.11■□□□□ 0.81
SHMT2-222ENST00000555774 ACIN1Q9UKV3 1341 aaKnown RBP20.09■□□□□ 0.81
SHMT2-222ENST00000555774 ARHGAP35Q9NRY4 1499 aa20.08■□□□□ 0.81
SHMT2-222ENST00000555774 RRBP1Q9P2E9 1410 aaKnown RBP20.08■□□□□ 0.8
SHMT2-222ENST00000555774 CUX2O14529 1486 aa20.07■□□□□ 0.8
SHMT2-222ENST00000555774 CENPBP07199 599 aaPredicted RBP20.06■□□□□ 0.8
SHMT2-222ENST00000555774 IGF1RP08069 1367 aa20.05■□□□□ 0.8
SHMT2-222ENST00000555774 FGD5Q6ZNL6 1462 aa20.02■□□□□ 0.8
SHMT2-222ENST00000555774 MAP3K1Q13233 1512 aa20.02■□□□□ 0.8
SHMT2-222ENST00000555774 KANK4Q5T7N3 995 aaPredicted RBP20■□□□□ 0.79
SHMT2-222ENST00000555774 CC2D2AQ9P2K1 1620 aa19.99■□□□□ 0.79
SHMT2-222ENST00000555774 CARMIL1Q5VZK9 1371 aa19.97■□□□□ 0.79
SHMT2-222ENST00000555774 NEUROD1Q13562 356 aa19.97■□□□□ 0.79
SHMT2-222ENST00000555774 PELP1Q8IZL8 1130 aaKnown RBP19.97■□□□□ 0.79
SHMT2-222ENST00000555774 DHX57Q6P158 1386 aaKnown RBP19.96■□□□□ 0.79
SHMT2-222ENST00000555774 CCNB3Q8WWL7 1395 aa19.93■□□□□ 0.78
SHMT2-222ENST00000555774 FANCD2Q9BXW9 1451 aa19.93■□□□□ 0.78
SHMT2-222ENST00000555774 DNMBPQ6XZF7 1577 aa19.91■□□□□ 0.78
SHMT2-222ENST00000555774 TIAM1Q13009 1591 aa19.91■□□□□ 0.78
SHMT2-222ENST00000555774 FHAD1B1AJZ9 1412 aa19.87■□□□□ 0.77
SHMT2-222ENST00000555774 ABCA10Q8WWZ4 1543 aa19.87■□□□□ 0.77
SHMT2-222ENST00000555774 LRRC9Q6ZRR7 1453 aa19.81■□□□□ 0.76
SHMT2-222ENST00000555774 TOPBP1Q92547 1522 aa19.81■□□□□ 0.76
SHMT2-222ENST00000555774 CUL7Q14999 1698 aa19.81■□□□□ 0.76
SHMT2-222ENST00000555774 CFAP43Q8NDM7 1665 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms