RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 NISCHQ9Y2I1 1504 aa25.39■■□□□ 1.66
SHMT2-212ENST00000554467 CCDC180Q9P1Z9 1646 aa21.77■■□□□ 1.07
SHMT2-212ENST00000554467 SHROOM4Q9ULL8 1493 aa21.45■■□□□ 1.02
SHMT2-212ENST00000554467 DCAF8L2P0C7V8 631 aa21.42■■□□□ 1.02
SHMT2-212ENST00000554467 ZCCHC6Q5VYS8 1495 aaKnown RBP21.36■■□□□ 1.01
SHMT2-212ENST00000554467 ABCC9O60706 1549 aa20.79■□□□□ 0.92
SHMT2-212ENST00000554467 SUPT5HO00267 1087 aaKnown RBP20.77■□□□□ 0.92
SHMT2-212ENST00000554467 DCAF1Q9Y4B6 1507 aa20.75■□□□□ 0.91
SHMT2-212ENST00000554467 SCRIBQ14160 1630 aa20.45■□□□□ 0.86
SHMT2-212ENST00000554467 MYO15BQ96JP2 1530 aa20.32■□□□□ 0.84
SHMT2-212ENST00000554467 NACADO15069 1562 aa20.28■□□□□ 0.84
SHMT2-212ENST00000554467 RB1CC1Q8TDY2 1594 aa20.09■□□□□ 0.81
SHMT2-212ENST00000554467 RSF1Q96T23 1441 aaPredicted RBP19.92■□□□□ 0.78
SHMT2-212ENST00000554467 CECR2Q9BXF3 1484 aa19.91■□□□□ 0.78
SHMT2-212ENST00000554467 CHIC1Q5VXU3 224 aa19.85■□□□□ 0.77
SHMT2-212ENST00000554467 PABPN1Q86U42 306 aaKnown RBP eCLIP19.83■□□□□ 0.76
SHMT2-212ENST00000554467 UNC13AQ9UPW8 1703 aa19.79■□□□□ 0.76
SHMT2-212ENST00000554467 MROH2BQ7Z745 1585 aa19.76■□□□□ 0.75
SHMT2-212ENST00000554467 WIZO95785 1651 aa19.63■□□□□ 0.73
SHMT2-212ENST00000554467 BICRAQ9NZM4 1560 aa19.57■□□□□ 0.72
SHMT2-212ENST00000554467 BAZ1AQ9NRL2 1556 aaPredicted RBP19.53■□□□□ 0.72
SHMT2-212ENST00000554467 SMARCA4P51532 1647 aa19.45■□□□□ 0.7
SHMT2-212ENST00000554467 TRIM41Q8WV44 630 aa19.32■□□□□ 0.68
SHMT2-212ENST00000554467 LOC105371045A0A1W2PR82 267 aa19.32■□□□□ 0.68
SHMT2-212ENST00000554467 TOP2AP11388 1531 aaKnown RBP19.26■□□□□ 0.67
SHMT2-212ENST00000554467 FAM9AQ8IZU1 332 aaPredicted RBP19.25■□□□□ 0.67
SHMT2-212ENST00000554467 CCDC88BA6NC98 1476 aa19.21■□□□□ 0.67
SHMT2-212ENST00000554467 EHMT2Q96KQ7 1210 aa19.18■□□□□ 0.66
SHMT2-212ENST00000554467 SMARCA2P51531 1590 aa19.16■□□□□ 0.66
SHMT2-212ENST00000554467 ATAD2BQ9ULI0 1458 aa19.1■□□□□ 0.65
SHMT2-212ENST00000554467 EIF4G1Q04637 1599 aaKnown RBP19.05■□□□□ 0.64
SHMT2-212ENST00000554467 ABCC8Q09428 1581 aa19.04■□□□□ 0.64
SHMT2-212ENST00000554467 PEG3Q9GZU2 1588 aa19.04■□□□□ 0.64
SHMT2-212ENST00000554467 BAZ1BQ9UIG0 1483 aaKnown RBP19.03■□□□□ 0.64
SHMT2-212ENST00000554467 HRCP23327 699 aa18.87■□□□□ 0.61
SHMT2-212ENST00000554467 NCAPD3P42695 1498 aa18.78■□□□□ 0.6
SHMT2-212ENST00000554467 PCGF6Q9BYE7 350 aa18.75■□□□□ 0.59
SHMT2-212ENST00000554467 SOGA1O94964 1423 aa18.75■□□□□ 0.59
SHMT2-212ENST00000554467 WRNQ14191 1432 aaPredicted RBP eCLIP18.73■□□□□ 0.59
SHMT2-212ENST00000554467 HMGXB3Q12766 1538 aa18.71■□□□□ 0.59
SHMT2-212ENST00000554467 RUSC2Q8N2Y8 1516 aa18.7■□□□□ 0.58
SHMT2-212ENST00000554467 SYNJ1O43426 1573 aa18.67■□□□□ 0.58
SHMT2-212ENST00000554467 CC2D2AQ9P2K1 1620 aa18.66■□□□□ 0.58
SHMT2-212ENST00000554467 PPARGC1BQ86YN6 1023 aaKnown RBP18.59■□□□□ 0.57
SHMT2-212ENST00000554467 CSRNP3Q8WYN3 585 aa18.57■□□□□ 0.56
SHMT2-212ENST00000554467 UBTFP17480 764 aaKnown RBP18.52■□□□□ 0.55
SHMT2-212ENST00000554467 CFTRP13569 1480 aa18.5■□□□□ 0.55
SHMT2-212ENST00000554467 DNAJC5BQ9UF47 199 aa18.48■□□□□ 0.55
SHMT2-212ENST00000554467 TOP2BQ02880 1626 aa18.43■□□□□ 0.54
SHMT2-212ENST00000554467 EEA1Q15075 1411 aa18.43■□□□□ 0.54
SHMT2-212ENST00000554467 TRIM26Q12899 539 aaPredicted RBP18.42■□□□□ 0.54
SHMT2-212ENST00000554467 CADPSQ9ULU8 1353 aa18.42■□□□□ 0.54
SHMT2-212ENST00000554467 CUX1P39880 1505 aa18.42■□□□□ 0.54
SHMT2-212ENST00000554467 RANGAP1P46060 587 aaPredicted RBP18.41■□□□□ 0.54
SHMT2-212ENST00000554467 TTBK1Q5TCY1 1321 aaPredicted RBP18.4■□□□□ 0.54
SHMT2-212ENST00000554467 CEP162Q5TB80 1403 aa18.38■□□□□ 0.53
SHMT2-212ENST00000554467 NESP48681 1621 aa18.36■□□□□ 0.53
SHMT2-212ENST00000554467 BIVM-ERCC5R4GMW8 1640 aa18.35■□□□□ 0.53
SHMT2-212ENST00000554467 PELP1Q8IZL8 1130 aaKnown RBP18.35■□□□□ 0.53
SHMT2-212ENST00000554467 GOLGA3Q08378 1498 aa18.34■□□□□ 0.53
SHMT2-212ENST00000554467 TNIKQ9UKE5 1360 aa18.34■□□□□ 0.53
SHMT2-212ENST00000554467 RAPGEF2Q9Y4G8 1499 aa18.3■□□□□ 0.52
SHMT2-212ENST00000554467 CEP164Q9UPV0 1460 aa18.29■□□□□ 0.52
SHMT2-212ENST00000554467 FANCD2Q9BXW9 1451 aa18.26■□□□□ 0.51
SHMT2-212ENST00000554467 PRDM2Q13029 1718 aa18.26■□□□□ 0.51
SHMT2-212ENST00000554467 KIF21BO75037 1637 aa18.22■□□□□ 0.51
SHMT2-212ENST00000554467 KIF27Q86VH2 1401 aa18.19■□□□□ 0.5
SHMT2-212ENST00000554467 FGD5Q6ZNL6 1462 aa18.19■□□□□ 0.5
SHMT2-212ENST00000554467 CUX2O14529 1486 aa18.17■□□□□ 0.5
SHMT2-212ENST00000554467 CLIP1P30622 1438 aa18.15■□□□□ 0.5
SHMT2-212ENST00000554467 PRXQ9BXM0 1461 aa18.12■□□□□ 0.49
SHMT2-212ENST00000554467 RAD54L2Q9Y4B4 1467 aa18.11■□□□□ 0.49
SHMT2-212ENST00000554467 TOPBP1Q92547 1522 aa18.07■□□□□ 0.48
SHMT2-212ENST00000554467 SCAF1Q9H7N4 1312 aaKnown RBP18.06■□□□□ 0.48
SHMT2-212ENST00000554467 IGF1RP08069 1367 aa18.06■□□□□ 0.48
SHMT2-212ENST00000554467 LAMC3Q9Y6N6 1575 aa18.05■□□□□ 0.48
SHMT2-212ENST00000554467 POLA1P09884 1462 aaPredicted RBP18.04■□□□□ 0.48
SHMT2-212ENST00000554467 DNMBPQ6XZF7 1577 aa18.04■□□□□ 0.48
SHMT2-212ENST00000554467 URB2Q14146 1524 aaKnown RBP18.03■□□□□ 0.48
SHMT2-212ENST00000554467 ERICH3Q5RHP9 1530 aa18.02■□□□□ 0.47
SHMT2-212ENST00000554467 PDS5BQ9NTI5 1447 aa18■□□□□ 0.47
SHMT2-212ENST00000554467 CARMIL1Q5VZK9 1371 aa17.98■□□□□ 0.47
SHMT2-212ENST00000554467 KIF21AQ7Z4S6 1674 aa17.98■□□□□ 0.47
SHMT2-212ENST00000554467 VPS8Q8N3P4 1428 aa17.97■□□□□ 0.47
SHMT2-212ENST00000554467 TDRD9Q8NDG6 1382 aaKnown RBP17.95■□□□□ 0.46
SHMT2-212ENST00000554467 APLP2Q06481 763 aa17.94■□□□□ 0.46
SHMT2-212ENST00000554467 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.91■□□□□ 0.46
SHMT2-212ENST00000554467 ABCA10Q8WWZ4 1543 aa17.91■□□□□ 0.46
SHMT2-212ENST00000554467 ARAP1Q96P48 1450 aa17.91■□□□□ 0.46
SHMT2-212ENST00000554467 P3H3Q8IVL6 736 aa17.89■□□□□ 0.45
SHMT2-212ENST00000554467 ARHGAP35Q9NRY4 1499 aa17.85■□□□□ 0.45
SHMT2-212ENST00000554467 HNRNPUL2Q1KMD3 747 aaKnown RBP17.82■□□□□ 0.44
SHMT2-212ENST00000554467 KANK4Q5T7N3 995 aaPredicted RBP17.82■□□□□ 0.44
SHMT2-212ENST00000554467 CCER1Q8TC90 406 aaPredicted RBP17.79■□□□□ 0.44
SHMT2-212ENST00000554467 GAPVD1Q14C86 1478 aa17.78■□□□□ 0.44
SHMT2-212ENST00000554467 ATP1B4Q9UN42 357 aaPredicted RBP17.77■□□□□ 0.43
SHMT2-212ENST00000554467 WDR97A6NE52 1622 aa17.76■□□□□ 0.43
SHMT2-212ENST00000554467 AQRO60306 1485 aaKnown RBP eCLIP17.75■□□□□ 0.434e-7■■■■□ 22.4
SHMT2-212ENST00000554467 MRC2Q9UBG0 1479 aa17.75■□□□□ 0.43
SHMT2-212ENST00000554467 ERCC6Q03468 1493 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms