RNA–Protein interactions for RNA: ENST00000377387.5

SF1-203, Transcript of splicing factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SF1, Length 2,947 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-203ENST00000377387 NISCHQ9Y2I1 1504 aa36.92■■■■□ 3.5
SF1-203ENST00000377387 SHROOM4Q9ULL8 1493 aa32.1■■■□□ 2.73
SF1-203ENST00000377387 SUPT5HO00267 1087 aaKnown RBP31.57■■■□□ 2.64
SF1-203ENST00000377387 DCAF8L2P0C7V8 631 aa31.38■■■□□ 2.61
SF1-203ENST00000377387 CCDC180Q9P1Z9 1646 aa31.19■■■□□ 2.58
SF1-203ENST00000377387 ZCCHC6Q5VYS8 1495 aaKnown RBP31.13■■■□□ 2.57
SF1-203ENST00000377387 CHIC1Q5VXU3 224 aa30.51■■■□□ 2.48
SF1-203ENST00000377387 MYO15BQ96JP2 1530 aa30.39■■■□□ 2.45
SF1-203ENST00000377387 DCAF1Q9Y4B6 1507 aa29.98■■■□□ 2.39
SF1-203ENST00000377387 PCGF6Q9BYE7 350 aa29.93■■■□□ 2.38
SF1-203ENST00000377387 LOC105371045A0A1W2PR82 267 aa29.85■■■□□ 2.37
SF1-203ENST00000377387 HRCP23327 699 aa29.79■■■□□ 2.36
SF1-203ENST00000377387 SCRIBQ14160 1630 aa29.69■■■□□ 2.34
SF1-203ENST00000377387 ABCC9O60706 1549 aa29.69■■■□□ 2.34
SF1-203ENST00000377387 PPARGC1BQ86YN6 1023 aaKnown RBP29.44■■■□□ 2.3
SF1-203ENST00000377387 RSF1Q96T23 1441 aaPredicted RBP29.33■■■□□ 2.29
SF1-203ENST00000377387 FAM9AQ8IZU1 332 aaPredicted RBP29.26■■■□□ 2.27
SF1-203ENST00000377387 TRIM41Q8WV44 630 aa29.23■■■□□ 2.27
SF1-203ENST00000377387 EHMT2Q96KQ7 1210 aa29.22■■■□□ 2.27
SF1-203ENST00000377387 TRIM26Q12899 539 aaPredicted RBP29.09■■■□□ 2.25
SF1-203ENST00000377387 CECR2Q9BXF3 1484 aa29.07■■■□□ 2.24
SF1-203ENST00000377387 RB1CC1Q8TDY2 1594 aa29.05■■■□□ 2.24
SF1-203ENST00000377387 NACADO15069 1562 aa28.99■■■□□ 2.23
SF1-203ENST00000377387 MROH2BQ7Z745 1585 aa28.85■■■□□ 2.21
SF1-203ENST00000377387 WIZO95785 1651 aa28.69■■■□□ 2.18
SF1-203ENST00000377387 PABPN1Q86U42 306 aaKnown RBP eCLIP28.54■■■□□ 2.161e-6■□□□□ 9.3
SF1-203ENST00000377387 ZEB1P37275 1124 aaPredicted RBP28.39■■■□□ 2.14
SF1-203ENST00000377387 BAZ1AQ9NRL2 1556 aaPredicted RBP28.3■■■□□ 2.12
SF1-203ENST00000377387 UNC13AQ9UPW8 1703 aa28.28■■■□□ 2.12
SF1-203ENST00000377387 TTBK1Q5TCY1 1321 aaPredicted RBP28.26■■■□□ 2.11
SF1-203ENST00000377387 ABCC8Q09428 1581 aa28.15■■■□□ 2.1
SF1-203ENST00000377387 SMARCA4P51532 1647 aa28.14■■■□□ 2.1
SF1-203ENST00000377387 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.14■■■□□ 2.09
SF1-203ENST00000377387 CCDC88BA6NC98 1476 aa28.09■■■□□ 2.09
SF1-203ENST00000377387 EIF4G1Q04637 1599 aaKnown RBP28.04■■■□□ 2.08
SF1-203ENST00000377387 TOP2AP11388 1531 aaKnown RBP28.03■■■□□ 2.08
SF1-203ENST00000377387 CCER1Q8TC90 406 aaPredicted RBP28.02■■■□□ 2.08
SF1-203ENST00000377387 BICRAQ9NZM4 1560 aa27.97■■■□□ 2.07
SF1-203ENST00000377387 SMARCA2P51531 1590 aa27.95■■■□□ 2.07
SF1-203ENST00000377387 SOGA1O94964 1423 aa27.95■■■□□ 2.06
SF1-203ENST00000377387 UBTFP17480 764 aaKnown RBP27.92■■■□□ 2.06
SF1-203ENST00000377387 RUSC2Q8N2Y8 1516 aa27.82■■■□□ 2.04
SF1-203ENST00000377387 CEP162Q5TB80 1403 aa27.82■■■□□ 2.04
SF1-203ENST00000377387 CSRNP3Q8WYN3 585 aa27.81■■■□□ 2.04
SF1-203ENST00000377387 TNIKQ9UKE5 1360 aa27.67■■■□□ 2.02
SF1-203ENST00000377387 SCAF1Q9H7N4 1312 aaKnown RBP27.64■■■□□ 2.02
SF1-203ENST00000377387 WRNQ14191 1432 aaPredicted RBP eCLIP27.61■■■□□ 2.01
SF1-203ENST00000377387 RANGAP1P46060 587 aaPredicted RBP27.6■■■□□ 2.01
SF1-203ENST00000377387 ATAD2BQ9ULI0 1458 aa27.54■■■□□ 2
SF1-203ENST00000377387 EEA1Q15075 1411 aa27.52■■■□□ 2
SF1-203ENST00000377387 BAZ1BQ9UIG0 1483 aaKnown RBP27.49■■□□□ 1.99
SF1-203ENST00000377387 GOLGA3Q08378 1498 aa27.48■■□□□ 1.99
SF1-203ENST00000377387 DIEXFQ68CQ4 756 aaKnown RBP27.48■■□□□ 1.99
SF1-203ENST00000377387 HNRNPUL2Q1KMD3 747 aaKnown RBP27.45■■□□□ 1.98
SF1-203ENST00000377387 PEG3Q9GZU2 1588 aa27.4■■□□□ 1.98
SF1-203ENST00000377387 SYNJ1O43426 1573 aa27.38■■□□□ 1.97
SF1-203ENST00000377387 NEUROD1Q13562 356 aa27.33■■□□□ 1.97
SF1-203ENST00000377387 CEP164Q9UPV0 1460 aa27.29■■□□□ 1.96
SF1-203ENST00000377387 CLIP1P30622 1438 aa27.29■■□□□ 1.96
SF1-203ENST00000377387 ACIN1Q9UKV3 1341 aaKnown RBP27.27■■□□□ 1.96
SF1-203ENST00000377387 APLP2Q06481 763 aa27.27■■□□□ 1.96
SF1-203ENST00000377387 RAPGEF2Q9Y4G8 1499 aa27.2■■□□□ 1.94
SF1-203ENST00000377387 ZNF316A6NFI3 1004 aaPredicted RBP27.17■■□□□ 1.94
SF1-203ENST00000377387 KIF21BO75037 1637 aa27.11■■□□□ 1.93
SF1-203ENST00000377387 CENPBP07199 599 aaPredicted RBP27.09■■□□□ 1.93
SF1-203ENST00000377387 VPS8Q8N3P4 1428 aa27.09■■□□□ 1.93
SF1-203ENST00000377387 GTF3C3Q9Y5Q9 886 aa27.09■■□□□ 1.93
SF1-203ENST00000377387 YTHDC1Q96MU7 727 aaKnown RBP27.08■■□□□ 1.93
SF1-203ENST00000377387 NCAPD3P42695 1498 aa26.92■■□□□ 1.9
SF1-203ENST00000377387 PELP1Q8IZL8 1130 aaKnown RBP26.92■■□□□ 1.9
SF1-203ENST00000377387 TOP2BQ02880 1626 aa26.91■■□□□ 1.9
SF1-203ENST00000377387 MIER1Q8N108 512 aa26.91■■□□□ 1.9
SF1-203ENST00000377387 KANK4Q5T7N3 995 aaPredicted RBP26.87■■□□□ 1.89
SF1-203ENST00000377387 CUX1P39880 1505 aa26.82■■□□□ 1.88
SF1-203ENST00000377387 HMGXB3Q12766 1538 aa26.8■■□□□ 1.88
SF1-203ENST00000377387 ITGAEP38570 1179 aa26.77■■□□□ 1.88
SF1-203ENST00000377387 PRXQ9BXM0 1461 aa26.75■■□□□ 1.87
SF1-203ENST00000377387 BIVM-ERCC5R4GMW8 1640 aa26.73■■□□□ 1.87
SF1-203ENST00000377387 ARAP1Q96P48 1450 aa26.73■■□□□ 1.87
SF1-203ENST00000377387 CFTRP13569 1480 aa26.7■■□□□ 1.87
SF1-203ENST00000377387 KIF27Q86VH2 1401 aa26.69■■□□□ 1.86
SF1-203ENST00000377387 ERICH3Q5RHP9 1530 aa26.65■■□□□ 1.86
SF1-203ENST00000377387 DHX57Q6P158 1386 aaKnown RBP26.62■■□□□ 1.85
SF1-203ENST00000377387 CUX2O14529 1486 aa26.53■■□□□ 1.84
SF1-203ENST00000377387 CADPSQ9ULU8 1353 aa26.53■■□□□ 1.84
SF1-203ENST00000377387 CC2D2AQ9P2K1 1620 aa26.51■■□□□ 1.83
SF1-203ENST00000377387 ARHGAP35Q9NRY4 1499 aa26.5■■□□□ 1.83
SF1-203ENST00000377387 ATP1B4Q9UN42 357 aaPredicted RBP26.49■■□□□ 1.83
SF1-203ENST00000377387 P3H3Q8IVL6 736 aa26.49■■□□□ 1.83
SF1-203ENST00000377387 CCNB3Q8WWL7 1395 aa26.45■■□□□ 1.82
SF1-203ENST00000377387 IGF1RP08069 1367 aa26.43■■□□□ 1.82
SF1-203ENST00000377387 CLSPNQ9HAW4 1339 aa26.43■■□□□ 1.82
SF1-203ENST00000377387 RRBP1Q9P2E9 1410 aaKnown RBP26.42■■□□□ 1.82
SF1-203ENST00000377387 FGD5Q6ZNL6 1462 aa26.41■■□□□ 1.82
SF1-203ENST00000377387 DNAJC5BQ9UF47 199 aa26.41■■□□□ 1.82
SF1-203ENST00000377387 NESP48681 1621 aa26.4■■□□□ 1.82
SF1-203ENST00000377387 CARMIL1Q5VZK9 1371 aa26.36■■□□□ 1.81
SF1-203ENST00000377387 FAM50AQ14320 339 aaKnown RBP26.34■■□□□ 1.81
SF1-203ENST00000377387 FANCD2Q9BXW9 1451 aa26.31■■□□□ 1.8
SF1-203ENST00000377387 RAD54L2Q9Y4B4 1467 aa26.31■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms