RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 NISCHQ9Y2I1 1504 aa32.92■■■□□ 2.86
SHMT2-231ENST00000557433 CCDC180Q9P1Z9 1646 aa27.99■■■□□ 2.07
SHMT2-231ENST00000557433 ZCCHC6Q5VYS8 1495 aaKnown RBP27.95■■■□□ 2.06
SHMT2-231ENST00000557433 SHROOM4Q9ULL8 1493 aa27.9■■■□□ 2.06
SHMT2-231ENST00000557433 SUPT5HO00267 1087 aaKnown RBP27.58■■■□□ 2.01
SHMT2-231ENST00000557433 DCAF1Q9Y4B6 1507 aa27.23■■□□□ 1.95
SHMT2-231ENST00000557433 CHIC1Q5VXU3 224 aa27.16■■□□□ 1.94
SHMT2-231ENST00000557433 MYO15BQ96JP2 1530 aa27.03■■□□□ 1.92
SHMT2-231ENST00000557433 HRCP23327 699 aa26.98■■□□□ 1.91
SHMT2-231ENST00000557433 DCAF8L2P0C7V8 631 aa26.78■■□□□ 1.88
SHMT2-231ENST00000557433 PCGF6Q9BYE7 350 aa26.53■■□□□ 1.84
SHMT2-231ENST00000557433 ABCC9O60706 1549 aa26.44■■□□□ 1.82
SHMT2-231ENST00000557433 TRIM26Q12899 539 aaPredicted RBP26.19■■□□□ 1.78
SHMT2-231ENST00000557433 LOC105371045A0A1W2PR82 267 aa26.17■■□□□ 1.78
SHMT2-231ENST00000557433 RSF1Q96T23 1441 aaPredicted RBP26.12■■□□□ 1.77
SHMT2-231ENST00000557433 PPARGC1BQ86YN6 1023 aaKnown RBP26.02■■□□□ 1.76
SHMT2-231ENST00000557433 RB1CC1Q8TDY2 1594 aa26■■□□□ 1.75
SHMT2-231ENST00000557433 SCRIBQ14160 1630 aa25.98■■□□□ 1.75
SHMT2-231ENST00000557433 ZEB1P37275 1124 aaPredicted RBP25.96■■□□□ 1.75
SHMT2-231ENST00000557433 TRIM41Q8WV44 630 aa25.84■■□□□ 1.73
SHMT2-231ENST00000557433 NACADO15069 1562 aa25.77■■□□□ 1.72
SHMT2-231ENST00000557433 MROH2BQ7Z745 1585 aa25.49■■□□□ 1.67
SHMT2-231ENST00000557433 CECR2Q9BXF3 1484 aa25.47■■□□□ 1.67
SHMT2-231ENST00000557433 BAZ1AQ9NRL2 1556 aaPredicted RBP25.4■■□□□ 1.66
SHMT2-231ENST00000557433 FAM9AQ8IZU1 332 aaPredicted RBP25.39■■□□□ 1.66
SHMT2-231ENST00000557433 WIZO95785 1651 aa25.34■■□□□ 1.65
SHMT2-231ENST00000557433 EIF4G1Q04637 1599 aaKnown RBP25.31■■□□□ 1.64
SHMT2-231ENST00000557433 PELP1Q8IZL8 1130 aaKnown RBP25.27■■□□□ 1.64
SHMT2-231ENST00000557433 TOP2AP11388 1531 aaKnown RBP25.14■■□□□ 1.61
SHMT2-231ENST00000557433 WRNQ14191 1432 aaPredicted RBP eCLIP25.1■■□□□ 1.61
SHMT2-231ENST00000557433 SMARCA4P51532 1647 aa24.99■■□□□ 1.59
SHMT2-231ENST00000557433 EEA1Q15075 1411 aa24.99■■□□□ 1.59
SHMT2-231ENST00000557433 EHMT2Q96KQ7 1210 aa24.97■■□□□ 1.59
SHMT2-231ENST00000557433 SMARCA2P51531 1590 aa24.93■■□□□ 1.58
SHMT2-231ENST00000557433 SCAF1Q9H7N4 1312 aaKnown RBP24.92■■□□□ 1.58
SHMT2-231ENST00000557433 CCDC88BA6NC98 1476 aa24.92■■□□□ 1.58
SHMT2-231ENST00000557433 CCER1Q8TC90 406 aaPredicted RBP24.91■■□□□ 1.58
SHMT2-231ENST00000557433 TNIKQ9UKE5 1360 aa24.9■■□□□ 1.58
SHMT2-231ENST00000557433 CEP162Q5TB80 1403 aa24.85■■□□□ 1.57
SHMT2-231ENST00000557433 ABCC8Q09428 1581 aa24.84■■□□□ 1.57
SHMT2-231ENST00000557433 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.82■■□□□ 1.56
SHMT2-231ENST00000557433 ACIN1Q9UKV3 1341 aaKnown RBP24.72■■□□□ 1.55
SHMT2-231ENST00000557433 CSRNP3Q8WYN3 585 aa24.7■■□□□ 1.54
SHMT2-231ENST00000557433 UNC13AQ9UPW8 1703 aa24.7■■□□□ 1.54
SHMT2-231ENST00000557433 SOGA1O94964 1423 aa24.69■■□□□ 1.54
SHMT2-231ENST00000557433 GOLGA3Q08378 1498 aa24.69■■□□□ 1.54
SHMT2-231ENST00000557433 CENPBP07199 599 aaPredicted RBP24.65■■□□□ 1.54
SHMT2-231ENST00000557433 DIEXFQ68CQ4 756 aaKnown RBP24.65■■□□□ 1.54
SHMT2-231ENST00000557433 PEG3Q9GZU2 1588 aa24.63■■□□□ 1.53
SHMT2-231ENST00000557433 KIF21BO75037 1637 aa24.54■■□□□ 1.52
SHMT2-231ENST00000557433 CEP164Q9UPV0 1460 aa24.53■■□□□ 1.52
SHMT2-231ENST00000557433 UBTFP17480 764 aaKnown RBP24.52■■□□□ 1.52
SHMT2-231ENST00000557433 NEUROD1Q13562 356 aa24.51■■□□□ 1.51
SHMT2-231ENST00000557433 RUSC2Q8N2Y8 1516 aa24.5■■□□□ 1.51
SHMT2-231ENST00000557433 ZNF316A6NFI3 1004 aaPredicted RBP24.45■■□□□ 1.5
SHMT2-231ENST00000557433 BAZ1BQ9UIG0 1483 aaKnown RBP24.44■■□□□ 1.5
SHMT2-231ENST00000557433 BICRAQ9NZM4 1560 aa24.41■■□□□ 1.5
SHMT2-231ENST00000557433 SYNJ1O43426 1573 aa24.35■■□□□ 1.49
SHMT2-231ENST00000557433 CLIP1P30622 1438 aa24.34■■□□□ 1.49
SHMT2-231ENST00000557433 VPS8Q8N3P4 1428 aa24.34■■□□□ 1.49
SHMT2-231ENST00000557433 GTF3C3Q9Y5Q9 886 aa24.32■■□□□ 1.48
SHMT2-231ENST00000557433 TTBK1Q5TCY1 1321 aaPredicted RBP24.31■■□□□ 1.48
SHMT2-231ENST00000557433 ATAD2BQ9ULI0 1458 aa24.24■■□□□ 1.47
SHMT2-231ENST00000557433 MYT1Q01538 1121 aa24.2■■□□□ 1.46
SHMT2-231ENST00000557433 APLP2Q06481 763 aa24.18■■□□□ 1.46
SHMT2-231ENST00000557433 CLSPNQ9HAW4 1339 aa24.17■■□□□ 1.46
SHMT2-231ENST00000557433 TOP2BQ02880 1626 aa24.15■■□□□ 1.46
SHMT2-231ENST00000557433 RAPGEF2Q9Y4G8 1499 aa24.13■■□□□ 1.45
SHMT2-231ENST00000557433 ERICH3Q5RHP9 1530 aa24.12■■□□□ 1.45
SHMT2-231ENST00000557433 PABPN1Q86U42 306 aaKnown RBP eCLIP24.12■■□□□ 1.45
SHMT2-231ENST00000557433 HNRNPUL2Q1KMD3 747 aaKnown RBP24.09■■□□□ 1.45
SHMT2-231ENST00000557433 BIVM-ERCC5R4GMW8 1640 aa24.09■■□□□ 1.45
SHMT2-231ENST00000557433 PRXQ9BXM0 1461 aa23.99■■□□□ 1.43
SHMT2-231ENST00000557433 MIER1Q8N108 512 aa23.98■■□□□ 1.43
SHMT2-231ENST00000557433 ARAP1Q96P48 1450 aa23.89■■□□□ 1.42
SHMT2-231ENST00000557433 HMGXB3Q12766 1538 aa23.87■■□□□ 1.41
SHMT2-231ENST00000557433 DHX57Q6P158 1386 aaKnown RBP23.87■■□□□ 1.41
SHMT2-231ENST00000557433 RRBP1Q9P2E9 1410 aaKnown RBP23.86■■□□□ 1.41
SHMT2-231ENST00000557433 YTHDC1Q96MU7 727 aaKnown RBP23.86■■□□□ 1.41
SHMT2-231ENST00000557433 CUX2O14529 1486 aa23.85■■□□□ 1.41
SHMT2-231ENST00000557433 KIF27Q86VH2 1401 aa23.81■■□□□ 1.4
SHMT2-231ENST00000557433 NCAPD3P42695 1498 aa23.79■■□□□ 1.4
SHMT2-231ENST00000557433 CUX1P39880 1505 aa23.74■■□□□ 1.39
SHMT2-231ENST00000557433 MAP3K1Q13233 1512 aa23.68■■□□□ 1.38
SHMT2-231ENST00000557433 CCNB3Q8WWL7 1395 aa23.67■■□□□ 1.38
SHMT2-231ENST00000557433 CFTRP13569 1480 aa23.67■■□□□ 1.38
SHMT2-231ENST00000557433 RANGAP1P46060 587 aaPredicted RBP23.66■■□□□ 1.38
SHMT2-231ENST00000557433 KANK4Q5T7N3 995 aaPredicted RBP23.66■■□□□ 1.38
SHMT2-231ENST00000557433 ARHGAP35Q9NRY4 1499 aa23.63■■□□□ 1.37
SHMT2-231ENST00000557433 PRDM2Q13029 1718 aa23.57■■□□□ 1.36
SHMT2-231ENST00000557433 TIAM1Q13009 1591 aa23.51■■□□□ 1.35
SHMT2-231ENST00000557433 IGF1RP08069 1367 aa23.44■■□□□ 1.34
SHMT2-231ENST00000557433 RAB3GAP2Q9H2M9 1393 aa23.43■■□□□ 1.34
SHMT2-231ENST00000557433 SUPT16HQ9Y5B9 1047 aaKnown RBP23.42■■□□□ 1.34
SHMT2-231ENST00000557433 MAPKBP1O60336 1514 aa23.42■■□□□ 1.34
SHMT2-231ENST00000557433 FHAD1B1AJZ9 1412 aa23.41■■□□□ 1.34
SHMT2-231ENST00000557433 SETD5Q9C0A6 1442 aa23.41■■□□□ 1.34
SHMT2-231ENST00000557433 TIMELESSQ9UNS1 1208 aa23.4■■□□□ 1.34
SHMT2-231ENST00000557433 LRRC9Q6ZRR7 1453 aa23.39■■□□□ 1.34
SHMT2-231ENST00000557433 CARMIL1Q5VZK9 1371 aa23.36■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 141.7 ms