RNA–Protein interactions for RNA: ENST00000449049.7

SHMT2-203, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 2,121 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-203ENST00000449049 NISCHQ9Y2I1 1504 aa33.11■■■□□ 2.89
SHMT2-203ENST00000449049 CCDC180Q9P1Z9 1646 aa29.2■■■□□ 2.26
SHMT2-203ENST00000449049 ABCC9O60706 1549 aa27.91■■■□□ 2.06
SHMT2-203ENST00000449049 ZCCHC6Q5VYS8 1495 aaKnown RBP27.73■■■□□ 2.03
SHMT2-203ENST00000449049 DCAF1Q9Y4B6 1507 aa27.45■■□□□ 1.98
SHMT2-203ENST00000449049 MYO15BQ96JP2 1530 aa27.33■■□□□ 1.97
SHMT2-203ENST00000449049 DCAF8L2P0C7V8 631 aa27.3■■□□□ 1.96
SHMT2-203ENST00000449049 NACADO15069 1562 aa27.28■■□□□ 1.96
SHMT2-203ENST00000449049 RB1CC1Q8TDY2 1594 aa27.15■■□□□ 1.94
SHMT2-203ENST00000449049 SCRIBQ14160 1630 aa26.66■■□□□ 1.86
SHMT2-203ENST00000449049 UNC13AQ9UPW8 1703 aa26.58■■□□□ 1.85
SHMT2-203ENST00000449049 SHROOM4Q9ULL8 1493 aa26.48■■□□□ 1.83
SHMT2-203ENST00000449049 BICRAQ9NZM4 1560 aa26.34■■□□□ 1.81
SHMT2-203ENST00000449049 PABPN1Q86U42 306 aaKnown RBP eCLIP26.15■■□□□ 1.78
SHMT2-203ENST00000449049 CECR2Q9BXF3 1484 aa25.71■■□□□ 1.71
SHMT2-203ENST00000449049 BAZ1AQ9NRL2 1556 aaPredicted RBP25.62■■□□□ 1.69
SHMT2-203ENST00000449049 SMARCA4P51532 1647 aa25.57■■□□□ 1.68
SHMT2-203ENST00000449049 EIF4G1Q04637 1599 aaKnown RBP25.57■■□□□ 1.68
SHMT2-203ENST00000449049 MROH2BQ7Z745 1585 aa25.53■■□□□ 1.68
SHMT2-203ENST00000449049 RSF1Q96T23 1441 aaPredicted RBP25.45■■□□□ 1.66
SHMT2-203ENST00000449049 PEG3Q9GZU2 1588 aa25.33■■□□□ 1.65
SHMT2-203ENST00000449049 CC2D2AQ9P2K1 1620 aa25.3■■□□□ 1.64
SHMT2-203ENST00000449049 WIZO95785 1651 aa25.29■■□□□ 1.64
SHMT2-203ENST00000449049 SMARCA2P51531 1590 aa25.26■■□□□ 1.63
SHMT2-203ENST00000449049 ATAD2BQ9ULI0 1458 aa25.26■■□□□ 1.63
SHMT2-203ENST00000449049 SUPT5HO00267 1087 aaKnown RBP25.2■■□□□ 1.62
SHMT2-203ENST00000449049 NCAPD3P42695 1498 aa25.15■■□□□ 1.62
SHMT2-203ENST00000449049 HMGXB3Q12766 1538 aa25.11■■□□□ 1.61
SHMT2-203ENST00000449049 BAZ1BQ9UIG0 1483 aaKnown RBP25.08■■□□□ 1.6
SHMT2-203ENST00000449049 TOP2AP11388 1531 aaKnown RBP25.07■■□□□ 1.6
SHMT2-203ENST00000449049 DNAJC5BQ9UF47 199 aa25.04■■□□□ 1.6
SHMT2-203ENST00000449049 CCDC88BA6NC98 1476 aa24.74■■□□□ 1.55
SHMT2-203ENST00000449049 CFTRP13569 1480 aa24.44■■□□□ 1.5
SHMT2-203ENST00000449049 CADPSQ9ULU8 1353 aa24.43■■□□□ 1.5
SHMT2-203ENST00000449049 LAMC3Q9Y6N6 1575 aa24.4■■□□□ 1.5
SHMT2-203ENST00000449049 NESP48681 1621 aa24.35■■□□□ 1.49
SHMT2-203ENST00000449049 PRDM2Q13029 1718 aa24.35■■□□□ 1.49
SHMT2-203ENST00000449049 PDS5BQ9NTI5 1447 aa24.17■■□□□ 1.46
SHMT2-203ENST00000449049 FANCD2Q9BXW9 1451 aa24.16■■□□□ 1.46
SHMT2-203ENST00000449049 KIF21AQ7Z4S6 1674 aa24.11■■□□□ 1.45
SHMT2-203ENST00000449049 CEP164Q9UPV0 1460 aa24.08■■□□□ 1.44
SHMT2-203ENST00000449049 ABCC8Q09428 1581 aa24.04■■□□□ 1.44
SHMT2-203ENST00000449049 ERCC6Q03468 1493 aa23.99■■□□□ 1.43
SHMT2-203ENST00000449049 WRNQ14191 1432 aaPredicted RBP eCLIP23.97■■□□□ 1.43
SHMT2-203ENST00000449049 CUX1P39880 1505 aa23.92■■□□□ 1.42
SHMT2-203ENST00000449049 CHIC1Q5VXU3 224 aa23.92■■□□□ 1.42
SHMT2-203ENST00000449049 MRC2Q9UBG0 1479 aa23.91■■□□□ 1.42
SHMT2-203ENST00000449049 SYNJ1O43426 1573 aa23.91■■□□□ 1.42
SHMT2-203ENST00000449049 URB2Q14146 1524 aaKnown RBP23.9■■□□□ 1.42
SHMT2-203ENST00000449049 DNMBPQ6XZF7 1577 aa23.89■■□□□ 1.42
SHMT2-203ENST00000449049 BIVM-ERCC5R4GMW8 1640 aa23.89■■□□□ 1.42
SHMT2-203ENST00000449049 THOC2Q8NI27 1593 aaKnown RBP23.89■■□□□ 1.41
SHMT2-203ENST00000449049 TOP2BQ02880 1626 aa23.88■■□□□ 1.41
SHMT2-203ENST00000449049 TOPBP1Q92547 1522 aa23.86■■□□□ 1.41
SHMT2-203ENST00000449049 WDR62O43379 1518 aa23.84■■□□□ 1.41
SHMT2-203ENST00000449049 TRIM41Q8WV44 630 aa23.78■■□□□ 1.4
SHMT2-203ENST00000449049 FGD5Q6ZNL6 1462 aa23.73■■□□□ 1.39
SHMT2-203ENST00000449049 POLA1P09884 1462 aaPredicted RBP23.7■■□□□ 1.38
SHMT2-203ENST00000449049 CUX2O14529 1486 aa23.61■■□□□ 1.37
SHMT2-203ENST00000449049 SOGA1O94964 1423 aa23.58■■□□□ 1.37
SHMT2-203ENST00000449049 RAD54L2Q9Y4B4 1467 aa23.57■■□□□ 1.36
SHMT2-203ENST00000449049 TARBP1Q13395 1621 aaKnown RBP23.57■■□□□ 1.36
SHMT2-203ENST00000449049 WDR97A6NE52 1622 aa23.56■■□□□ 1.36
SHMT2-203ENST00000449049 IFT140Q96RY7 1462 aa23.54■■□□□ 1.36
SHMT2-203ENST00000449049 ABCA10Q8WWZ4 1543 aa23.53■■□□□ 1.36
SHMT2-203ENST00000449049 KIF27Q86VH2 1401 aa23.41■■□□□ 1.34
SHMT2-203ENST00000449049 ABCA5Q8WWZ7 1642 aa23.41■■□□□ 1.34
SHMT2-203ENST00000449049 RUSC2Q8N2Y8 1516 aa23.41■■□□□ 1.34
SHMT2-203ENST00000449049 EEA1Q15075 1411 aa23.39■■□□□ 1.33
SHMT2-203ENST00000449049 ZNF608Q9ULD9 1512 aaPredicted RBP23.39■■□□□ 1.33
SHMT2-203ENST00000449049 TDRD9Q8NDG6 1382 aaKnown RBP23.36■■□□□ 1.33
SHMT2-203ENST00000449049 EIF4G3O43432 1585 aaKnown RBP23.35■■□□□ 1.33
SHMT2-203ENST00000449049 GAPVD1Q14C86 1478 aa23.33■■□□□ 1.33
SHMT2-203ENST00000449049 AQRO60306 1485 aaKnown RBP eCLIP23.31■■□□□ 1.324e-7■■■■□ 20.7
SHMT2-203ENST00000449049 PBRM1Q86U86 1689 aa23.29■■□□□ 1.32
SHMT2-203ENST00000449049 ERICH3Q5RHP9 1530 aa23.27■■□□□ 1.32
SHMT2-203ENST00000449049 FAM9AQ8IZU1 332 aaPredicted RBP23.26■■□□□ 1.31
SHMT2-203ENST00000449049 GRIN2BQ13224 1484 aa23.25■■□□□ 1.31
SHMT2-203ENST00000449049 IGF1RP08069 1367 aa23.24■■□□□ 1.31
SHMT2-203ENST00000449049 CSRNP3Q8WYN3 585 aa23.23■■□□□ 1.31
SHMT2-203ENST00000449049 CUL7Q14999 1698 aa23.19■■□□□ 1.3
SHMT2-203ENST00000449049 PRXQ9BXM0 1461 aa23.15■■□□□ 1.3
SHMT2-203ENST00000449049 SNAPC4Q5SXM2 1469 aa23.14■■□□□ 1.29
SHMT2-203ENST00000449049 ADAMTS12P58397 1594 aa23.13■■□□□ 1.29
SHMT2-203ENST00000449049 KIF21BO75037 1637 aa23.13■■□□□ 1.29
SHMT2-203ENST00000449049 MAGI1Q96QZ7 1491 aaPredicted RBP23.13■■□□□ 1.29
SHMT2-203ENST00000449049 CARMIL1Q5VZK9 1371 aa23.11■■□□□ 1.29
SHMT2-203ENST00000449049 FHAD1B1AJZ9 1412 aa23.08■■□□□ 1.29
SHMT2-203ENST00000449049 RAPGEF2Q9Y4G8 1499 aa23.06■■□□□ 1.28
SHMT2-203ENST00000449049 SYNJ2O15056 1496 aa23.03■■□□□ 1.28
SHMT2-203ENST00000449049 GOLGA3Q08378 1498 aa23.01■■□□□ 1.27
SHMT2-203ENST00000449049 GRIN2AQ12879 1464 aa22.96■■□□□ 1.27
SHMT2-203ENST00000449049 CHD1O14646 1710 aa22.94■■□□□ 1.26
SHMT2-203ENST00000449049 LOC105371045A0A1W2PR82 267 aa22.91■■□□□ 1.26
SHMT2-203ENST00000449049 CHMP7Q8WUX9 453 aaPredicted RBP22.91■■□□□ 1.26
SHMT2-203ENST00000449049 EHMT2Q96KQ7 1210 aa22.89■■□□□ 1.25
SHMT2-203ENST00000449049 FBLN2P98095 1184 aa22.85■■□□□ 1.25
SHMT2-203ENST00000449049 CTTNBP2Q8WZ74 1663 aa22.85■■□□□ 1.25
SHMT2-203ENST00000449049 NUP160Q12769 1436 aa22.84■■□□□ 1.25
SHMT2-203ENST00000449049 CEP170Q5SW79 1584 aa22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms