RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 NISCHQ9Y2I1 1504 aa34.51■■■■□ 3.11
SHMT2-217ENST00000555116 CCDC180Q9P1Z9 1646 aa30.68■■■□□ 2.5
SHMT2-217ENST00000555116 ABCC9O60706 1549 aa29.89■■■□□ 2.38
SHMT2-217ENST00000555116 RB1CC1Q8TDY2 1594 aa28.8■■■□□ 2.2
SHMT2-217ENST00000555116 NACADO15069 1562 aa28.8■■■□□ 2.2
SHMT2-217ENST00000555116 ZCCHC6Q5VYS8 1495 aaKnown RBP28.77■■■□□ 2.2
SHMT2-217ENST00000555116 DCAF8L2P0C7V8 631 aa28.72■■■□□ 2.19
SHMT2-217ENST00000555116 MYO15BQ96JP2 1530 aa28.65■■■□□ 2.18
SHMT2-217ENST00000555116 DCAF1Q9Y4B6 1507 aa28.56■■■□□ 2.16
SHMT2-217ENST00000555116 UNC13AQ9UPW8 1703 aa28.24■■■□□ 2.11
SHMT2-217ENST00000555116 BICRAQ9NZM4 1560 aa27.97■■■□□ 2.07
SHMT2-217ENST00000555116 SCRIBQ14160 1630 aa27.97■■■□□ 2.07
SHMT2-217ENST00000555116 PABPN1Q86U42 306 aaKnown RBP eCLIP27.93■■■□□ 2.06
SHMT2-217ENST00000555116 SHROOM4Q9ULL8 1493 aa27.63■■■□□ 2.01
SHMT2-217ENST00000555116 DNAJC5BQ9UF47 199 aa27.39■■□□□ 1.98
SHMT2-217ENST00000555116 EIF4G1Q04637 1599 aaKnown RBP27.19■■□□□ 1.94
SHMT2-217ENST00000555116 CC2D2AQ9P2K1 1620 aa27.07■■□□□ 1.92
SHMT2-217ENST00000555116 CECR2Q9BXF3 1484 aa26.89■■□□□ 1.89
SHMT2-217ENST00000555116 SMARCA4P51532 1647 aa26.78■■□□□ 1.88
SHMT2-217ENST00000555116 BAZ1AQ9NRL2 1556 aaPredicted RBP26.73■■□□□ 1.87
SHMT2-217ENST00000555116 MROH2BQ7Z745 1585 aa26.6■■□□□ 1.85
SHMT2-217ENST00000555116 ATAD2BQ9ULI0 1458 aa26.59■■□□□ 1.85
SHMT2-217ENST00000555116 NCAPD3P42695 1498 aa26.56■■□□□ 1.84
SHMT2-217ENST00000555116 SMARCA2P51531 1590 aa26.56■■□□□ 1.84
SHMT2-217ENST00000555116 PEG3Q9GZU2 1588 aa26.52■■□□□ 1.84
SHMT2-217ENST00000555116 HMGXB3Q12766 1538 aa26.45■■□□□ 1.82
SHMT2-217ENST00000555116 BAZ1BQ9UIG0 1483 aaKnown RBP26.36■■□□□ 1.81
SHMT2-217ENST00000555116 WIZO95785 1651 aa26.34■■□□□ 1.81
SHMT2-217ENST00000555116 RSF1Q96T23 1441 aaPredicted RBP26.31■■□□□ 1.8
SHMT2-217ENST00000555116 TOP2AP11388 1531 aaKnown RBP26.04■■□□□ 1.76
SHMT2-217ENST00000555116 NESP48681 1621 aa25.91■■□□□ 1.74
SHMT2-217ENST00000555116 LAMC3Q9Y6N6 1575 aa25.85■■□□□ 1.73
SHMT2-217ENST00000555116 CADPSQ9ULU8 1353 aa25.78■■□□□ 1.72
SHMT2-217ENST00000555116 CCDC88BA6NC98 1476 aa25.73■■□□□ 1.71
SHMT2-217ENST00000555116 ERCC6Q03468 1493 aa25.73■■□□□ 1.71
SHMT2-217ENST00000555116 CFTRP13569 1480 aa25.66■■□□□ 1.7
SHMT2-217ENST00000555116 SUPT5HO00267 1087 aaKnown RBP25.66■■□□□ 1.7
SHMT2-217ENST00000555116 KIF21AQ7Z4S6 1674 aa25.64■■□□□ 1.7
SHMT2-217ENST00000555116 PDS5BQ9NTI5 1447 aa25.64■■□□□ 1.69
SHMT2-217ENST00000555116 PRDM2Q13029 1718 aa25.54■■□□□ 1.68
SHMT2-217ENST00000555116 THOC2Q8NI27 1593 aaKnown RBP25.53■■□□□ 1.68
SHMT2-217ENST00000555116 FANCD2Q9BXW9 1451 aa25.49■■□□□ 1.67
SHMT2-217ENST00000555116 CUX2O14529 1486 aa25.46■■□□□ 1.67
SHMT2-217ENST00000555116 CEP164Q9UPV0 1460 aa25.44■■□□□ 1.66
SHMT2-217ENST00000555116 MRC2Q9UBG0 1479 aa25.4■■□□□ 1.66
SHMT2-217ENST00000555116 WDR62O43379 1518 aa25.33■■□□□ 1.65
SHMT2-217ENST00000555116 URB2Q14146 1524 aaKnown RBP25.25■■□□□ 1.63
SHMT2-217ENST00000555116 TOPBP1Q92547 1522 aa25.11■■□□□ 1.61
SHMT2-217ENST00000555116 DNMBPQ6XZF7 1577 aa25.09■■□□□ 1.61
SHMT2-217ENST00000555116 ABCC8Q09428 1581 aa25.08■■□□□ 1.61
SHMT2-217ENST00000555116 CUX1P39880 1505 aa24.95■■□□□ 1.59
SHMT2-217ENST00000555116 IFT140Q96RY7 1462 aa24.91■■□□□ 1.58
SHMT2-217ENST00000555116 POLA1P09884 1462 aaPredicted RBP24.89■■□□□ 1.58
SHMT2-217ENST00000555116 TARBP1Q13395 1621 aaKnown RBP24.85■■□□□ 1.57
SHMT2-217ENST00000555116 FGD5Q6ZNL6 1462 aa24.84■■□□□ 1.57
SHMT2-217ENST00000555116 ZNF608Q9ULD9 1512 aaPredicted RBP24.8■■□□□ 1.56
SHMT2-217ENST00000555116 WRNQ14191 1432 aaPredicted RBP eCLIP24.79■■□□□ 1.56
SHMT2-217ENST00000555116 RAD54L2Q9Y4B4 1467 aa24.78■■□□□ 1.56
SHMT2-217ENST00000555116 BIVM-ERCC5R4GMW8 1640 aa24.78■■□□□ 1.56
SHMT2-217ENST00000555116 SOGA1O94964 1423 aa24.77■■□□□ 1.56
SHMT2-217ENST00000555116 SYNJ1O43426 1573 aa24.77■■□□□ 1.56
SHMT2-217ENST00000555116 TOP2BQ02880 1626 aa24.76■■□□□ 1.55
SHMT2-217ENST00000555116 EIF4G3O43432 1585 aaKnown RBP24.72■■□□□ 1.55
SHMT2-217ENST00000555116 WDR97A6NE52 1622 aa24.69■■□□□ 1.54
SHMT2-217ENST00000555116 AQRO60306 1485 aaKnown RBP eCLIP24.66■■□□□ 1.544e-7■■■■□ 20.7
SHMT2-217ENST00000555116 TDRD9Q8NDG6 1382 aaKnown RBP24.62■■□□□ 1.53
SHMT2-217ENST00000555116 ABCA10Q8WWZ4 1543 aa24.61■■□□□ 1.53
SHMT2-217ENST00000555116 DNAJC5Q9H3Z4 198 aa24.58■■□□□ 1.53
SHMT2-217ENST00000555116 ABCA5Q8WWZ7 1642 aa24.53■■□□□ 1.52
SHMT2-217ENST00000555116 GAPVD1Q14C86 1478 aa24.49■■□□□ 1.51
SHMT2-217ENST00000555116 PBRM1Q86U86 1689 aa24.49■■□□□ 1.51
SHMT2-217ENST00000555116 GRIN2BQ13224 1484 aa24.48■■□□□ 1.51
SHMT2-217ENST00000555116 SNAPC4Q5SXM2 1469 aa24.44■■□□□ 1.5
SHMT2-217ENST00000555116 CHD1O14646 1710 aa24.43■■□□□ 1.5
SHMT2-217ENST00000555116 MAGI1Q96QZ7 1491 aaPredicted RBP24.41■■□□□ 1.5
SHMT2-217ENST00000555116 OSCARQ8IYS5 282 aa24.38■■□□□ 1.49
SHMT2-217ENST00000555116 SYNJ2O15056 1496 aa24.31■■□□□ 1.48
SHMT2-217ENST00000555116 ERICH3Q5RHP9 1530 aa24.31■■□□□ 1.48
SHMT2-217ENST00000555116 FBLN2P98095 1184 aa24.3■■□□□ 1.48
SHMT2-217ENST00000555116 ADAMTS12P58397 1594 aa24.28■■□□□ 1.48
SHMT2-217ENST00000555116 KIF27Q86VH2 1401 aa24.26■■□□□ 1.47
SHMT2-217ENST00000555116 CHMP7Q8WUX9 453 aaPredicted RBP24.26■■□□□ 1.47
SHMT2-217ENST00000555116 TRIM41Q8WV44 630 aa24.22■■□□□ 1.47
SHMT2-217ENST00000555116 FHAD1B1AJZ9 1412 aa24.21■■□□□ 1.47
SHMT2-217ENST00000555116 GRIN2AQ12879 1464 aa24.17■■□□□ 1.46
SHMT2-217ENST00000555116 IGF1RP08069 1367 aa24.17■■□□□ 1.46
SHMT2-217ENST00000555116 CLASP1Q7Z460 1538 aa24.14■■□□□ 1.45
SHMT2-217ENST00000555116 CUL7Q14999 1698 aa24.12■■□□□ 1.45
SHMT2-217ENST00000555116 RUSC2Q8N2Y8 1516 aa24.11■■□□□ 1.45
SHMT2-217ENST00000555116 CEP170Q5SW79 1584 aa24.07■■□□□ 1.44
SHMT2-217ENST00000555116 NUP160Q12769 1436 aa24.07■■□□□ 1.44
SHMT2-217ENST00000555116 RIMBP3CA6NJZ7 1639 aa24.05■■□□□ 1.44
SHMT2-217ENST00000555116 RIMBP3BA6NNM3 1639 aa24.05■■□□□ 1.44
SHMT2-217ENST00000555116 RIMBP3Q9UFD9 1639 aa24.05■■□□□ 1.44
SHMT2-217ENST00000555116 ARHGEF11O15085 1522 aa24.03■■□□□ 1.44
SHMT2-217ENST00000555116 CHIC1Q5VXU3 224 aa24.02■■□□□ 1.44
SHMT2-217ENST00000555116 CARMIL1Q5VZK9 1371 aa24.01■■□□□ 1.43
SHMT2-217ENST00000555116 SHROOM2Q13796 1616 aa23.91■■□□□ 1.42
SHMT2-217ENST00000555116 RAPGEF2Q9Y4G8 1499 aa23.88■■□□□ 1.41
SHMT2-217ENST00000555116 ARAP1Q96P48 1450 aa23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms