RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 NISCHQ9Y2I1 1504 aa34.02■■■■□ 3.04
TRIM28-211ENST00000597968 CCDC180Q9P1Z9 1646 aa30.54■■■□□ 2.48
TRIM28-211ENST00000597968 ABCC9O60706 1549 aa30.31■■■□□ 2.44
TRIM28-211ENST00000597968 RB1CC1Q8TDY2 1594 aa29.03■■■□□ 2.24
TRIM28-211ENST00000597968 NACADO15069 1562 aa28.89■■■□□ 2.22
TRIM28-211ENST00000597968 MYO15BQ96JP2 1530 aa28.62■■■□□ 2.17
TRIM28-211ENST00000597968 DCAF8L2P0C7V8 631 aa28.54■■■□□ 2.16
TRIM28-211ENST00000597968 DNAJC5BQ9UF47 199 aa28.34■■■□□ 2.13
TRIM28-211ENST00000597968 DCAF1Q9Y4B6 1507 aa28.23■■■□□ 2.11
TRIM28-211ENST00000597968 ZCCHC6Q5VYS8 1495 aaKnown RBP28.21■■■□□ 2.11
TRIM28-211ENST00000597968 PABPN1Q86U42 306 aaKnown RBP eCLIP28.2■■■□□ 2.1
TRIM28-211ENST00000597968 UNC13AQ9UPW8 1703 aa28.2■■■□□ 2.1
TRIM28-211ENST00000597968 BICRAQ9NZM4 1560 aa28.09■■■□□ 2.09
TRIM28-211ENST00000597968 SHROOM4Q9ULL8 1493 aa27.97■■■□□ 2.07
TRIM28-211ENST00000597968 SCRIBQ14160 1630 aa27.66■■■□□ 2.02
TRIM28-211ENST00000597968 EIF4G1Q04637 1599 aaKnown RBP27.43■■□□□ 1.98
TRIM28-211ENST00000597968 CC2D2AQ9P2K1 1620 aa27.43■■□□□ 1.98
TRIM28-211ENST00000597968 CECR2Q9BXF3 1484 aa27.38■■□□□ 1.97
TRIM28-211ENST00000597968 NCAPD3P42695 1498 aa26.68■■□□□ 1.86
TRIM28-211ENST00000597968 ATAD2BQ9ULI0 1458 aa26.54■■□□□ 1.84
TRIM28-211ENST00000597968 SMARCA2P51531 1590 aa26.51■■□□□ 1.83
TRIM28-211ENST00000597968 SMARCA4P51532 1647 aa26.49■■□□□ 1.83
TRIM28-211ENST00000597968 HMGXB3Q12766 1538 aa26.47■■□□□ 1.83
TRIM28-211ENST00000597968 BAZ1AQ9NRL2 1556 aaPredicted RBP26.44■■□□□ 1.82
TRIM28-211ENST00000597968 PEG3Q9GZU2 1588 aa26.33■■□□□ 1.81
TRIM28-211ENST00000597968 CUX2O14529 1486 aa26.28■■□□□ 1.8
TRIM28-211ENST00000597968 BAZ1BQ9UIG0 1483 aaKnown RBP26.27■■□□□ 1.8
TRIM28-211ENST00000597968 ERCC6Q03468 1493 aa26.23■■□□□ 1.79
TRIM28-211ENST00000597968 MROH2BQ7Z745 1585 aa26.13■■□□□ 1.77
TRIM28-211ENST00000597968 DNAJC5Q9H3Z4 198 aa26.12■■□□□ 1.77
TRIM28-211ENST00000597968 LAMC3Q9Y6N6 1575 aa26.04■■□□□ 1.76
TRIM28-211ENST00000597968 NESP48681 1621 aa26.03■■□□□ 1.76
TRIM28-211ENST00000597968 PDS5BQ9NTI5 1447 aa25.91■■□□□ 1.74
TRIM28-211ENST00000597968 CADPSQ9ULU8 1353 aa25.83■■□□□ 1.73
TRIM28-211ENST00000597968 THOC2Q8NI27 1593 aaKnown RBP25.83■■□□□ 1.73
TRIM28-211ENST00000597968 WIZO95785 1651 aa25.77■■□□□ 1.72
TRIM28-211ENST00000597968 KIF21AQ7Z4S6 1674 aa25.71■■□□□ 1.71
TRIM28-211ENST00000597968 RSF1Q96T23 1441 aaPredicted RBP25.67■■□□□ 1.7
TRIM28-211ENST00000597968 MRC2Q9UBG0 1479 aa25.61■■□□□ 1.69
TRIM28-211ENST00000597968 TOP2AP11388 1531 aaKnown RBP25.58■■□□□ 1.68
TRIM28-211ENST00000597968 CFTRP13569 1480 aa25.56■■□□□ 1.68
TRIM28-211ENST00000597968 WDR62O43379 1518 aa25.56■■□□□ 1.68
TRIM28-211ENST00000597968 CEP164Q9UPV0 1460 aa25.53■■□□□ 1.68
TRIM28-211ENST00000597968 FANCD2Q9BXW9 1451 aa25.49■■□□□ 1.67
TRIM28-211ENST00000597968 CCDC88BA6NC98 1476 aa25.24■■□□□ 1.63
TRIM28-211ENST00000597968 URB2Q14146 1524 aaKnown RBP25.23■■□□□ 1.63
TRIM28-211ENST00000597968 PRDM2Q13029 1718 aa25.23■■□□□ 1.63
TRIM28-211ENST00000597968 ABCC8Q09428 1581 aa25.1■■□□□ 1.61
TRIM28-211ENST00000597968 IFT140Q96RY7 1462 aa25.05■■□□□ 1.6
TRIM28-211ENST00000597968 OSCARQ8IYS5 282 aa25.05■■□□□ 1.6
TRIM28-211ENST00000597968 TOPBP1Q92547 1522 aa25.01■■□□□ 1.59
TRIM28-211ENST00000597968 DNMBPQ6XZF7 1577 aa24.94■■□□□ 1.58
TRIM28-211ENST00000597968 ZNF608Q9ULD9 1512 aaPredicted RBP24.87■■□□□ 1.57
TRIM28-211ENST00000597968 TRIM41Q8WV44 630 aa24.85■■□□□ 1.57
TRIM28-211ENST00000597968 EIF4G3O43432 1585 aaKnown RBP24.77■■□□□ 1.56
TRIM28-211ENST00000597968 TARBP1Q13395 1621 aaKnown RBP24.77■■□□□ 1.56
TRIM28-211ENST00000597968 POLA1P09884 1462 aaPredicted RBP24.76■■□□□ 1.55
TRIM28-211ENST00000597968 WDR97A6NE52 1622 aa24.68■■□□□ 1.54
TRIM28-211ENST00000597968 AQRO60306 1485 aaKnown RBP eCLIP24.68■■□□□ 1.543e-12■■■■■ 38.4
TRIM28-211ENST00000597968 SOGA1O94964 1423 aa24.66■■□□□ 1.54
TRIM28-211ENST00000597968 RIMBP3CA6NJZ7 1639 aa24.61■■□□□ 1.53
TRIM28-211ENST00000597968 RIMBP3BA6NNM3 1639 aa24.61■■□□□ 1.53
TRIM28-211ENST00000597968 RIMBP3Q9UFD9 1639 aa24.61■■□□□ 1.53
TRIM28-211ENST00000597968 RAD54L2Q9Y4B4 1467 aa24.59■■□□□ 1.53
TRIM28-211ENST00000597968 FGD5Q6ZNL6 1462 aa24.58■■□□□ 1.53
TRIM28-211ENST00000597968 ARHGEF11O15085 1522 aa24.58■■□□□ 1.53
TRIM28-211ENST00000597968 CUX1P39880 1505 aa24.56■■□□□ 1.52
TRIM28-211ENST00000597968 TDRD9Q8NDG6 1382 aaKnown RBP24.54■■□□□ 1.52
TRIM28-211ENST00000597968 CHD1O14646 1710 aa24.51■■□□□ 1.51
TRIM28-211ENST00000597968 MAGI1Q96QZ7 1491 aaPredicted RBP24.49■■□□□ 1.51
TRIM28-211ENST00000597968 FBLN2P98095 1184 aa24.48■■□□□ 1.51
TRIM28-211ENST00000597968 GRIN2BQ13224 1484 aa24.47■■□□□ 1.51
TRIM28-211ENST00000597968 SUPT5HO00267 1087 aaKnown RBP24.46■■□□□ 1.51
TRIM28-211ENST00000597968 SNAPC4Q5SXM2 1469 aa24.45■■□□□ 1.5
TRIM28-211ENST00000597968 CHMP7Q8WUX9 453 aaPredicted RBP24.41■■□□□ 1.5
TRIM28-211ENST00000597968 ABCA10Q8WWZ4 1543 aa24.39■■□□□ 1.49
TRIM28-211ENST00000597968 SYNJ2O15056 1496 aa24.38■■□□□ 1.49
TRIM28-211ENST00000597968 GAPVD1Q14C86 1478 aa24.37■■□□□ 1.49
TRIM28-211ENST00000597968 SYNJ1O43426 1573 aa24.37■■□□□ 1.49
TRIM28-211ENST00000597968 CYB5RLQ6IPT4 315 aa24.36■■□□□ 1.49
TRIM28-211ENST00000597968 CLASP1Q7Z460 1538 aa24.34■■□□□ 1.49
TRIM28-211ENST00000597968 ARAP1Q96P48 1450 aa24.32■■□□□ 1.48
TRIM28-211ENST00000597968 WRNQ14191 1432 aaPredicted RBP eCLIP24.31■■□□□ 1.48
TRIM28-211ENST00000597968 ABCA5Q8WWZ7 1642 aa24.29■■□□□ 1.48
TRIM28-211ENST00000597968 PBRM1Q86U86 1689 aa24.27■■□□□ 1.48
TRIM28-211ENST00000597968 TOP2BQ02880 1626 aa24.24■■□□□ 1.47
TRIM28-211ENST00000597968 BIVM-ERCC5R4GMW8 1640 aa24.23■■□□□ 1.47
TRIM28-211ENST00000597968 GRIN2AQ12879 1464 aa24.13■■□□□ 1.45
TRIM28-211ENST00000597968 ERICH3Q5RHP9 1530 aa24.1■■□□□ 1.45
TRIM28-211ENST00000597968 FHAD1B1AJZ9 1412 aa24.1■■□□□ 1.45
TRIM28-211ENST00000597968 ADAMTS12P58397 1594 aa24.09■■□□□ 1.45
TRIM28-211ENST00000597968 NUP160Q12769 1436 aa24.08■■□□□ 1.44
TRIM28-211ENST00000597968 TRHP20396 242 aaPredicted RBP24.06■■□□□ 1.44
TRIM28-211ENST00000597968 CEP170Q5SW79 1584 aa23.97■■□□□ 1.43
TRIM28-211ENST00000597968 SHROOM2Q13796 1616 aa23.93■■□□□ 1.42
TRIM28-211ENST00000597968 ERCC6L2Q5T890 1561 aa23.83■■□□□ 1.41
TRIM28-211ENST00000597968 KIF27Q86VH2 1401 aa23.82■■□□□ 1.4
TRIM28-211ENST00000597968 JPH4Q96JJ6 628 aa23.81■■□□□ 1.4
TRIM28-211ENST00000597968 PRG4Q92954 1404 aaPredicted RBP23.78■■□□□ 1.4
TRIM28-211ENST00000597968 IGF1RP08069 1367 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms