RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 NISCHQ9Y2I1 1504 aa23.15■■□□□ 1.3
SHMT2-201ENST00000328923 PELP1Q8IZL8 1130 aaKnown RBP20.74■□□□□ 0.91
SHMT2-201ENST00000328923 CCDC180Q9P1Z9 1646 aa20.3■□□□□ 0.84
SHMT2-201ENST00000328923 HRCP23327 699 aa20.2■□□□□ 0.82
SHMT2-201ENST00000328923 MYT1Q01538 1121 aa20.17■□□□□ 0.82
SHMT2-201ENST00000328923 PPARGC1BQ86YN6 1023 aaKnown RBP19.84■□□□□ 0.77
SHMT2-201ENST00000328923 ABCC9O60706 1549 aa19.83■□□□□ 0.76
SHMT2-201ENST00000328923 SCAF1Q9H7N4 1312 aaKnown RBP19.68■□□□□ 0.74
SHMT2-201ENST00000328923 ZCCHC6Q5VYS8 1495 aaKnown RBP19.51■□□□□ 0.71
SHMT2-201ENST00000328923 PCGF6Q9BYE7 350 aa19.37■□□□□ 0.69
SHMT2-201ENST00000328923 TTBK1Q5TCY1 1321 aaPredicted RBP19.19■□□□□ 0.66
SHMT2-201ENST00000328923 SHROOM4Q9ULL8 1493 aa19.19■□□□□ 0.66
SHMT2-201ENST00000328923 DCAF1Q9Y4B6 1507 aa19.18■□□□□ 0.66
SHMT2-201ENST00000328923 DCAF8L2P0C7V8 631 aa19.09■□□□□ 0.65
SHMT2-201ENST00000328923 MYO15BQ96JP2 1530 aa19.02■□□□□ 0.64
SHMT2-201ENST00000328923 BCL11AQ9H165 835 aa18.93■□□□□ 0.62
SHMT2-201ENST00000328923 PRKCSHP14314 528 aaPredicted RBP18.92■□□□□ 0.62
SHMT2-201ENST00000328923 NACADO15069 1562 aa18.91■□□□□ 0.62
SHMT2-201ENST00000328923 SUPT5HO00267 1087 aaKnown RBP18.85■□□□□ 0.61
SHMT2-201ENST00000328923 ACIN1Q9UKV3 1341 aaKnown RBP18.85■□□□□ 0.61
SHMT2-201ENST00000328923 RB1CC1Q8TDY2 1594 aa18.83■□□□□ 0.6
SHMT2-201ENST00000328923 NEUROD1Q13562 356 aa18.79■□□□□ 0.6
SHMT2-201ENST00000328923 FAM9AQ8IZU1 332 aaPredicted RBP18.78■□□□□ 0.6
SHMT2-201ENST00000328923 GTF3C3Q9Y5Q9 886 aa18.77■□□□□ 0.6
SHMT2-201ENST00000328923 CHIC1Q5VXU3 224 aa18.75■□□□□ 0.59
SHMT2-201ENST00000328923 DNAJC5BQ9UF47 199 aa18.62■□□□□ 0.57
SHMT2-201ENST00000328923 CENPBP07199 599 aaPredicted RBP18.61■□□□□ 0.57
SHMT2-201ENST00000328923 SCRIBQ14160 1630 aa18.56■□□□□ 0.56
SHMT2-201ENST00000328923 ZEB1P37275 1124 aaPredicted RBP18.55■□□□□ 0.56
SHMT2-201ENST00000328923 UNC13AQ9UPW8 1703 aa18.48■□□□□ 0.55
SHMT2-201ENST00000328923 TRIM26Q12899 539 aaPredicted RBP18.43■□□□□ 0.54
SHMT2-201ENST00000328923 PABPN1Q86U42 306 aaKnown RBP eCLIP18.43■□□□□ 0.54
SHMT2-201ENST00000328923 ERICH6Q7L0X2 663 aa18.3■□□□□ 0.52
SHMT2-201ENST00000328923 BICRAQ9NZM4 1560 aa18.28■□□□□ 0.52
SHMT2-201ENST00000328923 ANP32EQ9BTT0 268 aa18.28■□□□□ 0.52
SHMT2-201ENST00000328923 APLP2Q06481 763 aa18.23■□□□□ 0.51
SHMT2-201ENST00000328923 CSRNP3Q8WYN3 585 aa18.17■□□□□ 0.5
SHMT2-201ENST00000328923 RSF1Q96T23 1441 aaPredicted RBP18.1■□□□□ 0.49
SHMT2-201ENST00000328923 LOC105371045A0A1W2PR82 267 aa18.1■□□□□ 0.49
SHMT2-201ENST00000328923 DIEXFQ68CQ4 756 aaKnown RBP18.03■□□□□ 0.48
SHMT2-201ENST00000328923 CECR2Q9BXF3 1484 aa18■□□□□ 0.47
SHMT2-201ENST00000328923 MROH2BQ7Z745 1585 aa17.93■□□□□ 0.46
SHMT2-201ENST00000328923 YTHDC1Q96MU7 727 aaKnown RBP17.92■□□□□ 0.46
SHMT2-201ENST00000328923 CC2D2AQ9P2K1 1620 aa17.91■□□□□ 0.46
SHMT2-201ENST00000328923 BAZ1AQ9NRL2 1556 aaPredicted RBP17.87■□□□□ 0.45
SHMT2-201ENST00000328923 EIF4G1Q04637 1599 aaKnown RBP17.85■□□□□ 0.45
SHMT2-201ENST00000328923 TSHZ2Q9NRE2 1034 aa17.82■□□□□ 0.44
SHMT2-201ENST00000328923 SMARCA4P51532 1647 aa17.82■□□□□ 0.44
SHMT2-201ENST00000328923 WIZO95785 1651 aa17.82■□□□□ 0.44
SHMT2-201ENST00000328923 ANO8Q9HCE9 1232 aaPredicted RBP17.69■□□□□ 0.42
SHMT2-201ENST00000328923 PEG3Q9GZU2 1588 aa17.65■□□□□ 0.42
SHMT2-201ENST00000328923 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.64■□□□□ 0.41
SHMT2-201ENST00000328923 SUPT16HQ9Y5B9 1047 aaKnown RBP17.64■□□□□ 0.41
SHMT2-201ENST00000328923 TRIM41Q8WV44 630 aa17.62■□□□□ 0.41
SHMT2-201ENST00000328923 CCER1Q8TC90 406 aaPredicted RBP17.59■□□□□ 0.41
SHMT2-201ENST00000328923 TOP2AP11388 1531 aaKnown RBP17.58■□□□□ 0.41
SHMT2-201ENST00000328923 ATAD2BQ9ULI0 1458 aa17.55■□□□□ 0.4
SHMT2-201ENST00000328923 SMARCA2P51531 1590 aa17.54■□□□□ 0.4
SHMT2-201ENST00000328923 MIER1Q8N108 512 aa17.52■□□□□ 0.39
SHMT2-201ENST00000328923 NCAPD3P42695 1498 aa17.44■□□□□ 0.38
SHMT2-201ENST00000328923 CCDC88BA6NC98 1476 aa17.44■□□□□ 0.38
SHMT2-201ENST00000328923 ZNF316A6NFI3 1004 aaPredicted RBP17.44■□□□□ 0.38
SHMT2-201ENST00000328923 HMGXB3Q12766 1538 aa17.43■□□□□ 0.38
SHMT2-201ENST00000328923 CLSPNQ9HAW4 1339 aa17.42■□□□□ 0.38
SHMT2-201ENST00000328923 BAZ1BQ9UIG0 1483 aaKnown RBP17.42■□□□□ 0.38
SHMT2-201ENST00000328923 SALL2Q9Y467 1007 aaPredicted RBP17.38■□□□□ 0.37
SHMT2-201ENST00000328923 UBE2Q2Q8WVN8 375 aa17.36■□□□□ 0.37
SHMT2-201ENST00000328923 CCDC136Q96JN2 1154 aa17.34■□□□□ 0.37
SHMT2-201ENST00000328923 WRNQ14191 1432 aaPredicted RBP eCLIP17.3■□□□□ 0.36
SHMT2-201ENST00000328923 RBM19Q9Y4C8 960 aaKnown RBP17.29■□□□□ 0.36
SHMT2-201ENST00000328923 MSH5O43196 834 aa17.29■□□□□ 0.36
SHMT2-201ENST00000328923 SLC24A1O60721 1099 aa17.23■□□□□ 0.35
SHMT2-201ENST00000328923 DEKP35659 375 aaKnown RBP17.21■□□□□ 0.35
SHMT2-201ENST00000328923 EHMT2Q96KQ7 1210 aa17.21■□□□□ 0.35
SHMT2-201ENST00000328923 EIF5BO60841 1220 aaKnown RBP17.21■□□□□ 0.35
SHMT2-201ENST00000328923 ABCC8Q09428 1581 aa17.21■□□□□ 0.34
SHMT2-201ENST00000328923 BCANQ96GW7 911 aa17.19■□□□□ 0.34
SHMT2-201ENST00000328923 DNAJC5Q9H3Z4 198 aa17.13■□□□□ 0.33
SHMT2-201ENST00000328923 ERCC6Q03468 1493 aa17.13■□□□□ 0.33
SHMT2-201ENST00000328923 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-201ENST00000328923 CUX2O14529 1486 aa17.08■□□□□ 0.33
SHMT2-201ENST00000328923 ERICH6BQ5W0A0 696 aa17.07■□□□□ 0.32
SHMT2-201ENST00000328923 MYT1LQ9UL68 1186 aa17.06■□□□□ 0.32
SHMT2-201ENST00000328923 CEP162Q5TB80 1403 aa17.04■□□□□ 0.32
SHMT2-201ENST00000328923 NESP48681 1621 aa17.01■□□□□ 0.31
SHMT2-201ENST00000328923 PLEKHG5O94827 1062 aa17.01■□□□□ 0.31
SHMT2-201ENST00000328923 TNIKQ9UKE5 1360 aa17.01■□□□□ 0.31
SHMT2-201ENST00000328923 CFTRP13569 1480 aa17.01■□□□□ 0.31
SHMT2-201ENST00000328923 PKNOX2Q96KN3 472 aa16.98■□□□□ 0.31
SHMT2-201ENST00000328923 PRDM2Q13029 1718 aa16.98■□□□□ 0.31
SHMT2-201ENST00000328923 FKBP8Q14318 412 aa16.97■□□□□ 0.31
SHMT2-201ENST00000328923 EEA1Q15075 1411 aa16.96■□□□□ 0.3
SHMT2-201ENST00000328923 SYNJ1O43426 1573 aa16.96■□□□□ 0.3
SHMT2-201ENST00000328923 CADPSQ9ULU8 1353 aa16.95■□□□□ 0.3
SHMT2-201ENST00000328923 FANCIQ9NVI1 1328 aa16.94■□□□□ 0.3
SHMT2-201ENST00000328923 SOGA1O94964 1423 aa16.94■□□□□ 0.3
SHMT2-201ENST00000328923 ITGAEP38570 1179 aa16.92■□□□□ 0.3
SHMT2-201ENST00000328923 RTN4Q9NQC3 1192 aaKnown RBP16.92■□□□□ 0.3
SHMT2-201ENST00000328923 IL27Q8NEV9 243 aa16.91■□□□□ 0.3
SHMT2-201ENST00000328923 LAMC3Q9Y6N6 1575 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms