RNA–Protein interactions for RNA: ENST00000433274.6

SF1-209, Transcript of splicing factor 1, humanhuman

TSL 2 BASIC

Gene SF1, Length 2,317 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-209ENST00000433274 NISCHQ9Y2I1 1504 aa33.71■■■□□ 2.99
SF1-209ENST00000433274 CCDC180Q9P1Z9 1646 aa29.19■■■□□ 2.26
SF1-209ENST00000433274 ZCCHC6Q5VYS8 1495 aaKnown RBP28.36■■■□□ 2.13
SF1-209ENST00000433274 DCAF8L2P0C7V8 631 aa27.99■■■□□ 2.07
SF1-209ENST00000433274 SHROOM4Q9ULL8 1493 aa27.87■■■□□ 2.05
SF1-209ENST00000433274 DCAF1Q9Y4B6 1507 aa27.78■■■□□ 2.04
SF1-209ENST00000433274 ABCC9O60706 1549 aa27.6■■■□□ 2.01
SF1-209ENST00000433274 MYO15BQ96JP2 1530 aa27.34■■□□□ 1.97
SF1-209ENST00000433274 NACADO15069 1562 aa27.17■■□□□ 1.94
SF1-209ENST00000433274 SCRIBQ14160 1630 aa27.04■■□□□ 1.92
SF1-209ENST00000433274 SUPT5HO00267 1087 aaKnown RBP26.93■■□□□ 1.9
SF1-209ENST00000433274 RB1CC1Q8TDY2 1594 aa26.91■■□□□ 1.9
SF1-209ENST00000433274 UNC13AQ9UPW8 1703 aa26.39■■□□□ 1.81
SF1-209ENST00000433274 RSF1Q96T23 1441 aaPredicted RBP26.28■■□□□ 1.8
SF1-209ENST00000433274 CECR2Q9BXF3 1484 aa26.26■■□□□ 1.79
SF1-209ENST00000433274 PABPN1Q86U42 306 aaKnown RBP eCLIP26.14■■□□□ 1.782e-6■□□□□ 8.9
SF1-209ENST00000433274 BICRAQ9NZM4 1560 aa26.13■■□□□ 1.77
SF1-209ENST00000433274 MROH2BQ7Z745 1585 aa26.1■■□□□ 1.77
SF1-209ENST00000433274 BAZ1AQ9NRL2 1556 aaPredicted RBP25.99■■□□□ 1.75
SF1-209ENST00000433274 WIZO95785 1651 aa25.91■■□□□ 1.74
SF1-209ENST00000433274 SMARCA4P51532 1647 aa25.86■■□□□ 1.73
SF1-209ENST00000433274 CHIC1Q5VXU3 224 aa25.81■■□□□ 1.72
SF1-209ENST00000433274 TOP2AP11388 1531 aaKnown RBP25.58■■□□□ 1.69
SF1-209ENST00000433274 PEG3Q9GZU2 1588 aa25.47■■□□□ 1.67
SF1-209ENST00000433274 ATAD2BQ9ULI0 1458 aa25.4■■□□□ 1.66
SF1-209ENST00000433274 CCDC88BA6NC98 1476 aa25.38■■□□□ 1.65
SF1-209ENST00000433274 SMARCA2P51531 1590 aa25.37■■□□□ 1.65
SF1-209ENST00000433274 EIF4G1Q04637 1599 aaKnown RBP25.33■■□□□ 1.64
SF1-209ENST00000433274 BAZ1BQ9UIG0 1483 aaKnown RBP25.29■■□□□ 1.64
SF1-209ENST00000433274 TRIM41Q8WV44 630 aa25.23■■□□□ 1.63
SF1-209ENST00000433274 NCAPD3P42695 1498 aa25.11■■□□□ 1.61
SF1-209ENST00000433274 HMGXB3Q12766 1538 aa25.07■■□□□ 1.6
SF1-209ENST00000433274 ABCC8Q09428 1581 aa24.97■■□□□ 1.59
SF1-209ENST00000433274 LOC105371045A0A1W2PR82 267 aa24.92■■□□□ 1.58
SF1-209ENST00000433274 CC2D2AQ9P2K1 1620 aa24.91■■□□□ 1.58
SF1-209ENST00000433274 FAM9AQ8IZU1 332 aaPredicted RBP24.87■■□□□ 1.57
SF1-209ENST00000433274 WRNQ14191 1432 aaPredicted RBP eCLIP24.74■■□□□ 1.55
SF1-209ENST00000433274 CFTRP13569 1480 aa24.64■■□□□ 1.53
SF1-209ENST00000433274 SYNJ1O43426 1573 aa24.62■■□□□ 1.53
SF1-209ENST00000433274 EHMT2Q96KQ7 1210 aa24.6■■□□□ 1.53
SF1-209ENST00000433274 SOGA1O94964 1423 aa24.55■■□□□ 1.52
SF1-209ENST00000433274 CADPSQ9ULU8 1353 aa24.53■■□□□ 1.52
SF1-209ENST00000433274 TOP2BQ02880 1626 aa24.46■■□□□ 1.51
SF1-209ENST00000433274 RUSC2Q8N2Y8 1516 aa24.46■■□□□ 1.51
SF1-209ENST00000433274 PRDM2Q13029 1718 aa24.43■■□□□ 1.5
SF1-209ENST00000433274 EEA1Q15075 1411 aa24.43■■□□□ 1.5
SF1-209ENST00000433274 BIVM-ERCC5R4GMW8 1640 aa24.4■■□□□ 1.5
SF1-209ENST00000433274 CUX1P39880 1505 aa24.38■■□□□ 1.49
SF1-209ENST00000433274 CSRNP3Q8WYN3 585 aa24.38■■□□□ 1.49
SF1-209ENST00000433274 DNAJC5BQ9UF47 199 aa24.36■■□□□ 1.49
SF1-209ENST00000433274 NESP48681 1621 aa24.31■■□□□ 1.48
SF1-209ENST00000433274 FANCD2Q9BXW9 1451 aa24.27■■□□□ 1.48
SF1-209ENST00000433274 LAMC3Q9Y6N6 1575 aa24.2■■□□□ 1.46
SF1-209ENST00000433274 GOLGA3Q08378 1498 aa24.16■■□□□ 1.46
SF1-209ENST00000433274 UBTFP17480 764 aaKnown RBP24.15■■□□□ 1.46
SF1-209ENST00000433274 CEP164Q9UPV0 1460 aa24.13■■□□□ 1.45
SF1-209ENST00000433274 TNIKQ9UKE5 1360 aa24.12■■□□□ 1.45
SF1-209ENST00000433274 KIF21BO75037 1637 aa24.11■■□□□ 1.45
SF1-209ENST00000433274 FGD5Q6ZNL6 1462 aa24.09■■□□□ 1.45
SF1-209ENST00000433274 KIF27Q86VH2 1401 aa24.08■■□□□ 1.44
SF1-209ENST00000433274 CEP162Q5TB80 1403 aa24.06■■□□□ 1.44
SF1-209ENST00000433274 PDS5BQ9NTI5 1447 aa24.05■■□□□ 1.44
SF1-209ENST00000433274 DNMBPQ6XZF7 1577 aa24.04■■□□□ 1.44
SF1-209ENST00000433274 RAPGEF2Q9Y4G8 1499 aa24.03■■□□□ 1.44
SF1-209ENST00000433274 TOPBP1Q92547 1522 aa24.02■■□□□ 1.44
SF1-209ENST00000433274 PCGF6Q9BYE7 350 aa24.02■■□□□ 1.44
SF1-209ENST00000433274 CUX2O14529 1486 aa24■■□□□ 1.43
SF1-209ENST00000433274 URB2Q14146 1524 aaKnown RBP23.96■■□□□ 1.43
SF1-209ENST00000433274 PRXQ9BXM0 1461 aa23.95■■□□□ 1.42
SF1-209ENST00000433274 KIF21AQ7Z4S6 1674 aa23.94■■□□□ 1.42
SF1-209ENST00000433274 POLA1P09884 1462 aaPredicted RBP23.93■■□□□ 1.42
SF1-209ENST00000433274 RAD54L2Q9Y4B4 1467 aa23.91■■□□□ 1.42
SF1-209ENST00000433274 ERICH3Q5RHP9 1530 aa23.9■■□□□ 1.42
SF1-209ENST00000433274 TRIM26Q12899 539 aaPredicted RBP23.87■■□□□ 1.41
SF1-209ENST00000433274 IGF1RP08069 1367 aa23.86■■□□□ 1.41
SF1-209ENST00000433274 ABCA10Q8WWZ4 1543 aa23.83■■□□□ 1.41
SF1-209ENST00000433274 CLIP1P30622 1438 aa23.82■■□□□ 1.4
SF1-209ENST00000433274 PPARGC1BQ86YN6 1023 aaKnown RBP23.8■■□□□ 1.4
SF1-209ENST00000433274 RANGAP1P46060 587 aaPredicted RBP23.79■■□□□ 1.4
SF1-209ENST00000433274 CARMIL1Q5VZK9 1371 aa23.75■■□□□ 1.39
SF1-209ENST00000433274 MRC2Q9UBG0 1479 aa23.73■■□□□ 1.39
SF1-209ENST00000433274 WDR97A6NE52 1622 aa23.7■■□□□ 1.38
SF1-209ENST00000433274 TDRD9Q8NDG6 1382 aaKnown RBP23.68■■□□□ 1.38
SF1-209ENST00000433274 ERCC6Q03468 1493 aa23.62■■□□□ 1.37
SF1-209ENST00000433274 VPS8Q8N3P4 1428 aa23.62■■□□□ 1.37
SF1-209ENST00000433274 TARBP1Q13395 1621 aaKnown RBP23.61■■□□□ 1.37
SF1-209ENST00000433274 ABCA5Q8WWZ7 1642 aa23.61■■□□□ 1.37
SF1-209ENST00000433274 GAPVD1Q14C86 1478 aa23.6■■□□□ 1.37
SF1-209ENST00000433274 TTBK1Q5TCY1 1321 aaPredicted RBP23.59■■□□□ 1.37
SF1-209ENST00000433274 CUL7Q14999 1698 aa23.57■■□□□ 1.36
SF1-209ENST00000433274 WDR62O43379 1518 aa23.57■■□□□ 1.36
SF1-209ENST00000433274 ARAP1Q96P48 1450 aa23.54■■□□□ 1.36
SF1-209ENST00000433274 ARHGAP35Q9NRY4 1499 aa23.49■■□□□ 1.35
SF1-209ENST00000433274 AQRO60306 1485 aaKnown RBP eCLIP23.47■■□□□ 1.351e-7■■■■■ 52.9
SF1-209ENST00000433274 IFT140Q96RY7 1462 aa23.46■■□□□ 1.35
SF1-209ENST00000433274 APLP2Q06481 763 aa23.45■■□□□ 1.34
SF1-209ENST00000433274 THOC2Q8NI27 1593 aaKnown RBP23.45■■□□□ 1.34
SF1-209ENST00000433274 HRCP23327 699 aa23.44■■□□□ 1.34
SF1-209ENST00000433274 ZNF608Q9ULD9 1512 aaPredicted RBP23.41■■□□□ 1.34
SF1-209ENST00000433274 PBRM1Q86U86 1689 aa23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms