RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 NISCHQ9Y2I1 1504 aa37.46■■■■□ 3.59
TRIM28-203ENST00000593582 CCDC180Q9P1Z9 1646 aa33.4■■■□□ 2.94
TRIM28-203ENST00000593582 ABCC9O60706 1549 aa33.02■■■□□ 2.88
TRIM28-203ENST00000593582 RB1CC1Q8TDY2 1594 aa31.63■■■□□ 2.65
TRIM28-203ENST00000593582 NACADO15069 1562 aa31.52■■■□□ 2.64
TRIM28-203ENST00000593582 DCAF8L2P0C7V8 631 aa31.52■■■□□ 2.64
TRIM28-203ENST00000593582 MYO15BQ96JP2 1530 aa31.23■■■□□ 2.59
TRIM28-203ENST00000593582 ZCCHC6Q5VYS8 1495 aaKnown RBP31.14■■■□□ 2.57
TRIM28-203ENST00000593582 DCAF1Q9Y4B6 1507 aa30.98■■■□□ 2.55
TRIM28-203ENST00000593582 PABPN1Q86U42 306 aaKnown RBP eCLIP30.84■■■□□ 2.53
TRIM28-203ENST00000593582 UNC13AQ9UPW8 1703 aa30.81■■■□□ 2.52
TRIM28-203ENST00000593582 BICRAQ9NZM4 1560 aa30.64■■■□□ 2.5
TRIM28-203ENST00000593582 DNAJC5BQ9UF47 199 aa30.58■■■□□ 2.49
TRIM28-203ENST00000593582 SCRIBQ14160 1630 aa30.48■■■□□ 2.47
TRIM28-203ENST00000593582 SHROOM4Q9ULL8 1493 aa30.34■■■□□ 2.45
TRIM28-203ENST00000593582 EIF4G1Q04637 1599 aaKnown RBP29.89■■■□□ 2.38
TRIM28-203ENST00000593582 CC2D2AQ9P2K1 1620 aa29.83■■■□□ 2.37
TRIM28-203ENST00000593582 CECR2Q9BXF3 1484 aa29.72■■■□□ 2.35
TRIM28-203ENST00000593582 SMARCA4P51532 1647 aa29.12■■■□□ 2.25
TRIM28-203ENST00000593582 NCAPD3P42695 1498 aa29.1■■■□□ 2.25
TRIM28-203ENST00000593582 BAZ1AQ9NRL2 1556 aaPredicted RBP29.07■■■□□ 2.24
TRIM28-203ENST00000593582 ATAD2BQ9ULI0 1458 aa29.06■■■□□ 2.24
TRIM28-203ENST00000593582 SMARCA2P51531 1590 aa29.02■■■□□ 2.24
TRIM28-203ENST00000593582 HMGXB3Q12766 1538 aa28.91■■■□□ 2.22
TRIM28-203ENST00000593582 MROH2BQ7Z745 1585 aa28.86■■■□□ 2.21
TRIM28-203ENST00000593582 PEG3Q9GZU2 1588 aa28.84■■■□□ 2.21
TRIM28-203ENST00000593582 BAZ1BQ9UIG0 1483 aaKnown RBP28.83■■■□□ 2.21
TRIM28-203ENST00000593582 ERCC6Q03468 1493 aa28.53■■■□□ 2.16
TRIM28-203ENST00000593582 WIZO95785 1651 aa28.51■■■□□ 2.16
TRIM28-203ENST00000593582 NESP48681 1621 aa28.47■■■□□ 2.15
TRIM28-203ENST00000593582 RSF1Q96T23 1441 aaPredicted RBP28.45■■■□□ 2.15
TRIM28-203ENST00000593582 LAMC3Q9Y6N6 1575 aa28.37■■■□□ 2.13
TRIM28-203ENST00000593582 CUX2O14529 1486 aa28.3■■■□□ 2.12
TRIM28-203ENST00000593582 CADPSQ9ULU8 1353 aa28.25■■■□□ 2.11
TRIM28-203ENST00000593582 PDS5BQ9NTI5 1447 aa28.23■■■□□ 2.11
TRIM28-203ENST00000593582 TOP2AP11388 1531 aaKnown RBP28.22■■■□□ 2.11
TRIM28-203ENST00000593582 KIF21AQ7Z4S6 1674 aa28.09■■■□□ 2.09
TRIM28-203ENST00000593582 THOC2Q8NI27 1593 aaKnown RBP28.07■■■□□ 2.08
TRIM28-203ENST00000593582 CFTRP13569 1480 aa28.01■■■□□ 2.07
TRIM28-203ENST00000593582 MRC2Q9UBG0 1479 aa27.93■■■□□ 2.06
TRIM28-203ENST00000593582 FANCD2Q9BXW9 1451 aa27.92■■■□□ 2.06
TRIM28-203ENST00000593582 CEP164Q9UPV0 1460 aa27.91■■■□□ 2.06
TRIM28-203ENST00000593582 CCDC88BA6NC98 1476 aa27.9■■■□□ 2.06
TRIM28-203ENST00000593582 WDR62O43379 1518 aa27.82■■■□□ 2.04
TRIM28-203ENST00000593582 DNAJC5Q9H3Z4 198 aa27.81■■■□□ 2.04
TRIM28-203ENST00000593582 PRDM2Q13029 1718 aa27.68■■■□□ 2.02
TRIM28-203ENST00000593582 URB2Q14146 1524 aaKnown RBP27.63■■■□□ 2.01
TRIM28-203ENST00000593582 SUPT5HO00267 1087 aaKnown RBP27.55■■■□□ 2
TRIM28-203ENST00000593582 ABCC8Q09428 1581 aa27.43■■□□□ 1.98
TRIM28-203ENST00000593582 TOPBP1Q92547 1522 aa27.42■■□□□ 1.98
TRIM28-203ENST00000593582 DNMBPQ6XZF7 1577 aa27.35■■□□□ 1.97
TRIM28-203ENST00000593582 IFT140Q96RY7 1462 aa27.34■■□□□ 1.97
TRIM28-203ENST00000593582 ZNF608Q9ULD9 1512 aaPredicted RBP27.22■■□□□ 1.95
TRIM28-203ENST00000593582 POLA1P09884 1462 aaPredicted RBP27.18■■□□□ 1.94
TRIM28-203ENST00000593582 OSCARQ8IYS5 282 aa27.13■■□□□ 1.93
TRIM28-203ENST00000593582 TARBP1Q13395 1621 aaKnown RBP27.12■■□□□ 1.93
TRIM28-203ENST00000593582 CUX1P39880 1505 aa27.1■■□□□ 1.93
TRIM28-203ENST00000593582 EIF4G3O43432 1585 aaKnown RBP27.09■■□□□ 1.93
TRIM28-203ENST00000593582 SOGA1O94964 1423 aa27.08■■□□□ 1.93
TRIM28-203ENST00000593582 FGD5Q6ZNL6 1462 aa27.06■■□□□ 1.92
TRIM28-203ENST00000593582 RAD54L2Q9Y4B4 1467 aa27.06■■□□□ 1.92
TRIM28-203ENST00000593582 AQRO60306 1485 aaKnown RBP eCLIP27.06■■□□□ 1.927e-10■■■■■ 43.7
TRIM28-203ENST00000593582 TDRD9Q8NDG6 1382 aaKnown RBP26.97■■□□□ 1.91
TRIM28-203ENST00000593582 WDR97A6NE52 1622 aa26.9■■□□□ 1.9
TRIM28-203ENST00000593582 WRNQ14191 1432 aaPredicted RBP eCLIP26.84■■□□□ 1.89
TRIM28-203ENST00000593582 FBLN2P98095 1184 aa26.84■■□□□ 1.89
TRIM28-203ENST00000593582 GRIN2BQ13224 1484 aa26.8■■□□□ 1.88
TRIM28-203ENST00000593582 TRIM41Q8WV44 630 aa26.79■■□□□ 1.88
TRIM28-203ENST00000593582 SNAPC4Q5SXM2 1469 aa26.79■■□□□ 1.88
TRIM28-203ENST00000593582 ABCA10Q8WWZ4 1543 aa26.79■■□□□ 1.88
TRIM28-203ENST00000593582 TOP2BQ02880 1626 aa26.78■■□□□ 1.88
TRIM28-203ENST00000593582 CHD1O14646 1710 aa26.77■■□□□ 1.88
TRIM28-203ENST00000593582 GAPVD1Q14C86 1478 aa26.76■■□□□ 1.87
TRIM28-203ENST00000593582 BIVM-ERCC5R4GMW8 1640 aa26.76■■□□□ 1.87
TRIM28-203ENST00000593582 MAGI1Q96QZ7 1491 aaPredicted RBP26.75■■□□□ 1.87
TRIM28-203ENST00000593582 SYNJ1O43426 1573 aa26.75■■□□□ 1.87
TRIM28-203ENST00000593582 CHMP7Q8WUX9 453 aaPredicted RBP26.72■■□□□ 1.87
TRIM28-203ENST00000593582 ABCA5Q8WWZ7 1642 aa26.68■■□□□ 1.86
TRIM28-203ENST00000593582 SYNJ2O15056 1496 aa26.66■■□□□ 1.86
TRIM28-203ENST00000593582 PBRM1Q86U86 1689 aa26.65■■□□□ 1.86
TRIM28-203ENST00000593582 RIMBP3CA6NJZ7 1639 aa26.64■■□□□ 1.85
TRIM28-203ENST00000593582 RIMBP3BA6NNM3 1639 aa26.64■■□□□ 1.85
TRIM28-203ENST00000593582 RIMBP3Q9UFD9 1639 aa26.64■■□□□ 1.85
TRIM28-203ENST00000593582 ARHGEF11O15085 1522 aa26.63■■□□□ 1.85
TRIM28-203ENST00000593582 CLASP1Q7Z460 1538 aa26.5■■□□□ 1.83
TRIM28-203ENST00000593582 ERICH3Q5RHP9 1530 aa26.46■■□□□ 1.83
TRIM28-203ENST00000593582 CYB5RLQ6IPT4 315 aa26.46■■□□□ 1.83
TRIM28-203ENST00000593582 ADAMTS12P58397 1594 aa26.45■■□□□ 1.82
TRIM28-203ENST00000593582 GRIN2AQ12879 1464 aa26.44■■□□□ 1.82
TRIM28-203ENST00000593582 FHAD1B1AJZ9 1412 aa26.44■■□□□ 1.82
TRIM28-203ENST00000593582 ARAP1Q96P48 1450 aa26.39■■□□□ 1.82
TRIM28-203ENST00000593582 NUP160Q12769 1436 aa26.33■■□□□ 1.81
TRIM28-203ENST00000593582 KIF27Q86VH2 1401 aa26.32■■□□□ 1.8
TRIM28-203ENST00000593582 CEP170Q5SW79 1584 aa26.29■■□□□ 1.8
TRIM28-203ENST00000593582 IGF1RP08069 1367 aa26.24■■□□□ 1.79
TRIM28-203ENST00000593582 CUL7Q14999 1698 aa26.15■■□□□ 1.78
TRIM28-203ENST00000593582 SHROOM2Q13796 1616 aa26.13■■□□□ 1.77
TRIM28-203ENST00000593582 ERCC6L2Q5T890 1561 aa26.11■■□□□ 1.77
TRIM28-203ENST00000593582 JPH4Q96JJ6 628 aa26.1■■□□□ 1.77
TRIM28-203ENST00000593582 CARMIL1Q5VZK9 1371 aa26.09■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms