RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 NISCHQ9Y2I1 1504 aa28.2■■■□□ 2.11
SHMT2-233ENST00000557529 CCDC180Q9P1Z9 1646 aa24.61■■□□□ 1.53
SHMT2-233ENST00000557529 ZCCHC6Q5VYS8 1495 aaKnown RBP23.7■■□□□ 1.38
SHMT2-233ENST00000557529 DCAF1Q9Y4B6 1507 aa23.37■■□□□ 1.33
SHMT2-233ENST00000557529 DCAF8L2P0C7V8 631 aa23.25■■□□□ 1.31
SHMT2-233ENST00000557529 ABCC9O60706 1549 aa23.2■■□□□ 1.31
SHMT2-233ENST00000557529 MYO15BQ96JP2 1530 aa23.12■■□□□ 1.29
SHMT2-233ENST00000557529 SHROOM4Q9ULL8 1493 aa22.95■■□□□ 1.26
SHMT2-233ENST00000557529 NACADO15069 1562 aa22.94■■□□□ 1.26
SHMT2-233ENST00000557529 RB1CC1Q8TDY2 1594 aa22.72■■□□□ 1.23
SHMT2-233ENST00000557529 SCRIBQ14160 1630 aa22.58■■□□□ 1.2
SHMT2-233ENST00000557529 UNC13AQ9UPW8 1703 aa22.16■■□□□ 1.14
SHMT2-233ENST00000557529 SUPT5HO00267 1087 aaKnown RBP22.12■■□□□ 1.13
SHMT2-233ENST00000557529 BICRAQ9NZM4 1560 aa21.99■■□□□ 1.11
SHMT2-233ENST00000557529 RSF1Q96T23 1441 aaPredicted RBP21.89■■□□□ 1.09
SHMT2-233ENST00000557529 PABPN1Q86U42 306 aaKnown RBP eCLIP21.87■■□□□ 1.09
SHMT2-233ENST00000557529 CECR2Q9BXF3 1484 aa21.87■■□□□ 1.09
SHMT2-233ENST00000557529 BAZ1AQ9NRL2 1556 aaPredicted RBP21.8■■□□□ 1.08
SHMT2-233ENST00000557529 MROH2BQ7Z745 1585 aa21.76■■□□□ 1.07
SHMT2-233ENST00000557529 SMARCA4P51532 1647 aa21.67■■□□□ 1.06
SHMT2-233ENST00000557529 WIZO95785 1651 aa21.56■■□□□ 1.04
SHMT2-233ENST00000557529 PEG3Q9GZU2 1588 aa21.43■■□□□ 1.02
SHMT2-233ENST00000557529 TOP2AP11388 1531 aaKnown RBP21.41■■□□□ 1.02
SHMT2-233ENST00000557529 SMARCA2P51531 1590 aa21.35■■□□□ 1.01
SHMT2-233ENST00000557529 EIF4G1Q04637 1599 aaKnown RBP21.34■■□□□ 1.01
SHMT2-233ENST00000557529 ATAD2BQ9ULI0 1458 aa21.32■■□□□ 1
SHMT2-233ENST00000557529 BAZ1BQ9UIG0 1483 aaKnown RBP21.22■□□□□ 0.99
SHMT2-233ENST00000557529 CHIC1Q5VXU3 224 aa21.21■□□□□ 0.99
SHMT2-233ENST00000557529 NCAPD3P42695 1498 aa21.17■□□□□ 0.98
SHMT2-233ENST00000557529 CCDC88BA6NC98 1476 aa21.16■□□□□ 0.98
SHMT2-233ENST00000557529 HMGXB3Q12766 1538 aa21.13■□□□□ 0.97
SHMT2-233ENST00000557529 CC2D2AQ9P2K1 1620 aa21■□□□□ 0.95
SHMT2-233ENST00000557529 TRIM41Q8WV44 630 aa20.85■□□□□ 0.93
SHMT2-233ENST00000557529 CFTRP13569 1480 aa20.69■□□□□ 0.9
SHMT2-233ENST00000557529 ABCC8Q09428 1581 aa20.68■□□□□ 0.9
SHMT2-233ENST00000557529 CADPSQ9ULU8 1353 aa20.62■□□□□ 0.89
SHMT2-233ENST00000557529 WRNQ14191 1432 aaPredicted RBP eCLIP20.62■□□□□ 0.89
SHMT2-233ENST00000557529 PRDM2Q13029 1718 aa20.54■□□□□ 0.88
SHMT2-233ENST00000557529 SYNJ1O43426 1573 aa20.48■□□□□ 0.87
SHMT2-233ENST00000557529 LAMC3Q9Y6N6 1575 aa20.43■□□□□ 0.86
SHMT2-233ENST00000557529 TOP2BQ02880 1626 aa20.43■□□□□ 0.86
SHMT2-233ENST00000557529 DNAJC5BQ9UF47 199 aa20.41■□□□□ 0.86
SHMT2-233ENST00000557529 BIVM-ERCC5R4GMW8 1640 aa20.4■□□□□ 0.86
SHMT2-233ENST00000557529 EEA1Q15075 1411 aa20.39■□□□□ 0.86
SHMT2-233ENST00000557529 FAM9AQ8IZU1 332 aaPredicted RBP20.39■□□□□ 0.85
SHMT2-233ENST00000557529 FANCD2Q9BXW9 1451 aa20.38■□□□□ 0.85
SHMT2-233ENST00000557529 CUX1P39880 1505 aa20.36■□□□□ 0.85
SHMT2-233ENST00000557529 NESP48681 1621 aa20.36■□□□□ 0.85
SHMT2-233ENST00000557529 LOC105371045A0A1W2PR82 267 aa20.34■□□□□ 0.85
SHMT2-233ENST00000557529 SOGA1O94964 1423 aa20.31■□□□□ 0.84
SHMT2-233ENST00000557529 PDS5BQ9NTI5 1447 aa20.3■□□□□ 0.84
SHMT2-233ENST00000557529 CEP164Q9UPV0 1460 aa20.25■□□□□ 0.83
SHMT2-233ENST00000557529 CSRNP3Q8WYN3 585 aa20.22■□□□□ 0.83
SHMT2-233ENST00000557529 RUSC2Q8N2Y8 1516 aa20.21■□□□□ 0.83
SHMT2-233ENST00000557529 DNMBPQ6XZF7 1577 aa20.2■□□□□ 0.82
SHMT2-233ENST00000557529 TOPBP1Q92547 1522 aa20.15■□□□□ 0.82
SHMT2-233ENST00000557529 FGD5Q6ZNL6 1462 aa20.14■□□□□ 0.82
SHMT2-233ENST00000557529 KIF27Q86VH2 1401 aa20.12■□□□□ 0.81
SHMT2-233ENST00000557529 URB2Q14146 1524 aaKnown RBP20.1■□□□□ 0.81
SHMT2-233ENST00000557529 KIF21AQ7Z4S6 1674 aa20.1■□□□□ 0.81
SHMT2-233ENST00000557529 KIF21BO75037 1637 aa20.07■□□□□ 0.8
SHMT2-233ENST00000557529 GOLGA3Q08378 1498 aa20.06■□□□□ 0.8
SHMT2-233ENST00000557529 EHMT2Q96KQ7 1210 aa20.06■□□□□ 0.8
SHMT2-233ENST00000557529 POLA1P09884 1462 aaPredicted RBP20.05■□□□□ 0.8
SHMT2-233ENST00000557529 CUX2O14529 1486 aa20.02■□□□□ 0.8
SHMT2-233ENST00000557529 MRC2Q9UBG0 1479 aa20.02■□□□□ 0.8
SHMT2-233ENST00000557529 TNIKQ9UKE5 1360 aa20.01■□□□□ 0.79
SHMT2-233ENST00000557529 ABCA10Q8WWZ4 1543 aa19.99■□□□□ 0.79
SHMT2-233ENST00000557529 PRXQ9BXM0 1461 aa19.96■□□□□ 0.79
SHMT2-233ENST00000557529 RAD54L2Q9Y4B4 1467 aa19.96■□□□□ 0.79
SHMT2-233ENST00000557529 UBTFP17480 764 aaKnown RBP19.95■□□□□ 0.79
SHMT2-233ENST00000557529 ERICH3Q5RHP9 1530 aa19.95■□□□□ 0.78
SHMT2-233ENST00000557529 ERCC6Q03468 1493 aa19.93■□□□□ 0.78
SHMT2-233ENST00000557529 RAPGEF2Q9Y4G8 1499 aa19.91■□□□□ 0.78
SHMT2-233ENST00000557529 IGF1RP08069 1367 aa19.91■□□□□ 0.78
SHMT2-233ENST00000557529 WDR62O43379 1518 aa19.9■□□□□ 0.78
SHMT2-233ENST00000557529 WDR97A6NE52 1622 aa19.88■□□□□ 0.77
SHMT2-233ENST00000557529 CEP162Q5TB80 1403 aa19.87■□□□□ 0.77
SHMT2-233ENST00000557529 TARBP1Q13395 1621 aaKnown RBP19.83■□□□□ 0.76
SHMT2-233ENST00000557529 CARMIL1Q5VZK9 1371 aa19.82■□□□□ 0.76
SHMT2-233ENST00000557529 ABCA5Q8WWZ7 1642 aa19.8■□□□□ 0.76
SHMT2-233ENST00000557529 THOC2Q8NI27 1593 aaKnown RBP19.8■□□□□ 0.76
SHMT2-233ENST00000557529 IFT140Q96RY7 1462 aa19.8■□□□□ 0.76
SHMT2-233ENST00000557529 GAPVD1Q14C86 1478 aa19.78■□□□□ 0.76
SHMT2-233ENST00000557529 TDRD9Q8NDG6 1382 aaKnown RBP19.78■□□□□ 0.76
SHMT2-233ENST00000557529 CUL7Q14999 1698 aa19.76■□□□□ 0.75
SHMT2-233ENST00000557529 CLIP1P30622 1438 aa19.74■□□□□ 0.75
SHMT2-233ENST00000557529 AQRO60306 1485 aaKnown RBP eCLIP19.64■□□□□ 0.733e-7■■■□□ 19.1
SHMT2-233ENST00000557529 GRIN2BQ13224 1484 aa19.64■□□□□ 0.73
SHMT2-233ENST00000557529 PBRM1Q86U86 1689 aa19.62■□□□□ 0.73
SHMT2-233ENST00000557529 ZNF608Q9ULD9 1512 aaPredicted RBP19.61■□□□□ 0.73
SHMT2-233ENST00000557529 FHAD1B1AJZ9 1412 aa19.6■□□□□ 0.73
SHMT2-233ENST00000557529 VPS8Q8N3P4 1428 aa19.56■□□□□ 0.72
SHMT2-233ENST00000557529 EIF4G3O43432 1585 aaKnown RBP19.55■□□□□ 0.72
SHMT2-233ENST00000557529 ADAMTS12P58397 1594 aa19.55■□□□□ 0.72
SHMT2-233ENST00000557529 RANGAP1P46060 587 aaPredicted RBP19.55■□□□□ 0.72
SHMT2-233ENST00000557529 TRIM26Q12899 539 aaPredicted RBP19.51■□□□□ 0.71
SHMT2-233ENST00000557529 ARAP1Q96P48 1450 aa19.51■□□□□ 0.71
SHMT2-233ENST00000557529 CTTNBP2Q8WZ74 1663 aa19.5■□□□□ 0.71
SHMT2-233ENST00000557529 ARHGAP35Q9NRY4 1499 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms