Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
HMGN4O00479 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
HMGN4O00479 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC24.9■■□□□ 1.58
HMGN4O00479 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
HMGN4O00479 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
HMGN4O00479 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
HMGN4O00479 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
HMGN4O00479 AL135925.1-201ENST00000605920 1701 ntBASIC24.87■■□□□ 1.57
HMGN4O00479 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
HMGN4O00479 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC24.86■■□□□ 1.57
HMGN4O00479 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC24.86■■□□□ 1.57
HMGN4O00479 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
HMGN4O00479 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
HMGN4O00479 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC24.84■■□□□ 1.57
HMGN4O00479 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC24.84■■□□□ 1.57
HMGN4O00479 AC139426.1-201ENST00000568218 2529 ntBASIC24.84■■□□□ 1.57
HMGN4O00479 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC24.84■■□□□ 1.57
HMGN4O00479 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
HMGN4O00479 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC24.83■■□□□ 1.57
HMGN4O00479 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC24.83■■□□□ 1.57
HMGN4O00479 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
HMGN4O00479 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC24.82■■□□□ 1.56
HMGN4O00479 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
HMGN4O00479 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC24.81■■□□□ 1.56
HMGN4O00479 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
HMGN4O00479 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
HMGN4O00479 RARRES2P7-201ENST00000567349 469 ntBASIC24.81■■□□□ 1.56
HMGN4O00479 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
HMGN4O00479 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
HMGN4O00479 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
HMGN4O00479 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
HMGN4O00479 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC24.77■■□□□ 1.56
HMGN4O00479 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC24.77■■□□□ 1.56
HMGN4O00479 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
HMGN4O00479 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
HMGN4O00479 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC24.76■■□□□ 1.55
HMGN4O00479 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
HMGN4O00479 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
HMGN4O00479 SETD8P1-201ENST00000623146 1180 ntBASIC24.76■■□□□ 1.55
HMGN4O00479 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC24.75■■□□□ 1.55
HMGN4O00479 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC24.75■■□□□ 1.55
HMGN4O00479 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC24.75■■□□□ 1.55
HMGN4O00479 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
HMGN4O00479 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
HMGN4O00479 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC24.73■■□□□ 1.55
HMGN4O00479 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC24.72■■□□□ 1.55
HMGN4O00479 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
HMGN4O00479 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
HMGN4O00479 SHF-206ENST00000560471 2499 ntTSL 5 BASIC24.72■■□□□ 1.55
HMGN4O00479 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC24.72■■□□□ 1.55
HMGN4O00479 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC24.71■■□□□ 1.55
HMGN4O00479 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
HMGN4O00479 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
HMGN4O00479 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
HMGN4O00479 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
HMGN4O00479 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
HMGN4O00479 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
HMGN4O00479 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC24.69■■□□□ 1.54
HMGN4O00479 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC24.69■■□□□ 1.54
HMGN4O00479 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
HMGN4O00479 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC24.69■■□□□ 1.54
HMGN4O00479 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
HMGN4O00479 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC24.68■■□□□ 1.54
HMGN4O00479 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
HMGN4O00479 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
HMGN4O00479 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
HMGN4O00479 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
HMGN4O00479 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
HMGN4O00479 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC24.65■■□□□ 1.54
HMGN4O00479 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
HMGN4O00479 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
HMGN4O00479 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
HMGN4O00479 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC24.63■■□□□ 1.53
HMGN4O00479 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
HMGN4O00479 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
HMGN4O00479 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC24.61■■□□□ 1.53
HMGN4O00479 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC24.61■■□□□ 1.53
HMGN4O00479 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
HMGN4O00479 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
HMGN4O00479 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
HMGN4O00479 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
HMGN4O00479 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC24.59■■□□□ 1.53
HMGN4O00479 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC24.59■■□□□ 1.53
HMGN4O00479 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC24.59■■□□□ 1.53
HMGN4O00479 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC24.59■■□□□ 1.53
HMGN4O00479 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
HMGN4O00479 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
HMGN4O00479 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC24.55■■□□□ 1.52
HMGN4O00479 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
HMGN4O00479 AC136428.2-201ENST00000563187 214 ntBASIC24.54■■□□□ 1.52
HMGN4O00479 AC010864.1-201ENST00000609407 1511 ntBASIC24.54■■□□□ 1.52
HMGN4O00479 AL391121.1-201ENST00000607967 1349 ntBASIC24.54■■□□□ 1.52
HMGN4O00479 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
HMGN4O00479 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
HMGN4O00479 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
HMGN4O00479 CAHM-201ENST00000604200 896 ntBASIC24.52■■□□□ 1.52
HMGN4O00479 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
HMGN4O00479 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
HMGN4O00479 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
HMGN4O00479 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms