Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
DEPDC4Q8N2C3 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
DEPDC4Q8N2C3 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
DEPDC4Q8N2C3 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.02■■□□□ 1.6
DEPDC4Q8N2C3 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
DEPDC4Q8N2C3 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
DEPDC4Q8N2C3 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC25.02■■□□□ 1.6
DEPDC4Q8N2C3 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
DEPDC4Q8N2C3 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.02■■□□□ 1.6
DEPDC4Q8N2C3 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
DEPDC4Q8N2C3 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
DEPDC4Q8N2C3 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
DEPDC4Q8N2C3 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC25■■□□□ 1.59
DEPDC4Q8N2C3 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
DEPDC4Q8N2C3 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC24.98■■□□□ 1.59
DEPDC4Q8N2C3 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC24.98■■□□□ 1.59
DEPDC4Q8N2C3 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
DEPDC4Q8N2C3 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
DEPDC4Q8N2C3 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC24.96■■□□□ 1.59
DEPDC4Q8N2C3 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
DEPDC4Q8N2C3 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC24.96■■□□□ 1.59
DEPDC4Q8N2C3 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
DEPDC4Q8N2C3 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.58
DEPDC4Q8N2C3 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC24.95■■□□□ 1.58
DEPDC4Q8N2C3 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC24.95■■□□□ 1.58
DEPDC4Q8N2C3 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
DEPDC4Q8N2C3 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
DEPDC4Q8N2C3 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC24.93■■□□□ 1.58
DEPDC4Q8N2C3 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
DEPDC4Q8N2C3 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC24.92■■□□□ 1.58
DEPDC4Q8N2C3 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC24.92■■□□□ 1.58
DEPDC4Q8N2C3 SHF-206ENST00000560471 2499 ntTSL 5 BASIC24.89■■□□□ 1.57
DEPDC4Q8N2C3 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
DEPDC4Q8N2C3 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC24.88■■□□□ 1.57
DEPDC4Q8N2C3 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC24.88■■□□□ 1.57
DEPDC4Q8N2C3 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC24.88■■□□□ 1.57
DEPDC4Q8N2C3 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC24.88■■□□□ 1.57
DEPDC4Q8N2C3 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
DEPDC4Q8N2C3 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
DEPDC4Q8N2C3 AL031258.1-201ENST00000623562 325 ntBASIC24.87■■□□□ 1.57
DEPDC4Q8N2C3 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
DEPDC4Q8N2C3 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
DEPDC4Q8N2C3 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
DEPDC4Q8N2C3 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC24.85■■□□□ 1.57
DEPDC4Q8N2C3 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
DEPDC4Q8N2C3 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC24.84■■□□□ 1.57
DEPDC4Q8N2C3 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
DEPDC4Q8N2C3 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
DEPDC4Q8N2C3 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
DEPDC4Q8N2C3 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC24.81■■□□□ 1.56
DEPDC4Q8N2C3 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC24.8■■□□□ 1.56
DEPDC4Q8N2C3 AL161658.1-201ENST00000623641 1967 ntBASIC24.8■■□□□ 1.56
DEPDC4Q8N2C3 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC24.79■■□□□ 1.56
DEPDC4Q8N2C3 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC24.78■■□□□ 1.56
DEPDC4Q8N2C3 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC24.78■■□□□ 1.56
DEPDC4Q8N2C3 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
DEPDC4Q8N2C3 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC24.78■■□□□ 1.56
DEPDC4Q8N2C3 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
DEPDC4Q8N2C3 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
DEPDC4Q8N2C3 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
DEPDC4Q8N2C3 AC139426.1-201ENST00000568218 2529 ntBASIC24.75■■□□□ 1.55
DEPDC4Q8N2C3 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC24.74■■□□□ 1.55
DEPDC4Q8N2C3 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC24.74■■□□□ 1.55
DEPDC4Q8N2C3 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
DEPDC4Q8N2C3 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC24.73■■□□□ 1.55
DEPDC4Q8N2C3 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
DEPDC4Q8N2C3 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC24.71■■□□□ 1.55
DEPDC4Q8N2C3 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC24.71■■□□□ 1.55
DEPDC4Q8N2C3 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
DEPDC4Q8N2C3 EBPL-203ENST00000378270 579 ntTSL 2 BASIC24.7■■□□□ 1.54
DEPDC4Q8N2C3 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
DEPDC4Q8N2C3 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
DEPDC4Q8N2C3 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC24.68■■□□□ 1.54
DEPDC4Q8N2C3 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
DEPDC4Q8N2C3 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
DEPDC4Q8N2C3 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
DEPDC4Q8N2C3 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
DEPDC4Q8N2C3 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC24.66■■□□□ 1.54
DEPDC4Q8N2C3 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
DEPDC4Q8N2C3 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
DEPDC4Q8N2C3 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
DEPDC4Q8N2C3 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC24.65■■□□□ 1.54
DEPDC4Q8N2C3 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC24.65■■□□□ 1.54
DEPDC4Q8N2C3 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
DEPDC4Q8N2C3 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
DEPDC4Q8N2C3 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
DEPDC4Q8N2C3 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
DEPDC4Q8N2C3 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
DEPDC4Q8N2C3 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
DEPDC4Q8N2C3 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC24.6■■□□□ 1.53
DEPDC4Q8N2C3 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
DEPDC4Q8N2C3 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC24.6■■□□□ 1.53
DEPDC4Q8N2C3 MVK-208ENST00000539696 608 ntTSL 5 BASIC24.59■■□□□ 1.53
DEPDC4Q8N2C3 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC24.58■■□□□ 1.53
DEPDC4Q8N2C3 ST7-AS1-201ENST00000456775 1889 ntBASIC24.58■■□□□ 1.52
DEPDC4Q8N2C3 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
DEPDC4Q8N2C3 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
DEPDC4Q8N2C3 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC24.57■■□□□ 1.52
DEPDC4Q8N2C3 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC24.57■■□□□ 1.52
DEPDC4Q8N2C3 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC24.57■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms