RNA–Protein interactions for RNA: ENST00000422441.5

ITGA9-203, Transcript of integrin subunit alpha 9, humanhuman

TSL 1 (best) BASIC

Gene ITGA9, Length 2,282 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA9-203ENST00000422441 NISCHQ9Y2I1 1504 aa54.57■■■■■ 6.33
ITGA9-203ENST00000422441 CCDC180Q9P1Z9 1646 aa46.65■■■■■ 5.06
ITGA9-203ENST00000422441 ZCCHC6Q5VYS8 1495 aaKnown RBP46.11■■■■■ 4.97
ITGA9-203ENST00000422441 SHROOM4Q9ULL8 1493 aa45.99■■■■■ 4.95
ITGA9-203ENST00000422441 DCAF8L2P0C7V8 631 aa45■■■■■ 4.79
ITGA9-203ENST00000422441 SUPT5HO00267 1087 aaKnown RBP44.99■■■■■ 4.79
ITGA9-203ENST00000422441 DCAF1Q9Y4B6 1507 aa44.92■■■■■ 4.78
ITGA9-203ENST00000422441 MYO15BQ96JP2 1530 aa43.76■■■■■ 4.6
ITGA9-203ENST00000422441 CHIC1Q5VXU3 224 aa43.74■■■■■ 4.59
ITGA9-203ENST00000422441 SCRIBQ14160 1630 aa43.45■■■■■ 4.55
ITGA9-203ENST00000422441 ABCC9O60706 1549 aa43.44■■■■■ 4.54
ITGA9-203ENST00000422441 NACADO15069 1562 aa43.16■■■■■ 4.5
ITGA9-203ENST00000422441 RSF1Q96T23 1441 aaPredicted RBP43.02■■■■■ 4.48
ITGA9-203ENST00000422441 RB1CC1Q8TDY2 1594 aa42.55■■■■■ 4.4
ITGA9-203ENST00000422441 CECR2Q9BXF3 1484 aa42.49■■■■■ 4.39
ITGA9-203ENST00000422441 MROH2BQ7Z745 1585 aa42.35■■■■■ 4.37
ITGA9-203ENST00000422441 LOC105371045A0A1W2PR82 267 aa42.32■■■■■ 4.37
ITGA9-203ENST00000422441 WIZO95785 1651 aa42.1■■■■■ 4.33
ITGA9-203ENST00000422441 TRIM41Q8WV44 630 aa42.03■■■■■ 4.32
ITGA9-203ENST00000422441 BAZ1AQ9NRL2 1556 aaPredicted RBP41.94■■■■■ 4.31
ITGA9-203ENST00000422441 PCGF6Q9BYE7 350 aa41.94■■■■■ 4.3
ITGA9-203ENST00000422441 HRCP23327 699 aa41.84■■■■■ 4.29
ITGA9-203ENST00000422441 UNC13AQ9UPW8 1703 aa41.83■■■■■ 4.29
ITGA9-203ENST00000422441 SMARCA4P51532 1647 aa41.62■■■■■ 4.25
ITGA9-203ENST00000422441 FAM9AQ8IZU1 332 aaPredicted RBP41.53■■■■■ 4.24
ITGA9-203ENST00000422441 TOP2AP11388 1531 aaKnown RBP41.51■■■■■ 4.24
ITGA9-203ENST00000422441 EIF4G1Q04637 1599 aaKnown RBP41.5■■■■■ 4.23
ITGA9-203ENST00000422441 TRIM26Q12899 539 aaPredicted RBP41.35■■■■■ 4.21
ITGA9-203ENST00000422441 BICRAQ9NZM4 1560 aa41.33■■■■■ 4.21
ITGA9-203ENST00000422441 CCDC88BA6NC98 1476 aa41.27■■■■■ 4.2
ITGA9-203ENST00000422441 SMARCA2P51531 1590 aa41.25■■■■■ 4.19
ITGA9-203ENST00000422441 PABPN1Q86U42 306 aaKnown RBP eCLIP41.2■■■■■ 4.19
ITGA9-203ENST00000422441 EHMT2Q96KQ7 1210 aa41.05■■■■■ 4.16
ITGA9-203ENST00000422441 ABCC8Q09428 1581 aa40.99■■■■■ 4.15
ITGA9-203ENST00000422441 PEG3Q9GZU2 1588 aa40.93■■■■■ 4.14
ITGA9-203ENST00000422441 PPARGC1BQ86YN6 1023 aaKnown RBP40.87■■■■■ 4.13
ITGA9-203ENST00000422441 ATAD2BQ9ULI0 1458 aa40.61■■■■■ 4.09
ITGA9-203ENST00000422441 SOGA1O94964 1423 aa40.55■■■■■ 4.08
ITGA9-203ENST00000422441 EEA1Q15075 1411 aa40.45■■■■■ 4.07
ITGA9-203ENST00000422441 BAZ1BQ9UIG0 1483 aaKnown RBP40.45■■■■■ 4.07
ITGA9-203ENST00000422441 WRNQ14191 1432 aaPredicted RBP eCLIP40.4■■■■■ 4.06
ITGA9-203ENST00000422441 RUSC2Q8N2Y8 1516 aa40.36■■■■■ 4.05
ITGA9-203ENST00000422441 ZEB1P37275 1124 aaPredicted RBP40.36■■■■■ 4.05
ITGA9-203ENST00000422441 CSRNP3Q8WYN3 585 aa40.33■■■■■ 4.05
ITGA9-203ENST00000422441 TNIKQ9UKE5 1360 aa40.28■■■■■ 4.04
ITGA9-203ENST00000422441 CEP162Q5TB80 1403 aa40.25■■■■■ 4.03
ITGA9-203ENST00000422441 SYNJ1O43426 1573 aa40.22■■■■■ 4.03
ITGA9-203ENST00000422441 GOLGA3Q08378 1498 aa40.09■■■■■ 4.01
ITGA9-203ENST00000422441 UBTFP17480 764 aaKnown RBP40.04■■■■■ 4
ITGA9-203ENST00000422441 NCAPD3P42695 1498 aa39.93■■■■□ 3.98
ITGA9-203ENST00000422441 HMGXB3Q12766 1538 aa39.91■■■■□ 3.98
ITGA9-203ENST00000422441 KIF21BO75037 1637 aa39.91■■■■□ 3.98
ITGA9-203ENST00000422441 CEP164Q9UPV0 1460 aa39.9■■■■□ 3.98
ITGA9-203ENST00000422441 TOP2BQ02880 1626 aa39.82■■■■□ 3.97
ITGA9-203ENST00000422441 BIVM-ERCC5R4GMW8 1640 aa39.71■■■■□ 3.95
ITGA9-203ENST00000422441 TTBK1Q5TCY1 1321 aaPredicted RBP39.67■■■■□ 3.94
ITGA9-203ENST00000422441 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP39.65■■■■□ 3.94
ITGA9-203ENST00000422441 RAPGEF2Q9Y4G8 1499 aa39.6■■■■□ 3.93
ITGA9-203ENST00000422441 CLIP1P30622 1438 aa39.57■■■■□ 3.93
ITGA9-203ENST00000422441 CCER1Q8TC90 406 aaPredicted RBP39.55■■■■□ 3.92
ITGA9-203ENST00000422441 CFTRP13569 1480 aa39.5■■■■□ 3.91
ITGA9-203ENST00000422441 CUX1P39880 1505 aa39.46■■■■□ 3.91
ITGA9-203ENST00000422441 VPS8Q8N3P4 1428 aa39.4■■■■□ 3.9
ITGA9-203ENST00000422441 PRXQ9BXM0 1461 aa39.34■■■■□ 3.89
ITGA9-203ENST00000422441 ERICH3Q5RHP9 1530 aa39.33■■■■□ 3.89
ITGA9-203ENST00000422441 PRDM2Q13029 1718 aa39.23■■■■□ 3.87
ITGA9-203ENST00000422441 KIF27Q86VH2 1401 aa39.2■■■■□ 3.87
ITGA9-203ENST00000422441 RANGAP1P46060 587 aaPredicted RBP39.16■■■■□ 3.86
ITGA9-203ENST00000422441 APLP2Q06481 763 aa39.1■■■■□ 3.85
ITGA9-203ENST00000422441 CADPSQ9ULU8 1353 aa39.09■■■■□ 3.85
ITGA9-203ENST00000422441 ARAP1Q96P48 1450 aa39.01■■■■□ 3.84
ITGA9-203ENST00000422441 CC2D2AQ9P2K1 1620 aa39■■■■□ 3.83
ITGA9-203ENST00000422441 HNRNPUL2Q1KMD3 747 aaKnown RBP38.93■■■■□ 3.82
ITGA9-203ENST00000422441 CUX2O14529 1486 aa38.85■■■■□ 3.81
ITGA9-203ENST00000422441 IGF1RP08069 1367 aa38.8■■■■□ 3.8
ITGA9-203ENST00000422441 FGD5Q6ZNL6 1462 aa38.78■■■■□ 3.8
ITGA9-203ENST00000422441 ARHGAP35Q9NRY4 1499 aa38.73■■■■□ 3.79
ITGA9-203ENST00000422441 FANCD2Q9BXW9 1451 aa38.68■■■■□ 3.78
ITGA9-203ENST00000422441 KANK4Q5T7N3 995 aaPredicted RBP38.67■■■■□ 3.78
ITGA9-203ENST00000422441 DIEXFQ68CQ4 756 aaKnown RBP38.61■■■■□ 3.77
ITGA9-203ENST00000422441 CARMIL1Q5VZK9 1371 aa38.61■■■■□ 3.77
ITGA9-203ENST00000422441 DNMBPQ6XZF7 1577 aa38.5■■■■□ 3.75
ITGA9-203ENST00000422441 ZNF316A6NFI3 1004 aaPredicted RBP38.48■■■■□ 3.75
ITGA9-203ENST00000422441 RRBP1Q9P2E9 1410 aaKnown RBP38.47■■■■□ 3.75
ITGA9-203ENST00000422441 NESP48681 1621 aa38.44■■■■□ 3.74
ITGA9-203ENST00000422441 TOPBP1Q92547 1522 aa38.42■■■■□ 3.74
ITGA9-203ENST00000422441 RAD54L2Q9Y4B4 1467 aa38.39■■■■□ 3.74
ITGA9-203ENST00000422441 ABCA10Q8WWZ4 1543 aa38.38■■■■□ 3.74
ITGA9-203ENST00000422441 POLA1P09884 1462 aaPredicted RBP38.37■■■■□ 3.73
ITGA9-203ENST00000422441 MAP3K1Q13233 1512 aa38.31■■■■□ 3.72
ITGA9-203ENST00000422441 CCNB3Q8WWL7 1395 aa38.27■■■■□ 3.72
ITGA9-203ENST00000422441 TIAM1Q13009 1591 aa38.27■■■■□ 3.72
ITGA9-203ENST00000422441 DHX57Q6P158 1386 aaKnown RBP38.26■■■■□ 3.72
ITGA9-203ENST00000422441 SCAF1Q9H7N4 1312 aaKnown RBP38.26■■■■□ 3.72
ITGA9-203ENST00000422441 CLSPNQ9HAW4 1339 aa38.26■■■■□ 3.72
ITGA9-203ENST00000422441 LAMC3Q9Y6N6 1575 aa38.25■■■■□ 3.71
ITGA9-203ENST00000422441 FHAD1B1AJZ9 1412 aa38.16■■■■□ 3.7
ITGA9-203ENST00000422441 CUL7Q14999 1698 aa38.15■■■■□ 3.7
ITGA9-203ENST00000422441 URB2Q14146 1524 aaKnown RBP38.15■■■■□ 3.7
ITGA9-203ENST00000422441 LRRC9Q6ZRR7 1453 aa38.12■■■■□ 3.69
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms