Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC30.85■■■□□ 2.53
DEPDC4Q8N2C3 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC30.53■■■□□ 2.48
DEPDC4Q8N2C3 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC30.52■■■□□ 2.48
DEPDC4Q8N2C3 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
DEPDC4Q8N2C3 HES6-203ENST00000409160 1600 ntTSL 2 BASIC29.93■■■□□ 2.38
DEPDC4Q8N2C3 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
DEPDC4Q8N2C3 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC29.67■■■□□ 2.34
DEPDC4Q8N2C3 AL356512.1-201ENST00000607453 1739 ntBASIC29.57■■■□□ 2.32
DEPDC4Q8N2C3 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC29.56■■■□□ 2.32
DEPDC4Q8N2C3 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
DEPDC4Q8N2C3 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC29.42■■■□□ 2.3
DEPDC4Q8N2C3 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC29.28■■■□□ 2.28
DEPDC4Q8N2C3 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC29.25■■■□□ 2.27
DEPDC4Q8N2C3 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC29.21■■■□□ 2.27
DEPDC4Q8N2C3 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC29.13■■■□□ 2.25
DEPDC4Q8N2C3 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC29.04■■■□□ 2.24
DEPDC4Q8N2C3 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC28.91■■■□□ 2.22
DEPDC4Q8N2C3 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
DEPDC4Q8N2C3 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC28.87■■■□□ 2.21
DEPDC4Q8N2C3 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC28.82■■■□□ 2.2
DEPDC4Q8N2C3 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
DEPDC4Q8N2C3 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC28.73■■■□□ 2.19
DEPDC4Q8N2C3 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
DEPDC4Q8N2C3 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC28.65■■■□□ 2.18
DEPDC4Q8N2C3 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC28.48■■■□□ 2.15
DEPDC4Q8N2C3 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
DEPDC4Q8N2C3 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC28.4■■■□□ 2.14
DEPDC4Q8N2C3 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
DEPDC4Q8N2C3 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC28.16■■■□□ 2.1
DEPDC4Q8N2C3 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC28.14■■■□□ 2.09
DEPDC4Q8N2C3 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC28.08■■■□□ 2.08
DEPDC4Q8N2C3 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC28.02■■■□□ 2.08
DEPDC4Q8N2C3 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC27.86■■■□□ 2.05
DEPDC4Q8N2C3 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
DEPDC4Q8N2C3 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC27.82■■■□□ 2.04
DEPDC4Q8N2C3 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
DEPDC4Q8N2C3 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC27.79■■■□□ 2.04
DEPDC4Q8N2C3 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
DEPDC4Q8N2C3 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC27.73■■■□□ 2.03
DEPDC4Q8N2C3 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
DEPDC4Q8N2C3 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
DEPDC4Q8N2C3 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC27.67■■■□□ 2.02
DEPDC4Q8N2C3 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC27.65■■■□□ 2.02
DEPDC4Q8N2C3 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC27.63■■■□□ 2.01
DEPDC4Q8N2C3 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
DEPDC4Q8N2C3 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC27.57■■■□□ 2
DEPDC4Q8N2C3 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC27.56■■■□□ 2
DEPDC4Q8N2C3 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC27.56■■■□□ 2
DEPDC4Q8N2C3 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC27.53■■■□□ 2
DEPDC4Q8N2C3 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC27.52■■■□□ 2
DEPDC4Q8N2C3 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC27.51■■□□□ 1.99
DEPDC4Q8N2C3 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC27.42■■□□□ 1.98
DEPDC4Q8N2C3 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
DEPDC4Q8N2C3 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC27.33■■□□□ 1.96
DEPDC4Q8N2C3 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
DEPDC4Q8N2C3 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC27.27■■□□□ 1.96
DEPDC4Q8N2C3 ILK-212ENST00000532063 1617 ntTSL 2 BASIC27.23■■□□□ 1.95
DEPDC4Q8N2C3 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
DEPDC4Q8N2C3 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
DEPDC4Q8N2C3 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC27.17■■□□□ 1.94
DEPDC4Q8N2C3 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC27.15■■□□□ 1.94
DEPDC4Q8N2C3 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
DEPDC4Q8N2C3 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
DEPDC4Q8N2C3 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
DEPDC4Q8N2C3 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
DEPDC4Q8N2C3 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
DEPDC4Q8N2C3 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
DEPDC4Q8N2C3 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
DEPDC4Q8N2C3 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC26.96■■□□□ 1.91
DEPDC4Q8N2C3 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC26.95■■□□□ 1.9
DEPDC4Q8N2C3 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
DEPDC4Q8N2C3 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC26.95■■□□□ 1.9
DEPDC4Q8N2C3 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC26.93■■□□□ 1.9
DEPDC4Q8N2C3 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
DEPDC4Q8N2C3 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC26.91■■□□□ 1.9
DEPDC4Q8N2C3 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC26.9■■□□□ 1.9
DEPDC4Q8N2C3 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC26.88■■□□□ 1.89
DEPDC4Q8N2C3 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
DEPDC4Q8N2C3 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC26.88■■□□□ 1.89
DEPDC4Q8N2C3 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
DEPDC4Q8N2C3 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
DEPDC4Q8N2C3 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC26.82■■□□□ 1.88
DEPDC4Q8N2C3 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC26.82■■□□□ 1.88
DEPDC4Q8N2C3 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
DEPDC4Q8N2C3 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
DEPDC4Q8N2C3 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
DEPDC4Q8N2C3 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC26.69■■□□□ 1.86
DEPDC4Q8N2C3 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
DEPDC4Q8N2C3 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC26.65■■□□□ 1.86
DEPDC4Q8N2C3 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
DEPDC4Q8N2C3 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
DEPDC4Q8N2C3 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC26.62■■□□□ 1.85
DEPDC4Q8N2C3 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC26.59■■□□□ 1.85
DEPDC4Q8N2C3 INO80B-203ENST00000409917 796 ntTSL 2 BASIC26.58■■□□□ 1.85
DEPDC4Q8N2C3 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
DEPDC4Q8N2C3 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC26.56■■□□□ 1.84
DEPDC4Q8N2C3 ST7-205ENST00000393446 2114 ntTSL 5 BASIC26.56■■□□□ 1.84
DEPDC4Q8N2C3 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC26.55■■□□□ 1.84
DEPDC4Q8N2C3 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC26.55■■□□□ 1.84
DEPDC4Q8N2C3 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC26.53■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms