Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
TMEM56-RWDD3S4R434 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
TMEM56-RWDD3S4R434 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC22.85■■□□□ 1.25
TMEM56-RWDD3S4R434 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
TMEM56-RWDD3S4R434 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
TMEM56-RWDD3S4R434 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
TMEM56-RWDD3S4R434 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC22.82■■□□□ 1.24
TMEM56-RWDD3S4R434 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
TMEM56-RWDD3S4R434 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC22.81■■□□□ 1.24
TMEM56-RWDD3S4R434 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC22.8■■□□□ 1.24
TMEM56-RWDD3S4R434 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
TMEM56-RWDD3S4R434 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
TMEM56-RWDD3S4R434 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
TMEM56-RWDD3S4R434 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC22.78■■□□□ 1.24
TMEM56-RWDD3S4R434 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
TMEM56-RWDD3S4R434 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
TMEM56-RWDD3S4R434 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
TMEM56-RWDD3S4R434 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC22.74■■□□□ 1.23
TMEM56-RWDD3S4R434 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC22.74■■□□□ 1.23
TMEM56-RWDD3S4R434 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC22.74■■□□□ 1.23
TMEM56-RWDD3S4R434 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
TMEM56-RWDD3S4R434 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
TMEM56-RWDD3S4R434 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
TMEM56-RWDD3S4R434 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
TMEM56-RWDD3S4R434 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
TMEM56-RWDD3S4R434 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
TMEM56-RWDD3S4R434 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
TMEM56-RWDD3S4R434 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
TMEM56-RWDD3S4R434 AC120057.4-201ENST00000624722 1615 ntBASIC22.66■■□□□ 1.22
TMEM56-RWDD3S4R434 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
TMEM56-RWDD3S4R434 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
TMEM56-RWDD3S4R434 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
TMEM56-RWDD3S4R434 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC22.65■■□□□ 1.22
TMEM56-RWDD3S4R434 ABCB10P1-201ENST00000614297 2181 ntBASIC22.65■■□□□ 1.22
TMEM56-RWDD3S4R434 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC22.65■■□□□ 1.22
TMEM56-RWDD3S4R434 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
TMEM56-RWDD3S4R434 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
TMEM56-RWDD3S4R434 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
TMEM56-RWDD3S4R434 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC22.63■■□□□ 1.21
TMEM56-RWDD3S4R434 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
TMEM56-RWDD3S4R434 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
TMEM56-RWDD3S4R434 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC22.62■■□□□ 1.21
TMEM56-RWDD3S4R434 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC22.61■■□□□ 1.21
TMEM56-RWDD3S4R434 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TMEM56-RWDD3S4R434 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
TMEM56-RWDD3S4R434 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC22.59■■□□□ 1.21
TMEM56-RWDD3S4R434 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
TMEM56-RWDD3S4R434 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
TMEM56-RWDD3S4R434 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC22.57■■□□□ 1.2
TMEM56-RWDD3S4R434 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
TMEM56-RWDD3S4R434 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC22.56■■□□□ 1.2
TMEM56-RWDD3S4R434 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
TMEM56-RWDD3S4R434 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TMEM56-RWDD3S4R434 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TMEM56-RWDD3S4R434 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TMEM56-RWDD3S4R434 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
TMEM56-RWDD3S4R434 ABCB10P3-201ENST00000561950 2166 ntBASIC22.53■■□□□ 1.2
TMEM56-RWDD3S4R434 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC22.53■■□□□ 1.2
TMEM56-RWDD3S4R434 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC22.51■■□□□ 1.19
TMEM56-RWDD3S4R434 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
TMEM56-RWDD3S4R434 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
TMEM56-RWDD3S4R434 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
TMEM56-RWDD3S4R434 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC22.48■■□□□ 1.19
TMEM56-RWDD3S4R434 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC22.47■■□□□ 1.19
TMEM56-RWDD3S4R434 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
TMEM56-RWDD3S4R434 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC22.47■■□□□ 1.19
TMEM56-RWDD3S4R434 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
TMEM56-RWDD3S4R434 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
TMEM56-RWDD3S4R434 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
TMEM56-RWDD3S4R434 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
TMEM56-RWDD3S4R434 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
TMEM56-RWDD3S4R434 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC22.43■■□□□ 1.18
TMEM56-RWDD3S4R434 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
TMEM56-RWDD3S4R434 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC22.42■■□□□ 1.18
TMEM56-RWDD3S4R434 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
TMEM56-RWDD3S4R434 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
TMEM56-RWDD3S4R434 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
TMEM56-RWDD3S4R434 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC22.41■■□□□ 1.18
TMEM56-RWDD3S4R434 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
TMEM56-RWDD3S4R434 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
TMEM56-RWDD3S4R434 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
TMEM56-RWDD3S4R434 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC22.4■■□□□ 1.18
TMEM56-RWDD3S4R434 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC22.4■■□□□ 1.18
TMEM56-RWDD3S4R434 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
TMEM56-RWDD3S4R434 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
TMEM56-RWDD3S4R434 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC22.39■■□□□ 1.17
TMEM56-RWDD3S4R434 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC22.38■■□□□ 1.17
TMEM56-RWDD3S4R434 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TMEM56-RWDD3S4R434 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
TMEM56-RWDD3S4R434 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TMEM56-RWDD3S4R434 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
TMEM56-RWDD3S4R434 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
TMEM56-RWDD3S4R434 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
TMEM56-RWDD3S4R434 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
TMEM56-RWDD3S4R434 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
TMEM56-RWDD3S4R434 SHF-206ENST00000560471 2499 ntTSL 5 BASIC22.32■■□□□ 1.16
TMEM56-RWDD3S4R434 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
TMEM56-RWDD3S4R434 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
TMEM56-RWDD3S4R434 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
TMEM56-RWDD3S4R434 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms