Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC27.43■■□□□ 1.98
TMEM56-RWDD3S4R434 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
TMEM56-RWDD3S4R434 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC27.36■■□□□ 1.97
TMEM56-RWDD3S4R434 HES6-203ENST00000409160 1600 ntTSL 2 BASIC26.97■■□□□ 1.91
TMEM56-RWDD3S4R434 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC26.81■■□□□ 1.88
TMEM56-RWDD3S4R434 AL356512.1-201ENST00000607453 1739 ntBASIC26.72■■□□□ 1.87
TMEM56-RWDD3S4R434 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC26.67■■□□□ 1.86
TMEM56-RWDD3S4R434 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
TMEM56-RWDD3S4R434 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.82
TMEM56-RWDD3S4R434 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
TMEM56-RWDD3S4R434 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
TMEM56-RWDD3S4R434 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC26.33■■□□□ 1.81
TMEM56-RWDD3S4R434 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC26.32■■□□□ 1.8
TMEM56-RWDD3S4R434 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
TMEM56-RWDD3S4R434 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC26.12■■□□□ 1.77
TMEM56-RWDD3S4R434 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC26.03■■□□□ 1.76
TMEM56-RWDD3S4R434 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
TMEM56-RWDD3S4R434 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC25.93■■□□□ 1.74
TMEM56-RWDD3S4R434 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
TMEM56-RWDD3S4R434 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC25.88■■□□□ 1.73
TMEM56-RWDD3S4R434 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC25.87■■□□□ 1.73
TMEM56-RWDD3S4R434 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC25.78■■□□□ 1.72
TMEM56-RWDD3S4R434 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
TMEM56-RWDD3S4R434 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC25.7■■□□□ 1.7
TMEM56-RWDD3S4R434 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
TMEM56-RWDD3S4R434 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
TMEM56-RWDD3S4R434 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC25.37■■□□□ 1.65
TMEM56-RWDD3S4R434 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC25.37■■□□□ 1.65
TMEM56-RWDD3S4R434 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC25.21■■□□□ 1.63
TMEM56-RWDD3S4R434 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
TMEM56-RWDD3S4R434 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC25.17■■□□□ 1.62
TMEM56-RWDD3S4R434 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC25.06■■□□□ 1.6
TMEM56-RWDD3S4R434 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
TMEM56-RWDD3S4R434 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC25■■□□□ 1.59
TMEM56-RWDD3S4R434 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC24.94■■□□□ 1.58
TMEM56-RWDD3S4R434 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
TMEM56-RWDD3S4R434 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
TMEM56-RWDD3S4R434 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
TMEM56-RWDD3S4R434 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
TMEM56-RWDD3S4R434 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC24.79■■□□□ 1.56
TMEM56-RWDD3S4R434 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
TMEM56-RWDD3S4R434 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
TMEM56-RWDD3S4R434 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
TMEM56-RWDD3S4R434 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC24.68■■□□□ 1.54
TMEM56-RWDD3S4R434 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC24.65■■□□□ 1.54
TMEM56-RWDD3S4R434 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
TMEM56-RWDD3S4R434 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC24.59■■□□□ 1.53
TMEM56-RWDD3S4R434 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
TMEM56-RWDD3S4R434 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
TMEM56-RWDD3S4R434 ILK-212ENST00000532063 1617 ntTSL 2 BASIC24.51■■□□□ 1.51
TMEM56-RWDD3S4R434 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
TMEM56-RWDD3S4R434 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TMEM56-RWDD3S4R434 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.5
TMEM56-RWDD3S4R434 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC24.43■■□□□ 1.5
TMEM56-RWDD3S4R434 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
TMEM56-RWDD3S4R434 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC24.33■■□□□ 1.49
TMEM56-RWDD3S4R434 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC24.32■■□□□ 1.48
TMEM56-RWDD3S4R434 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
TMEM56-RWDD3S4R434 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
TMEM56-RWDD3S4R434 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC24.28■■□□□ 1.48
TMEM56-RWDD3S4R434 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
TMEM56-RWDD3S4R434 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
TMEM56-RWDD3S4R434 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
TMEM56-RWDD3S4R434 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
TMEM56-RWDD3S4R434 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
TMEM56-RWDD3S4R434 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
TMEM56-RWDD3S4R434 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC24.12■■□□□ 1.45
TMEM56-RWDD3S4R434 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
TMEM56-RWDD3S4R434 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC24.11■■□□□ 1.45
TMEM56-RWDD3S4R434 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC24.11■■□□□ 1.45
TMEM56-RWDD3S4R434 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC24.11■■□□□ 1.45
TMEM56-RWDD3S4R434 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC24.11■■□□□ 1.45
TMEM56-RWDD3S4R434 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC24.1■■□□□ 1.45
TMEM56-RWDD3S4R434 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC24.04■■□□□ 1.44
TMEM56-RWDD3S4R434 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
TMEM56-RWDD3S4R434 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC24.01■■□□□ 1.43
TMEM56-RWDD3S4R434 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC23.99■■□□□ 1.43
TMEM56-RWDD3S4R434 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
TMEM56-RWDD3S4R434 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
TMEM56-RWDD3S4R434 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
TMEM56-RWDD3S4R434 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC23.95■■□□□ 1.42
TMEM56-RWDD3S4R434 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
TMEM56-RWDD3S4R434 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
TMEM56-RWDD3S4R434 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC23.89■■□□□ 1.42
TMEM56-RWDD3S4R434 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
TMEM56-RWDD3S4R434 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
TMEM56-RWDD3S4R434 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
TMEM56-RWDD3S4R434 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
TMEM56-RWDD3S4R434 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
TMEM56-RWDD3S4R434 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
TMEM56-RWDD3S4R434 ST7-205ENST00000393446 2114 ntTSL 5 BASIC23.8■■□□□ 1.4
TMEM56-RWDD3S4R434 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC23.8■■□□□ 1.4
TMEM56-RWDD3S4R434 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
TMEM56-RWDD3S4R434 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
TMEM56-RWDD3S4R434 AC145285.7-201ENST00000614819 1539 ntBASIC23.78■■□□□ 1.4
TMEM56-RWDD3S4R434 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
TMEM56-RWDD3S4R434 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC23.77■■□□□ 1.4
TMEM56-RWDD3S4R434 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
TMEM56-RWDD3S4R434 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
TMEM56-RWDD3S4R434 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms